2J6ZA

Structural and functional characterisation of partner-switching regulating the environmental stress response in b. subtilis
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
86
structure length
86
Chain Sequence
MDFREVIEQRYHQLLSRYIAELTETSLIQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGMAYQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional characterization of partner switching regulating the environmental stress response in Bacillus subtilis.
pubmed doi rcsb
molecule tags Hydrolase
source organism Bacillus subtilis
molecule keywords PHOSPHOSERINE PHOSPHATASE RSBU
total genus 43
structure length 86
sequence length 86
ec nomenclature ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08673 RsbU_N Phosphoserine phosphatase RsbU, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.30 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 KaiA/RbsU domain 2j6zA00
1SV1A 2J70A 5C5EA 1W53A 2J6YA 1SUYA 4G86A 1Q6AA 1Q6BA 1R8JA 1V2ZA 2J6ZA 1R5QA
chains in the Genus database with same CATH superfamily
2J70A 2PBIA 1QSAA 2J6YA 1Q6AA 1UZ3A 1R8JA 2J6ZA 1V2ZA 1SV1A 3M1MA 4JGIA 3IVAA 4HEHA 4X8QA 5C8DA 1Q6BA 5C5EA 3IV9A 1W53A 4M0MA 4G86A 3BULA 1SLYA 1UTUA 1R5QA 1K7YA 1QTEA 3WHPA 3BJDA 3H20A 2FMME 4HH3C 1SUYA 1K98A 3EZXA 3L9TA 2I2XB 1BMTA
chains in the Genus database with same CATH topology
1SV1A 2J70A 5C5EA 1W53A 2J6YA 1SUYA 4G86A 1Q6AA 1Q6BA 1R8JA 1V2ZA 2J6ZA 1R5QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SV1 A;  2J70 A;  5C5E A;  1W53 A;  2J6Y A;  1SUY A;  4G86 A;  1Q6A A;  1Q6B A;  1R8J A;  1V2Z A;  2J6Z A;  1R5Q A; 
#chains in the Genus database with same CATH topology
 2J70 A;  2PBI A;  1QSA A;  2J6Y A;  1Q6A A;  1UZ3 A;  1R8J A;  2J6Z A;  1V2Z A;  1SV1 A;  3M1M A;  4JGI A;  3IVA A;  4HEH A;  4X8Q A;  5C8D A;  1Q6B A;  5C5E A;  3IV9 A;  1W53 A;  4M0M A;  4G86 A;  3BUL A;  1SLY A;  1UTU A;  1R5Q A;  1K7Y A;  1QTE A;  3WHP A;  3BJD A;  3H20 A;  2FMM E;  4HH3 C;  1SUY A;  1K98 A;  3EZX A;  3L9T A;  2I2X B;  1BMT A; 
#chains in the Genus database with same CATH homology
 1SV1 A;  2J70 A;  5C5E A;  1W53 A;  2J6Y A;  1SUY A;  4G86 A;  1Q6A A;  1Q6B A;  1R8J A;  1V2Z A;  2J6Z A;  1R5Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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