2JA6L

Cpd lesion containing rna polymerase ii elongation complex b
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
b'ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
publication title CPD damage recognition by transcribing RNA polymerase II.
pubmed doi rcsb
molecule tags Transferase
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2006-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2ja6L00
4C2M1 3HOWL 4A3ML 3S1RL 3K7AL 4Y7NL 2E2JL 3I4NL 3S1NL 5C3EL 4A3KL 4A3DL 3GTLL 4C3IL 2JA7L 3GTKL 4Y52L 3GTGL 3H3VM 3HKZP 2NVQL 4A3CL 3RZOL 4C3HL 2NVYL 1TWGL 3S14L 1TWCL 5IYCL 3I4ML 1WCML 5IYDL 5M5XL 1R9TL 1I3QL 3S1ML 4X6AL 3GTPL 4A3IL 3HOVL 4QIWP 4A3LL 1I6HL 3S15L 3HOUL 3GTML 3FKIL 3S2DL 2Y0SP 1SFOL 1Y1VL 5FLML 1K83L 5C4JL 5M3FL 2R7ZL 2NVXL 5IYBL 4A3JL 1I50L 4BY1L 1TWFL 5IP7L 4A3BL 2WB1P 3CQZL 5M5WL 4BBRL 5FJ8L 3PO2L 2VUML 5IP9L 2B63L 3PO3L 2E2HL 2PMZP 2NVTL 2R93L 4BBSL 3M4OL 3H0GL 3GTOL 4AYBP 3S17L 3M3YL 5C4XL 1TWAL 1TWHL 4A3FL 4BY7L 3S1QL 4A3EL 3S2HL 2E2IL 4C3JL 2YU9L 4BXXL 2JA6L 2JA8L 3GTQL 3RZDL 3S16L 2R92L 1Y1WL 3GTJL 5C44L 4A3GL 2JA5L 3HOYL 3HOXL 5M3ML 4A93L 2WAQP 5M5YL 3HOZL
chains in the Genus database with same CATH superfamily
2AQCA 2H12A 4C2M1 1BRFA 2MS3A 2A6ED 1DX8A 2C6BA 3B08B 2XJUA 5C3EL 3QVDA 4B8CD 3A44A 4ZN1B 5GAEc 3H3VM 3RZOL 1VCXA 3LWOB 1TWGL 4AI0A 1YK4A 3JR7A 2XJQA 1WCML 1LKOA 4ZN3B 5MLC3 1RWDA 4A3IL 3HOVL 3S15L 1SMMA 1Y1VL 1S30A 5FLML 5C4JL 1I50L 2CKCA 3P8BA 3PIP1 1LKMA 4K9FA 5IP7L 5FJ8L 3PO2L 1T9QA 2B63L 5RXNA 3LWRB 1B2OA 2CR8A 4LHLA 2ERSA 3PKJA 1YV1A 3M4OL 3GTOL 3S17L 5C4XL 4RXNA 3HJYB 1IRNA 4BY7L 2A68D 4C3JL 2K2DA 2BE5D 2XJPA 4YWLA 3GTJL 4A3GL 4WFN1 2JA5L 5M3ML 2C6AA 1FHMA 2QL0A 2PPTA 5K2ME 1NXEA 5EINC 2CKAA 2ZIXA 4AI1A 1JYBA 1SMWA 3K7AL 3WWLA 1PZXA 2E2JL 3VPBE 1R0IA 1R0JA 5H1Sc 3LWVB 4A3KL 3RZTA 1SMUA 2JI2A 4C3IL 5JVG1 3HKZP 4A3CL 1Z92B 1CAAA 2M6OA 3FDJA 5GADc 1QYBA 1R0GA 2L0ZA 1YUXA 2KN9A 3KYXA 1PFUA 4AR5A 3NFPI 1CADA 1VZIA 1ZRPA 3H99A 2M4YA 3S1ML 5EIOC 4QIWP 1I6HL 3LWPB 3HOUL 2M6PA 5AI2A 3GTML 2DSXA 3PZAA 4TVMA 4UY81 5MF6A 6RXNA 1B13A 1QCVA 2ERJA 1C09A 5DM61 2NVXL 1IU6A 1T9OA 1B71A 3HAXC 3J7Z1 4AHYA 5IP9L 3PO3L 2Z3RB 2LCQA 1E8JA 2Z3QB 1IU5A 1NNQA 3KYYA 2R93L 3H0GL 1TWAL 2PVXA 4A3FL 3S1QL 1RDGA 4BXXL 1S2ZA 2AUSB 1Y1WL 5C44L 4G6BA 3HOYL 3HOXL 2WAQP 5MFPA 5M5YL 3HOZL 1NXGA 1RDVA 3PL5A 4A3ML 2V3BB 4YWMA 2NYDA 3I4NL 4GS7D 3KYWA 3GTLL 1BE7A 1VZHA 4XGHA 2JA7L 3GTGL 5GAHc 1P7PA 2M4VA 4C3HL 2XJRA 1B2JA 3KYUA 3P2AA 3S14L 1R0FA 2HR5A 1PFWA 1RB9A 5IYDL 5M5XL 2RDVA 1I3QL 1WJVA 3GTPL 4AI2A 3S2DL 4JAFA 1SFOL 2XJTA 5AI3A 3B0AB 2B5ID 2APOB 2AYJA 2O5JD 1TWFL 1IW7D 4A3BL 2WB1P 3WWNB 2V0EA 5GAGc 1YK5A 3KYVA 2VUML 2RFKB 2PVEA 2PMZP 5MFZA 1OWBA 3RYGA 4AI3A 4ME3A 3QQCE 2NVTL 2V0FA 1QQTA 1TWHL 3J7Y1 4POFA 2E2IL 2JA6L 3GTQL 2JA8L 4AR6A 4TPUA 4AR3A 2J9UB 1VZGA 1S24A 4A93L 8RXNA 2A69D 4JADA 4U671 3K35A 4AHWA 1T9PA 3HOWL 5JVH1 3MPSA 3PIO1 3H97A 3S1RL 4Y7NL 4XXBB 1YUZA 3S1NL 3MQKB 2PYAA 4A3DL 5DM71 1BQ9A 2JI1A 1BQ8A 2XJSA 3H9CA 3GTKL 1RYTA 4Y52L 4LHNA 2NVQL 3PKIA 2NVYL 4POGA 5AN9H 1BFYA 1PFYA 1TWCL 3LNLA 4AR4A 5IYCL 3I4ML 3RZ6A 1IROA 1R9TL 1PFVA 3HJWB 3IU3I 2PSMC 4X6AL 4JAGA 1H7VA 4A3LL 2KKDA 2GMGA 1R0HA 3FKIL 5MGNA 2Y0SP 7RXNA 1FHHA 4AHXA 4JAEA 2EY4E 1K83L 5M3FL 2R7ZL 1LTLA 2A6HD 5IYBL 4A3JL 4BY1L 2XJVA 3CQZL 1RYQA 5M5WL 4BBRL 3LPEB 2E2HL 1OWCA 3MSUA 1LKPA 2JI3A 4BBSL 4AYBP 4V196 3M3YL 3PWFA 3H9BA 4A3EL 3S2HL 2YU9L 3S16L 2HVYC 3RZDL 1F4LA 2VL6A 2R92L 4E6YA 1DVBA 5IY0A 4AHZA 3ZG6A 3SS2A 3LWQB 1ODHA
chains in the Genus database with same CATH topology
4C2M1 3HOWL 4A3ML 3S1RL 3K7AL 4Y7NL 2E2JL 3I4NL 3S1NL 5C3EL 4A3KL 4A3DL 3GTLL 4C3IL 2JA7L 3GTKL 4Y52L 3GTGL 3H3VM 3HKZP 2NVQL 4A3CL 3RZOL 4C3HL 2NVYL 1TWGL 3S14L 1TWCL 5IYCL 3I4ML 1WCML 5IYDL 5M5XL 1R9TL 1I3QL 3S1ML 4X6AL 3GTPL 4A3IL 3HOVL 4QIWP 4A3LL 1I6HL 3S15L 3HOUL 3GTML 3FKIL 3S2DL 2Y0SP 1SFOL 1Y1VL 5FLML 1K83L 5C4JL 5M3FL 2R7ZL 2NVXL 5IYBL 4A3JL 1I50L 4BY1L 1TWFL 5IP7L 4A3BL 2WB1P 3CQZL 5M5WL 4BBRL 5FJ8L 3PO2L 2VUML 5IP9L 2B63L 3PO3L 2E2HL 2PMZP 2NVTL 2R93L 4BBSL 3M4OL 3H0GL 3GTOL 4AYBP 3S17L 3M3YL 5C4XL 1TWAL 1TWHL 4A3FL 4BY7L 3S1QL 4A3EL 3S2HL 2E2IL 4C3JL 2YU9L 4BXXL 2JA6L 2JA8L 3GTQL 3RZDL 3S16L 2R92L 1Y1WL 3GTJL 5C44L 4A3GL 2JA5L 3HOYL 3HOXL 5M3ML 4A93L 2WAQP 5M5YL 3HOZL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C2M 1;  3HOW L;  4A3M L;  3S1R L;  3K7A L;  4Y7N L;  2E2J L;  3I4N L;  3S1N L;  5C3E L;  4A3K L;  4A3D L;  3GTL L;  4C3I L;  2JA7 L;  3GTK L;  4Y52 L;  3GTG L;  3H3V M;  3HKZ P;  2NVQ L;  4A3C L;  3RZO L;  4C3H L;  2NVY L;  1TWG L;  3S14 L;  1TWC L;  5IYC L;  3I4M L;  1WCM L;  5IYD L;  5M5X L;  1R9T L;  1I3Q L;  3S1M L;  4X6A L;  3GTP L;  4A3I L;  3HOV L;  4QIW P;  4A3L L;  1I6H L;  3S15 L;  3HOU L;  3GTM L;  3FKI L;  3S2D L;  2Y0S P;  1SFO L;  1Y1V L;  5FLM L;  1K83 L;  5C4J L;  5M3F L;  2R7Z L;  2NVX L;  5IYB L;  4A3J L;  1I50 L;  4BY1 L;  1TWF L;  5IP7 L;  4A3B L;  2WB1 P;  3CQZ L;  5M5W L;  4BBR L;  5FJ8 L;  3PO2 L;  2VUM L;  5IP9 L;  2B63 L;  3PO3 L;  2E2H L;  2PMZ P;  2NVT L;  2R93 L;  4BBS L;  3M4O L;  3H0G L;  3GTO L;  4AYB P;  3S17 L;  3M3Y L;  5C4X L;  1TWA L;  1TWH L;  4A3F L;  4BY7 L;  3S1Q L;  4A3E L;  3S2H L;  2E2I L;  4C3J L;  2YU9 L;  4BXX L;  2JA6 L;  2JA8 L;  3GTQ L;  3RZD L;  3S16 L;  2R92 L;  1Y1W L;  3GTJ L;  5C44 L;  4A3G L;  2JA5 L;  3HOY L;  3HOX L;  5M3M L;  4A93 L;  2WAQ P;  5M5Y L;  3HOZ L; 
#chains in the Genus database with same CATH topology
 2AQC A;  2H12 A;  4C2M 1;  1BRF A;  2MS3 A;  2A6E D;  1DX8 A;  2C6B A;  3B08 B;  2XJU A;  5C3E L;  3QVD A;  4B8C D;  3A44 A;  4ZN1 B;  5GAE c;  3H3V M;  3RZO L;  1VCX A;  3LWO B;  1TWG L;  4AI0 A;  1YK4 A;  3JR7 A;  2XJQ A;  1WCM L;  1LKO A;  4ZN3 B;  5MLC 3;  1RWD A;  4A3I L;  3HOV L;  3S15 L;  1SMM A;  1Y1V L;  1S30 A;  5FLM L;  5C4J L;  1I50 L;  2CKC A;  3P8B A;  3PIP 1;  1LKM A;  4K9F A;  5IP7 L;  5FJ8 L;  3PO2 L;  1T9Q A;  2B63 L;  5RXN A;  3LWR B;  1B2O A;  2CR8 A;  4LHL A;  2ERS A;  3PKJ A;  1YV1 A;  3M4O L;  3GTO L;  3S17 L;  5C4X L;  4RXN A;  3HJY B;  1IRN A;  4BY7 L;  2A68 D;  4C3J L;  2K2D A;  2BE5 D;  2XJP A;  4YWL A;  3GTJ L;  4A3G L;  4WFN 1;  2JA5 L;  5M3M L;  2C6A A;  1FHM A;  2QL0 A;  2PPT A;  5K2M E;  1NXE A;  5EIN C;  2CKA A;  2ZIX A;  4AI1 A;  1JYB A;  1SMW A;  3K7A L;  3WWL A;  1PZX A;  2E2J L;  3VPB E;  1R0I A;  1R0J A;  5H1S c;  3LWV B;  4A3K L;  3RZT A;  1SMU A;  2JI2 A;  4C3I L;  5JVG 1;  3HKZ P;  4A3C L;  1Z92 B;  1CAA A;  2M6O A;  3FDJ A;  5GAD c;  1QYB A;  1R0G A;  2L0Z A;  1YUX A;  2KN9 A;  3KYX A;  1PFU A;  4AR5 A;  3NFP I;  1CAD A;  1VZI A;  1ZRP A;  3H99 A;  2M4Y A;  3S1M L;  5EIO C;  4QIW P;  1I6H L;  3LWP B;  3HOU L;  2M6P A;  5AI2 A;  3GTM L;  2DSX A;  3PZA A;  4TVM A;  4UY8 1;  5MF6 A;  6RXN A;  1B13 A;  1QCV A;  2ERJ A;  1C09 A;  5DM6 1;  2NVX L;  1IU6 A;  1T9O A;  1B71 A;  3HAX C;  3J7Z 1;  4AHY A;  5IP9 L;  3PO3 L;  2Z3R B;  2LCQ A;  1E8J A;  2Z3Q B;  1IU5 A;  1NNQ A;  3KYY A;  2R93 L;  3H0G L;  1TWA L;  2PVX A;  4A3F L;  3S1Q L;  1RDG A;  4BXX L;  1S2Z A;  2AUS B;  1Y1W L;  5C44 L;  4G6B A;  3HOY L;  3HOX L;  2WAQ P;  5MFP A;  5M5Y L;  3HOZ L;  1NXG A;  1RDV A;  3PL5 A;  4A3M L;  2V3B B;  4YWM A;  2NYD A;  3I4N L;  4GS7 D;  3KYW A;  3GTL L;  1BE7 A;  1VZH A;  4XGH A;  2JA7 L;  3GTG L;  5GAH c;  1P7P A;  2M4V A;  4C3H L;  2XJR A;  1B2J A;  3KYU A;  3P2A A;  3S14 L;  1R0F A;  2HR5 A;  1PFW A;  1RB9 A;  5IYD L;  5M5X L;  2RDV A;  1I3Q L;  1WJV A;  3GTP L;  4AI2 A;  3S2D L;  4JAF A;  1SFO L;  2XJT A;  5AI3 A;  3B0A B;  2B5I D;  2APO B;  2AYJ A;  2O5J D;  1TWF L;  1IW7 D;  4A3B L;  2WB1 P;  3WWN B;  2V0E A;  5GAG c;  1YK5 A;  3KYV A;  2VUM L;  2RFK B;  2PVE A;  2PMZ P;  5MFZ A;  1OWB A;  3RYG A;  4AI3 A;  4ME3 A;  3QQC E;  2NVT L;  2V0F A;  1QQT A;  1TWH L;  3J7Y 1;  4POF A;  2E2I L;  2JA6 L;  3GTQ L;  2JA8 L;  4AR6 A;  4TPU A;  4AR3 A;  2J9U B;  1VZG A;  1S24 A;  4A93 L;  8RXN A;  2A69 D;  4JAD A;  4U67 1;  3K35 A;  4AHW A;  1T9P A;  3HOW L;  5JVH 1;  3MPS A;  3PIO 1;  3H97 A;  3S1R L;  4Y7N L;  4XXB B;  1YUZ A;  3S1N L;  3MQK B;  2PYA A;  4A3D L;  5DM7 1;  1BQ9 A;  2JI1 A;  1BQ8 A;  2XJS A;  3H9C A;  3GTK L;  1RYT A;  4Y52 L;  4LHN A;  2NVQ L;  3PKI A;  2NVY L;  4POG A;  5AN9 H;  1BFY A;  1PFY A;  1TWC L;  3LNL A;  4AR4 A;  5IYC L;  3I4M L;  3RZ6 A;  1IRO A;  1R9T L;  1PFV A;  3HJW B;  3IU3 I;  2PSM C;  4X6A L;  4JAG A;  1H7V A;  4A3L L;  2KKD A;  2GMG A;  1R0H A;  3FKI L;  5MGN A;  2Y0S P;  7RXN A;  1FHH A;  4AHX A;  4JAE A;  2EY4 E;  1K83 L;  5M3F L;  2R7Z L;  1LTL A;  2A6H D;  5IYB L;  4A3J L;  4BY1 L;  2XJV A;  3CQZ L;  1RYQ A;  5M5W L;  4BBR L;  3LPE B;  2E2H L;  1OWC A;  3MSU A;  1LKP A;  2JI3 A;  4BBS L;  4AYB P;  4V19 6;  3M3Y L;  3PWF A;  3H9B A;  4A3E L;  3S2H L;  2YU9 L;  3S16 L;  2HVY C;  3RZD L;  1F4L A;  2VL6 A;  2R92 L;  4E6Y A;  1DVB A;  5IY0 A;  4AHZ A;  3ZG6 A;  3SS2 A;  3LWQ B;  1ODH A; 
#chains in the Genus database with same CATH homology
 4C2M 1;  3HOW L;  4A3M L;  3S1R L;  3K7A L;  4Y7N L;  2E2J L;  3I4N L;  3S1N L;  5C3E L;  4A3K L;  4A3D L;  3GTL L;  4C3I L;  2JA7 L;  3GTK L;  4Y52 L;  3GTG L;  3H3V M;  3HKZ P;  2NVQ L;  4A3C L;  3RZO L;  4C3H L;  2NVY L;  1TWG L;  3S14 L;  1TWC L;  5IYC L;  3I4M L;  1WCM L;  5IYD L;  5M5X L;  1R9T L;  1I3Q L;  3S1M L;  4X6A L;  3GTP L;  4A3I L;  3HOV L;  4QIW P;  4A3L L;  1I6H L;  3S15 L;  3HOU L;  3GTM L;  3FKI L;  3S2D L;  2Y0S P;  1SFO L;  1Y1V L;  5FLM L;  1K83 L;  5C4J L;  5M3F L;  2R7Z L;  2NVX L;  5IYB L;  4A3J L;  1I50 L;  4BY1 L;  1TWF L;  5IP7 L;  4A3B L;  2WB1 P;  3CQZ L;  5M5W L;  4BBR L;  5FJ8 L;  3PO2 L;  2VUM L;  5IP9 L;  2B63 L;  3PO3 L;  2E2H L;  2PMZ P;  2NVT L;  2R93 L;  4BBS L;  3M4O L;  3H0G L;  3GTO L;  4AYB P;  3S17 L;  3M3Y L;  5C4X L;  1TWA L;  1TWH L;  4A3F L;  4BY7 L;  3S1Q L;  4A3E L;  3S2H L;  2E2I L;  4C3J L;  2YU9 L;  4BXX L;  2JA6 L;  2JA8 L;  3GTQ L;  3RZD L;  3S16 L;  2R92 L;  1Y1W L;  3GTJ L;  5C44 L;  4A3G L;  2JA5 L;  3HOY L;  3HOX L;  5M3M L;  4A93 L;  2WAQ P;  5M5Y L;  3HOZ L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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