2J91A

Crystal structure of human adenylosuccinate lyase in complex with amp
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
470
structure length
457
Chain Sequence
GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Homo sapiens
publication title Crystal Structure of Human Adenylosuccinate Lyase
rcsb
molecule keywords ADENYLOSUCCINATE LYASE
total genus 182
structure length 457
sequence length 470
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2006-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2j91A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2j91A02
1YFEA 4MX2A 3OCEA 1Q5NA 3NO9A 4CQ5A 2NYNA 4HGVA 2O78A 4V2RA 2O7EA 1J3UA 4NLEA 1FUQA 1DCNA 1YISA 1HY0A 2O6YA 4FLCA 1GKJA 3NZ4A 4EEIA 2O7FA 3QBPA 2PFMA 5F92A 5F91A 1T6PA 1DOFA 1W27A 1XWOA 2J91A 1K7WA 2PTRA 1VDKA 2RJRA 1KQ7A 1TJUA 4BAAA 3RRPA 2O7DA 1EB4A 1T6JA 2RJSA 4BABA 1TJVA 3GZHA 2OHYA 2YIIA 2PTQA 4APAA 1GKMA 4FFXA 3KDYA 5EYVA 3R6YA 3CZOA 1FUPA 3E04A 2QVEA 1U16A 1HY1A 2E9FA 4ADLA 1GK2A 2X75A 1K62A 2NYFA 3TV2A 2O7BA 4C5RA 1FUOA 5HW2A 1YFMA 4NSLA 3R6VA 1AUWA 3KDZA 4APBA 2VD6A 3GTDA 4C6GA 3UNVA 3RD8A 3BHGA 1RE5A 1C3CA 1U15A 1B8FA 1TJWA 4ADMA 4EFCA 3C8TA 3OCFA 2QGAB 4V2QA 2HVGA 4C5SA 1I0AA 1Y2MA 5EYTA 1FURA 1JSWA 2FUSA 3R6QA 4C5UA 5D6BA 1GK3A 2PTSA 1C3UA 1TJ7A
chains in the Genus database with same CATH superfamily
1YFEA 4MX2A 3OCEA 1Q5NA 3NO9A 4CQ5A 2NYNA 4HGVA 2O78A 4V2RA 2O7EA 2FENA 1J3UA 2VL7A 4NLEA 1FUQA 1DCNA 1YISA 1HY0A 2O6YA 4FLCA 1GKJA 3NZ4A 4EEIA 2O7FA 2VSFA 3QBPA 2PFMA 5F92A 5F91A 1T6PA 5M0IA 1DOFA 1W27A 5H8WA 4A15A 1XWOA 2J91A 1K7WA 2PTRA 1VDKA 2RJRA 1KQ7A 1TJUA 3CRW1 1XMDA 4BAAA 3RRPA 2O7DA 1EB4A 1T6JA 2RJSA 4BABA 1TJVA 3GZHA 2OHYA 2YIIA 2PTQA 4APAA 1XMCA 1GKMA 4FFXA 3KDYA 5EYVA 3R6YA 3CZOA 1FUPA 3E04A 2QVEA 1XL7A 1U16A 1HY1A 5M0JA 2E9FA 4ADLA 2FELA 1GK2A 2X75A 1K62A 2NYFA 3TV2A 2O7BA 4C5RA 1FUOA 5HW2A 1YFMA 4NSLA 3R6VA 1AUWA 3KDZA 4APBA 2VD6A 3GTDA 4C6GA 3UNVA 3RD8A 3BHGA 1RE5A 1C3CA 3CRVA 1U15A 1B8FA 1TJWA 4ADMA 4EFCA 3C8TA 3OCFA 4WNLA 2QGAB 4V2QA 2HVGA 4C5SA 1XL8A 1I0AA 1Y2MA 5EYTA 1FURA 1JSWA 2FUSA 3R6QA 4C5UA 5D6BA 1XLYA 1GK3A 2PTSA 1C3UA 1TJ7A
chains in the Genus database with same CATH topology
1YFEA 4MX2A 3OCEA 1Q5NA 3NO9A 4CQ5A 2NYNA 4HGVA 2O78A 4V2RA 2O7EA 1J3UA 4NLEA 1FUQA 1DCNA 1YISA 1HY0A 2O6YA 4FLCA 1GKJA 3NZ4A 4EEIA 2O7FA 3QBPA 2PFMA 5F92A 5F91A 1T6PA 1DOFA 1W27A 1XWOA 2J91A 1K7WA 2PTRA 1VDKA 2RJRA 1KQ7A 1TJUA 4BAAA 3RRPA 2O7DA 1EB4A 1T6JA 2RJSA 4BABA 1TJVA 3GZHA 2OHYA 2YIIA 2PTQA 4APAA 1GKMA 4FFXA 3KDYA 5EYVA 3R6YA 3CZOA 1FUPA 3E04A 2QVEA 1U16A 1HY1A 2E9FA 4ADLA 1GK2A 2X75A 1K62A 2NYFA 3TV2A 2O7BA 4C5RA 1FUOA 5HW2A 1YFMA 4NSLA 3R6VA 1AUWA 3KDZA 4APBA 2VD6A 3GTDA 4C6GA 3UNVA 3RD8A 3BHGA 1RE5A 1C3CA 1U15A 1B8FA 1TJWA 4ADMA 4EFCA 3C8TA 3OCFA 2QGAB 4V2QA 2HVGA 4C5SA 1I0AA 1Y2MA 5EYTA 1FURA 1JSWA 2FUSA 3R6QA 4C5UA 5D6BA 1GK3A 2PTSA 1C3UA 1TJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YFE A;  4MX2 A;  3OCE A;  1Q5N A;  3NO9 A;  4CQ5 A;  2NYN A;  4HGV A;  2O78 A;  4V2R A;  2O7E A;  1J3U A;  4NLE A;  1FUQ A;  1DCN A;  1YIS A;  1HY0 A;  2O6Y A;  4FLC A;  1GKJ A;  3NZ4 A;  4EEI A;  2O7F A;  3QBP A;  2PFM A;  5F92 A;  5F91 A;  1T6P A;  1DOF A;  1W27 A;  1XWO A;  2J91 A;  1K7W A;  2PTR A;  1VDK A;  2RJR A;  1KQ7 A;  1TJU A;  4BAA A;  3RRP A;  2O7D A;  1EB4 A;  1T6J A;  2RJS A;  4BAB A;  1TJV A;  3GZH A;  2OHY A;  2YII A;  2PTQ A;  4APA A;  1GKM A;  4FFX A;  3KDY A;  5EYV A;  3R6Y A;  3CZO A;  1FUP A;  3E04 A;  2QVE A;  1U16 A;  1HY1 A;  2E9F A;  4ADL A;  1GK2 A;  2X75 A;  1K62 A;  2NYF A;  3TV2 A;  2O7B A;  4C5R A;  1FUO A;  5HW2 A;  1YFM A;  4NSL A;  3R6V A;  1AUW A;  3KDZ A;  4APB A;  2VD6 A;  3GTD A;  4C6G A;  3UNV A;  3RD8 A;  3BHG A;  1RE5 A;  1C3C A;  1U15 A;  1B8F A;  1TJW A;  4ADM A;  4EFC A;  3C8T A;  3OCF A;  2QGA B;  4V2Q A;  2HVG A;  4C5S A;  1I0A A;  1Y2M A;  5EYT A;  1FUR A;  1JSW A;  2FUS A;  3R6Q A;  4C5U A;  5D6B A;  1GK3 A;  2PTS A;  1C3U A;  1TJ7 A; 
#chains in the Genus database with same CATH topology
 1YFE A;  4MX2 A;  3OCE A;  1Q5N A;  3NO9 A;  4CQ5 A;  2NYN A;  4HGV A;  2O78 A;  4V2R A;  2O7E A;  2FEN A;  1J3U A;  2VL7 A;  4NLE A;  1FUQ A;  1DCN A;  1YIS A;  1HY0 A;  2O6Y A;  4FLC A;  1GKJ A;  3NZ4 A;  4EEI A;  2O7F A;  2VSF A;  3QBP A;  2PFM A;  5F92 A;  5F91 A;  1T6P A;  5M0I A;  1DOF A;  1W27 A;  5H8W A;  4A15 A;  1XWO A;  2J91 A;  1K7W A;  2PTR A;  1VDK A;  2RJR A;  1KQ7 A;  1TJU A;  3CRW 1;  1XMD A;  4BAA A;  3RRP A;  2O7D A;  1EB4 A;  1T6J A;  2RJS A;  4BAB A;  1TJV A;  3GZH A;  2OHY A;  2YII A;  2PTQ A;  4APA A;  1XMC A;  1GKM A;  4FFX A;  3KDY A;  5EYV A;  3R6Y A;  3CZO A;  1FUP A;  3E04 A;  2QVE A;  1XL7 A;  1U16 A;  1HY1 A;  5M0J A;  2E9F A;  4ADL A;  2FEL A;  1GK2 A;  2X75 A;  1K62 A;  2NYF A;  3TV2 A;  2O7B A;  4C5R A;  1FUO A;  5HW2 A;  1YFM A;  4NSL A;  3R6V A;  1AUW A;  3KDZ A;  4APB A;  2VD6 A;  3GTD A;  4C6G A;  3UNV A;  3RD8 A;  3BHG A;  1RE5 A;  1C3C A;  3CRV A;  1U15 A;  1B8F A;  1TJW A;  4ADM A;  4EFC A;  3C8T A;  3OCF A;  4WNL A;  2QGA B;  4V2Q A;  2HVG A;  4C5S A;  1XL8 A;  1I0A A;  1Y2M A;  5EYT A;  1FUR A;  1JSW A;  2FUS A;  3R6Q A;  4C5U A;  5D6B A;  1XLY A;  1GK3 A;  2PTS A;  1C3U A;  1TJ7 A; 
#chains in the Genus database with same CATH homology
 1YFE A;  4MX2 A;  3OCE A;  1Q5N A;  3NO9 A;  4CQ5 A;  2NYN A;  4HGV A;  2O78 A;  4V2R A;  2O7E A;  1J3U A;  4NLE A;  1FUQ A;  1DCN A;  1YIS A;  1HY0 A;  2O6Y A;  4FLC A;  1GKJ A;  3NZ4 A;  4EEI A;  2O7F A;  3QBP A;  2PFM A;  5F92 A;  5F91 A;  1T6P A;  1DOF A;  1W27 A;  1XWO A;  2J91 A;  1K7W A;  2PTR A;  1VDK A;  2RJR A;  1KQ7 A;  1TJU A;  4BAA A;  3RRP A;  2O7D A;  1EB4 A;  1T6J A;  2RJS A;  4BAB A;  1TJV A;  3GZH A;  2OHY A;  2YII A;  2PTQ A;  4APA A;  1GKM A;  4FFX A;  3KDY A;  5EYV A;  3R6Y A;  3CZO A;  1FUP A;  3E04 A;  2QVE A;  1U16 A;  1HY1 A;  2E9F A;  4ADL A;  1GK2 A;  2X75 A;  1K62 A;  2NYF A;  3TV2 A;  2O7B A;  4C5R A;  1FUO A;  5HW2 A;  1YFM A;  4NSL A;  3R6V A;  1AUW A;  3KDZ A;  4APB A;  2VD6 A;  3GTD A;  4C6G A;  3UNV A;  3RD8 A;  3BHG A;  1RE5 A;  1C3C A;  1U15 A;  1B8F A;  1TJW A;  4ADM A;  4EFC A;  3C8T A;  3OCF A;  2QGA B;  4V2Q A;  2HVG A;  4C5S A;  1I0A A;  1Y2M A;  5EYT A;  1FUR A;  1JSW A;  2FUS A;  3R6Q A;  4C5U A;  5D6B A;  1GK3 A;  2PTS A;  1C3U A;  1TJ7 A; 
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