2J6YA

Structural and functional characterisation of partner switching regulating the environmental stress response in bacillus subtilis
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
85
structure length
85
Chain Sequence
MDFREVIEQRYHQLLSRYIAELTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGMAYQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PHOSPHOSERINE PHOSPHATASE RSBU
publication title Structural and functional characterization of partner switching regulating the environmental stress response in Bacillus subtilis.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 38
structure length 85
sequence length 85
chains with identical sequence B, C, D, E
ec nomenclature ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08673 RsbU_N Phosphoserine phosphatase RsbU, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.30 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 KaiA/RbsU domain 2j6yA00
1R5QA 1Q6AA 1SV1A 1W53A 1R8JA 1Q6BA 1SUYA 2J6ZA 4G86A 2J70A 1V2ZA 5C5EA 2J6YA
chains in the Genus database with same CATH superfamily
3M1MA 1UZ3A 1Q6BA 1SUYA 2J6ZA 3EZXA 3IV9A 1SLYA 4G86A 3BULA 2FMME 1R8JA 3H20A 3WHPA 1QSAA 2PBIA 5C8DA 2I2XB 4M0MA 1R5QA 1QTEA 2J70A 4X8QA 4HEHA 1BMTA 2J6YA 5C5EA 4HH3C 3IVAA 1Q6AA 1SV1A 1W53A 1V2ZA 1K7YA 1K98A 4JGIA 3L9TA 3BJDA 1UTUA
chains in the Genus database with same CATH topology
1R5QA 1Q6AA 1SV1A 1W53A 1R8JA 1Q6BA 1SUYA 2J6ZA 4G86A 2J70A 1V2ZA 5C5EA 2J6YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5Q A;  1Q6A A;  1SV1 A;  1W53 A;  1R8J A;  1Q6B A;  1SUY A;  2J6Z A;  4G86 A;  2J70 A;  1V2Z A;  5C5E A;  2J6Y A; 
#chains in the Genus database with same CATH topology
 3M1M A;  1UZ3 A;  1Q6B A;  1SUY A;  2J6Z A;  3EZX A;  3IV9 A;  1SLY A;  4G86 A;  3BUL A;  2FMM E;  1R8J A;  3H20 A;  3WHP A;  1QSA A;  2PBI A;  5C8D A;  2I2X B;  4M0M A;  1R5Q A;  1QTE A;  2J70 A;  4X8Q A;  4HEH A;  1BMT A;  2J6Y A;  5C5E A;  4HH3 C;  3IVA A;  1Q6A A;  1SV1 A;  1W53 A;  1V2Z A;  1K7Y A;  1K98 A;  4JGI A;  3L9T A;  3BJD A;  1UTU A; 
#chains in the Genus database with same CATH homology
 1R5Q A;  1Q6A A;  1SV1 A;  1W53 A;  1R8J A;  1Q6B A;  1SUY A;  2J6Z A;  4G86 A;  2J70 A;  1V2Z A;  5C5E A;  2J6Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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