2J4OA

Structure of tab1
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
355
structure length
355
Chain Sequence
SWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING
publication title Tak1-Binding Protein 1 is a Pseudophosphatase.
pubmed doi rcsb
source organism Homo sapiens
total genus 114
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 2j4oA00
3W43A 2Y09A 2J4OA 2JFRA 3W41A 4LGAB 2PK0A 3F79A 4RA2A 4LA7B 2J82A 2PNQA 3NMNB 5JO2B 3JRQA 3ZT9A 3W40A 3NMTB 2CM1A 2POPA 4N0GA 3T9QA 3KDJB 3ES2A 5F1MA 4JNDA 2I0OA 3UJLB 3ZVUB 3W44A 5ITIA 4LGBB 3MQ3A 4LG5B 3EQ2A 4YZHA 3D8KA 3FXKA 4YZGA 2JFTA 3FXLA 2I44A 3NMVB 1A6QA 3W42A 1TXOA 2XZVA 3FXOA 3UJGB 2JFSA 2P8EA 2J86A 4DA1A 4RAGA 5D2UA 2IRMA 3RNRA 3PU9A 3FXJA 3N3CA 4WVOB 2ISNA 2IQ1A 3KB3B 2V06A 4OICB 3T91A 4DS8B 3QN1B 3RT0A 3KE6A 4RAFA 5JO1B 2POMA 3FXMA 3UJKA 3W45A
chains in the Genus database with same CATH superfamily
3W43A 2Y09A 2J4OA 2JFRA 3W41A 4LGAB 2PK0A 3F79A 4RA2A 4LA7B 2J82A 2PNQA 3NMNB 5JO2B 3JRQA 3ZT9A 3W40A 3NMTB 2CM1A 2POPA 4N0GA 3T9QA 3KDJB 4IIKA 3ES2A 5F1MA 4JNDA 2I0OA 3UJLB 3ZVUB 3W44A 5ITIA 4LGBB 3MQ3A 4LG5B 3EQ2A 4YZHA 3D8KA 3FXKA 4YZGA 2JFTA 3FXLA 2I44A 3NMVB 1A6QA 3W42A 1TXOA 2XZVA 3FXOA 3UJGB 2JFSA 2P8EA 2J86A 4IIPA 4RAGA 4DA1A 5D2UA 2IRMA 3RNRA 3PU9A 3FXJA 3N3CA 4WVOB 2ISNA 2IQ1A 3KB3B 2V06A 4OICB 3T91A 4DS8B 3QN1B 3RT0A 3KE6A 4RAFA 5JO1B 2POMA 3FXMA 3UJKA 3W45A
chains in the Genus database with same CATH topology
3W43A 2Y09A 2J4OA 2JFRA 3W41A 4LGAB 2PK0A 3F79A 4RA2A 4LA7B 2J82A 2PNQA 3NMNB 5JO2B 3JRQA 3ZT9A 3W40A 3NMTB 2CM1A 2POPA 4N0GA 3T9QA 3KDJB 3ES2A 5F1MA 4JNDA 2I0OA 3UJLB 3ZVUB 3W44A 5ITIA 4LGBB 3MQ3A 4LG5B 3EQ2A 4YZHA 3D8KA 3FXKA 4YZGA 2JFTA 3FXLA 2I44A 3NMVB 1A6QA 3W42A 1TXOA 2XZVA 3FXOA 3UJGB 2JFSA 2P8EA 2J86A 4DA1A 4RAGA 5D2UA 2IRMA 3RNRA 3PU9A 3FXJA 3N3CA 4WVOB 2ISNA 2IQ1A 3KB3B 2V06A 4OICB 3T91A 4DS8B 3QN1B 3RT0A 3KE6A 4RAFA 5JO1B 2POMA 3FXMA 3UJKA 3W45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W43 A;  2Y09 A;  2J4O A;  2JFR A;  3W41 A;  4LGA B;  2PK0 A;  3F79 A;  4RA2 A;  4LA7 B;  2J82 A;  2PNQ A;  3NMN B;  5JO2 B;  3JRQ A;  3ZT9 A;  3W40 A;  3NMT B;  2CM1 A;  2POP A;  4N0G A;  3T9Q A;  3KDJ B;  3ES2 A;  5F1M A;  4JND A;  2I0O A;  3UJL B;  3ZVU B;  3W44 A;  5ITI A;  4LGB B;  3MQ3 A;  4LG5 B;  3EQ2 A;  4YZH A;  3D8K A;  3FXK A;  4YZG A;  2JFT A;  3FXL A;  2I44 A;  3NMV B;  1A6Q A;  3W42 A;  1TXO A;  2XZV A;  3FXO A;  3UJG B;  2JFS A;  2P8E A;  2J86 A;  4DA1 A;  4RAG A;  5D2U A;  2IRM A;  3RNR A;  3PU9 A;  3FXJ A;  3N3C A;  4WVO B;  2ISN A;  2IQ1 A;  3KB3 B;  2V06 A;  4OIC B;  3T91 A;  4DS8 B;  3QN1 B;  3RT0 A;  3KE6 A;  4RAF A;  5JO1 B;  2POM A;  3FXM A;  3UJK A;  3W45 A; 
#chains in the Genus database with same CATH topology
 3W43 A;  2Y09 A;  2J4O A;  2JFR A;  3W41 A;  4LGA B;  2PK0 A;  3F79 A;  4RA2 A;  4LA7 B;  2J82 A;  2PNQ A;  3NMN B;  5JO2 B;  3JRQ A;  3ZT9 A;  3W40 A;  3NMT B;  2CM1 A;  2POP A;  4N0G A;  3T9Q A;  3KDJ B;  4IIK A;  3ES2 A;  5F1M A;  4JND A;  2I0O A;  3UJL B;  3ZVU B;  3W44 A;  5ITI A;  4LGB B;  3MQ3 A;  4LG5 B;  3EQ2 A;  4YZH A;  3D8K A;  3FXK A;  4YZG A;  2JFT A;  3FXL A;  2I44 A;  3NMV B;  1A6Q A;  3W42 A;  1TXO A;  2XZV A;  3FXO A;  3UJG B;  2JFS A;  2P8E A;  2J86 A;  4IIP A;  4RAG A;  4DA1 A;  5D2U A;  2IRM A;  3RNR A;  3PU9 A;  3FXJ A;  3N3C A;  4WVO B;  2ISN A;  2IQ1 A;  3KB3 B;  2V06 A;  4OIC B;  3T91 A;  4DS8 B;  3QN1 B;  3RT0 A;  3KE6 A;  4RAF A;  5JO1 B;  2POM A;  3FXM A;  3UJK A;  3W45 A; 
#chains in the Genus database with same CATH homology
 3W43 A;  2Y09 A;  2J4O A;  2JFR A;  3W41 A;  4LGA B;  2PK0 A;  3F79 A;  4RA2 A;  4LA7 B;  2J82 A;  2PNQ A;  3NMN B;  5JO2 B;  3JRQ A;  3ZT9 A;  3W40 A;  3NMT B;  2CM1 A;  2POP A;  4N0G A;  3T9Q A;  3KDJ B;  3ES2 A;  5F1M A;  4JND A;  2I0O A;  3UJL B;  3ZVU B;  3W44 A;  5ITI A;  4LGB B;  3MQ3 A;  4LG5 B;  3EQ2 A;  4YZH A;  3D8K A;  3FXK A;  4YZG A;  2JFT A;  3FXL A;  2I44 A;  3NMV B;  1A6Q A;  3W42 A;  1TXO A;  2XZV A;  3FXO A;  3UJG B;  2JFS A;  2P8E A;  2J86 A;  4DA1 A;  4RAG A;  5D2U A;  2IRM A;  3RNR A;  3PU9 A;  3FXJ A;  3N3C A;  4WVO B;  2ISN A;  2IQ1 A;  3KB3 B;  2V06 A;  4OIC B;  3T91 A;  4DS8 B;  3QN1 B;  3RT0 A;  3KE6 A;  4RAF A;  5JO1 B;  2POM A;  3FXM A;  3UJK A;  3W45 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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