2J91A

Crystal structure of human adenylosuccinate lyase in complex with amp
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
470
structure length
457
Chain Sequence
b'GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Human Adenylosuccinate Lyase
rcsb
molecule keywords ADENYLOSUCCINATE LYASE
source organism Homo sapiens
molecule tags Lyase
total genus 182
structure length 457
sequence length 470
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2006-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2j91A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2j91A02
1GK2A 4V2QA 2PFMA 5EYTA 1XWOA 2O7EA 1EB4A 1FUQA 1I0AA 5EYVA 1RE5A 1GK3A 4BAAA 2O7BA 4V2RA 4FLCA 1TJWA 1FUPA 1C3CA 1W27A 5D6BA 3OCFA 2O78A 1YFEA 1J3UA 3CZOA 1GKJA 4ADMA 3GTDA 1TJUA 1FURA 1DOFA 3C8TA 4EFCA 3NZ4A 2O6YA 4C5SA 1C3UA 5F91A 1YFMA 3GZHA 2E9FA 3E04A 3RRPA 1T6PA 3R6VA 4APBA 2VD6A 2RJRA 1TJVA 3R6QA 1HY1A 2NYNA 5HW2A 3OCEA 2PTSA 1YISA 2NYFA 4C5RA 2FUSA 2OHYA 1U15A 3KDZA 4NSLA 1U16A 4ADLA 4CQ5A 1GKMA 3RD8A 1Q5NA 4NLEA 3QBPA 4C5UA 1K62A 3BHGA 2HVGA 1B8FA 5F92A 2YIIA 3NO9A 4HGVA 2J91A 4BABA 1FUOA 4FFXA 1K7WA 2O7DA 2PTQA 1JSWA 4APAA 1HY0A 1KQ7A 2O7FA 2QVEA 1T6JA 2RJSA 3KDYA 3UNVA 1DCNA 2X75A 4C6GA 1TJ7A 3TV2A 3R6YA 1AUWA 2QGAB 1Y2MA 4EEIA 2PTRA 4MX2A 1VDKA
chains in the Genus database with same CATH superfamily
1GK2A 4V2QA 2PFMA 5EYTA 1XWOA 2O7EA 1EB4A 1FUQA 1I0AA 5EYVA 1RE5A 2FELA 5M0JA 1GK3A 4BAAA 2O7BA 4V2RA 4FLCA 1TJWA 1FUPA 1C3CA 1W27A 5D6BA 3OCFA 2O78A 1YFEA 1J3UA 3CZOA 1GKJA 4ADMA 3GTDA 1TJUA 1FURA 1DOFA 3C8TA 4EFCA 3NZ4A 2O6YA 4C5SA 1C3UA 5F91A 1YFMA 3GZHA 2E9FA 3E04A 3RRPA 1T6PA 3R6VA 4APBA 1XLYA 2VD6A 2RJRA 1TJVA 3R6QA 1HY1A 2NYNA 5HW2A 3OCEA 2PTSA 1YISA 2NYFA 4C5RA 2FUSA 2OHYA 1XMCA 1U15A 3KDZA 4NSLA 1U16A 2VL7A 4ADLA 4A15A 4CQ5A 1GKMA 2VSFA 4WNLA 2FENA 3RD8A 1Q5NA 4NLEA 3CRVA 3QBPA 4C5UA 1K62A 3BHGA 1XMDA 2HVGA 1B8FA 5F92A 2YIIA 3NO9A 4HGVA 1XL7A 2J91A 4BABA 1FUOA 4FFXA 1K7WA 1XL8A 2O7DA 2PTQA 1JSWA 4APAA 1HY0A 1KQ7A 2O7FA 2QVEA 1T6JA 2RJSA 3KDYA 5H8WA 5M0IA 3UNVA 1DCNA 2X75A 4C6GA 1TJ7A 3TV2A 3R6YA 1AUWA 3CRW1 2QGAB 1Y2MA 4EEIA 2PTRA 4MX2A 1VDKA
chains in the Genus database with same CATH topology
1GK2A 4V2QA 2PFMA 5EYTA 1XWOA 2O7EA 1EB4A 1FUQA 1I0AA 5EYVA 1RE5A 1GK3A 4BAAA 2O7BA 4V2RA 4FLCA 1TJWA 1FUPA 1C3CA 1W27A 5D6BA 3OCFA 2O78A 1YFEA 1J3UA 3CZOA 1GKJA 4ADMA 3GTDA 1TJUA 1FURA 1DOFA 3C8TA 4EFCA 3NZ4A 2O6YA 4C5SA 1C3UA 5F91A 1YFMA 3GZHA 2E9FA 3E04A 3RRPA 1T6PA 3R6VA 4APBA 2VD6A 2RJRA 1TJVA 3R6QA 1HY1A 2NYNA 5HW2A 3OCEA 2PTSA 1YISA 2NYFA 4C5RA 2FUSA 2OHYA 1U15A 3KDZA 4NSLA 1U16A 4ADLA 4CQ5A 1GKMA 3RD8A 1Q5NA 4NLEA 3QBPA 4C5UA 1K62A 3BHGA 2HVGA 1B8FA 5F92A 2YIIA 3NO9A 4HGVA 2J91A 4BABA 1FUOA 4FFXA 1K7WA 2O7DA 2PTQA 1JSWA 4APAA 1HY0A 1KQ7A 2O7FA 2QVEA 1T6JA 2RJSA 3KDYA 3UNVA 1DCNA 2X75A 4C6GA 1TJ7A 3TV2A 3R6YA 1AUWA 2QGAB 1Y2MA 4EEIA 2PTRA 4MX2A 1VDKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GK2 A;  4V2Q A;  2PFM A;  5EYT A;  1XWO A;  2O7E A;  1EB4 A;  1FUQ A;  1I0A A;  5EYV A;  1RE5 A;  1GK3 A;  4BAA A;  2O7B A;  4V2R A;  4FLC A;  1TJW A;  1FUP A;  1C3C A;  1W27 A;  5D6B A;  3OCF A;  2O78 A;  1YFE A;  1J3U A;  3CZO A;  1GKJ A;  4ADM A;  3GTD A;  1TJU A;  1FUR A;  1DOF A;  3C8T A;  4EFC A;  3NZ4 A;  2O6Y A;  4C5S A;  1C3U A;  5F91 A;  1YFM A;  3GZH A;  2E9F A;  3E04 A;  3RRP A;  1T6P A;  3R6V A;  4APB A;  2VD6 A;  2RJR A;  1TJV A;  3R6Q A;  1HY1 A;  2NYN A;  5HW2 A;  3OCE A;  2PTS A;  1YIS A;  2NYF A;  4C5R A;  2FUS A;  2OHY A;  1U15 A;  3KDZ A;  4NSL A;  1U16 A;  4ADL A;  4CQ5 A;  1GKM A;  3RD8 A;  1Q5N A;  4NLE A;  3QBP A;  4C5U A;  1K62 A;  3BHG A;  2HVG A;  1B8F A;  5F92 A;  2YII A;  3NO9 A;  4HGV A;  2J91 A;  4BAB A;  1FUO A;  4FFX A;  1K7W A;  2O7D A;  2PTQ A;  1JSW A;  4APA A;  1HY0 A;  1KQ7 A;  2O7F A;  2QVE A;  1T6J A;  2RJS A;  3KDY A;  3UNV A;  1DCN A;  2X75 A;  4C6G A;  1TJ7 A;  3TV2 A;  3R6Y A;  1AUW A;  2QGA B;  1Y2M A;  4EEI A;  2PTR A;  4MX2 A;  1VDK A; 
#chains in the Genus database with same CATH topology
 1GK2 A;  4V2Q A;  2PFM A;  5EYT A;  1XWO A;  2O7E A;  1EB4 A;  1FUQ A;  1I0A A;  5EYV A;  1RE5 A;  2FEL A;  5M0J A;  1GK3 A;  4BAA A;  2O7B A;  4V2R A;  4FLC A;  1TJW A;  1FUP A;  1C3C A;  1W27 A;  5D6B A;  3OCF A;  2O78 A;  1YFE A;  1J3U A;  3CZO A;  1GKJ A;  4ADM A;  3GTD A;  1TJU A;  1FUR A;  1DOF A;  3C8T A;  4EFC A;  3NZ4 A;  2O6Y A;  4C5S A;  1C3U A;  5F91 A;  1YFM A;  3GZH A;  2E9F A;  3E04 A;  3RRP A;  1T6P A;  3R6V A;  4APB A;  1XLY A;  2VD6 A;  2RJR A;  1TJV A;  3R6Q A;  1HY1 A;  2NYN A;  5HW2 A;  3OCE A;  2PTS A;  1YIS A;  2NYF A;  4C5R A;  2FUS A;  2OHY A;  1XMC A;  1U15 A;  3KDZ A;  4NSL A;  1U16 A;  2VL7 A;  4ADL A;  4A15 A;  4CQ5 A;  1GKM A;  2VSF A;  4WNL A;  2FEN A;  3RD8 A;  1Q5N A;  4NLE A;  3CRV A;  3QBP A;  4C5U A;  1K62 A;  3BHG A;  1XMD A;  2HVG A;  1B8F A;  5F92 A;  2YII A;  3NO9 A;  4HGV A;  1XL7 A;  2J91 A;  4BAB A;  1FUO A;  4FFX A;  1K7W A;  1XL8 A;  2O7D A;  2PTQ A;  1JSW A;  4APA A;  1HY0 A;  1KQ7 A;  2O7F A;  2QVE A;  1T6J A;  2RJS A;  3KDY A;  5H8W A;  5M0I A;  3UNV A;  1DCN A;  2X75 A;  4C6G A;  1TJ7 A;  3TV2 A;  3R6Y A;  1AUW A;  3CRW 1;  2QGA B;  1Y2M A;  4EEI A;  2PTR A;  4MX2 A;  1VDK A; 
#chains in the Genus database with same CATH homology
 1GK2 A;  4V2Q A;  2PFM A;  5EYT A;  1XWO A;  2O7E A;  1EB4 A;  1FUQ A;  1I0A A;  5EYV A;  1RE5 A;  1GK3 A;  4BAA A;  2O7B A;  4V2R A;  4FLC A;  1TJW A;  1FUP A;  1C3C A;  1W27 A;  5D6B A;  3OCF A;  2O78 A;  1YFE A;  1J3U A;  3CZO A;  1GKJ A;  4ADM A;  3GTD A;  1TJU A;  1FUR A;  1DOF A;  3C8T A;  4EFC A;  3NZ4 A;  2O6Y A;  4C5S A;  1C3U A;  5F91 A;  1YFM A;  3GZH A;  2E9F A;  3E04 A;  3RRP A;  1T6P A;  3R6V A;  4APB A;  2VD6 A;  2RJR A;  1TJV A;  3R6Q A;  1HY1 A;  2NYN A;  5HW2 A;  3OCE A;  2PTS A;  1YIS A;  2NYF A;  4C5R A;  2FUS A;  2OHY A;  1U15 A;  3KDZ A;  4NSL A;  1U16 A;  4ADL A;  4CQ5 A;  1GKM A;  3RD8 A;  1Q5N A;  4NLE A;  3QBP A;  4C5U A;  1K62 A;  3BHG A;  2HVG A;  1B8F A;  5F92 A;  2YII A;  3NO9 A;  4HGV A;  2J91 A;  4BAB A;  1FUO A;  4FFX A;  1K7W A;  2O7D A;  2PTQ A;  1JSW A;  4APA A;  1HY0 A;  1KQ7 A;  2O7F A;  2QVE A;  1T6J A;  2RJS A;  3KDY A;  3UNV A;  1DCN A;  2X75 A;  4C6G A;  1TJ7 A;  3TV2 A;  3R6Y A;  1AUW A;  2QGA B;  1Y2M A;  4EEI A;  2PTR A;  4MX2 A;  1VDK A; 
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