The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
94
|
sequence length |
338
|
structure length |
338
|
Chain Sequence |
VKKNDLFVDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQVEQSNPIGFYHFARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYQDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITVAE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Elucidation of the Molecular Recognition of Bacterial Cell Wall by Modular Pneumococcal Phage Endolysin Cpl-1.
pubmed doi rcsb |
molecule tags |
Hydrolase
|
source organism |
Bacteriophage cp-1
|
molecule keywords |
LYSOZYME
|
total genus |
94
|
structure length |
338
|
sequence length |
338
|
ec nomenclature |
ec
3.2.1.17: Lysozyme. |
pdb deposition date | 2006-10-25 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01183 | Glyco_hydro_25 | Glycosyl hydrolases family 25 |
A | PF01473 | CW_binding_1 | Putative cell wall binding repeat |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Ribbon | left handed beta-beta-3-solenoid | Cholin Binding | ||
Mainly Beta | Single Sheet | Multimodular pneumococcal cell wall endolysin, domain 3 | Multimodular pneumococcal cell wall endolysin, domain 3 | ||
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |