2JA8F

Cpd lesion containing rna polymerase ii elongation complex d
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
87
structure length
87
Chain Sequence
LKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
publication title Cpd Damage Recognition by Transcribing RNA Polymerase II.
pubmed doi rcsb
total genus 24
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2006-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2ja8F00
1TWFF 1YNJK 4LLGE 1IW7E 3I4MF 5C4JF 2R93F 4Q4ZE 3S2HF 4A3FF 1I6VE 3EQLE 2O5JE 5TMCE 4BY7F 1TWGF 2CW0E 4OINE 2R92F 4X6AF 2WAQK 3HOYF 3S17F 4A3JF 3WODE 4YFNE 5E17E 3K7AF 4LK0E 5D4CE 3GTMF 4A3MF 1YNNK 2A69E 4OIQE 4BXXF 1I3QF 2NVXF 2A6EE 4KN7E 5FLMF 3CQZF 4OIRE 1I50F 4KN4E 2BE5E 4C3JF 2E2HF 3GTKF 4JK1E 3H3VG 4OIOE 3I4NF 3GTPF 2O5IE 1K83F 3S16F 1TWCF 2B63F 2Y0SI 3GTOF 2A6HE 3RZDF 1QKLA 5M5YF 3HOWF 3S1QF 1SMYE 4LK1E 5E18E 1Y1VF 5M5XF 2WB1I 3GTGF 4YFKE 4MEXE 5IP9F 5D4EE 5M3FF 4LJZE 3HOUF 1TWHF 5C4XF 5D4DE 4A3EF 3M4OF 4XSZE 3HOZF 1SFOF 5IPLE 4AYBK 3GTJF 4A3CF 1I6HF 3S15F 5TMFE 1ZYRE 3GTQF 4C2MF 5IP7F 4BY1F 2NVTF 4YFXE 4G7ZE 4A3KF 5IYBF 4XLNE 4XLPE 5C3EF 1HQME 3HOXF 2VUMF 1WCMF 4Y52F 4Y7NF 3PO2F 3S14F 2E2IF 5BYHE 4YG2E 2JA7F 4KMUE 5FJ8F 3S1NF 3FKIF 1Y1WF 2JA5F 2NVQF 3HOVF 2PPBE 4A3IF 3M3YF 5M5WF 4C3HF 4G7HE 4A93F 5IYDF 3DXJE 2E2JF 4Q5SE 4ZH4E 1TWAF 4MEYE 4A3BF 2JA6F 2A68E 4XSXE 3GTLF 3H0GF 4A3GF 4A3LF 3S2DF 3S1MF 3RZOF 3S1RF 3PO3F 4G7OE 4BBRF 5M3MF 5C44F 4OIPE 5IYCF 4BBSF 2YU9F 4A3DF 2R7ZF 4GZYE 3HKZK 4MQ9E 1R9TF 2NVYF 4C3IF 2PMZK 2JA8F
chains in the Genus database with same CATH superfamily
3M4OE 1TWFF 1YNJK 4LLGE 1IW7E 1SFOE 3I4MF 5C4JF 2R93F 4Q4ZE 3S2HF 4A3FF 1I6VE 3EQLE 2O5JE 3GTJE 5TMCE 1I6HE 3S15E 4BY7F 3GTQE 4C2ME 1TWGF 2CW0E 5IP7E 4BY1E 2NVTE 4OINE 4A3KE 2R92F 4X6AF 2WAQK 5IYBE 3HOYF 5C3EE 3S17F 3HOXE 3WODE 4YFNE 4A3JF 2VUME 4Y52E 3K7AF 4LK0E 5D4CE 4Y7NE 4A3MF 3GTMF 1YNNK 2A69E 4OIQE 3H3VF 3PO2E 4BXXF 1I3QF 2NVXF 2A6EE 4KN7E 3S14E 5FLMF 3CQZF 2E2IE 2JA7E 4OIRE 1I50F 4KN4E 2BE5E 5FJ8E 4C3JF 3FKIE 1Y1WE 2JA5E 3HOVE 2E2HF 4A3IE 3M3YE 3GTKF 4JK1E 5M5WE 4OIOE 3H3VG 4C3HE 3GTPF 3I4NF 2O5IE 4A93E 1K83F 5IYDE 3S16F 1TWCF 2B63F 2E2JE 2Y0SI 1TWAE 3GTOF 2JA8E 4A3BE 2A6HE 3RZDF 1QKLA 5M5YF 2JA6E 3HOWF 3S1QF 1SMYE 4LK1E 2R93E 5E18E 4QIWK 1Y1VF 3GTLE 3H0GE 5M5XF 4A3GE 4A3LE 2WB1I 3GTGF 4YFKE 3RZOE 3S1ME 3PO3E 3S1RE 4MEXE 5IP9F 3S2DE 3HKZH 5D4EE 5M3FF 4LJZE 3HOUF 1TWHF 5C4XF 5D4DE 4A3EF 4BBRE 3M4OF 2PMZH 5M3ME 5C44E 4XSZE 3HOZF 1SFOF 5IYCE 4BBSE 2YU9E 4AYBK 5IPLE 3GTJF 4A3CF 2Y0SH 5FLME 1I6HF 5TMFE 2R7ZE 3S15F 4A3DE 1ZYRE 3GTQF 1R9TE 4C2MF 5IP7F 4BY1F 2NVTF 2NVYE 4YFXE 4G7ZE 4A3KF 5IYBF 4C3IE 4XLNE 1EIKA 2NVQE 2WAQH 4XLPE 5C3EF 1HQME 2WB1H 3HOXF 2VUMF 1TWFE 1WCMF 4Y52F 4Y7NF 3I4ME 2KRXA 5C4JE 3PO2F 5C4XE 3S2HE 4A3FE 3S14F 1DZFA 2E2IF 5BYHE 4YG2E 2JA7F 4BY7E 4KMUE 5FJ8F 1TWGE 3S1NF 3FKIF 1Y1WF 2JA5F 2NVQF 3HOVF 2PPBE 4A3IF 3M3YF 5M5WF 2R92E 4X6AE 4C3HF 4G7HE 4A93F 3HOYE 5IYDF 3S17E 3DXJE 4A3JE 2E2JF 3K7AE 4ZH4E 4Q5SE 3GTME 4A3ME 1TWAF 4MEYE 4A3BF 4BXXE 1I3QE 2NVXE 3HOZE 2JA6F 2A68E 3CQZE 4XSXE 1I50E 4C3JE 3GTLF 3H0GF 4A3CE 4A3GF 2E2HE 4QIWH 4A3LF 3GTKE 3I4NE 3S2DF 3S1MF 3RZOF 3S1RF 3GTPE 3PO3F 1K83E 3S16E 1TWCE 2B63E 5E17E 4G7OE 3GTOE 4BBRF 5M3MF 5C44F 3RZDE 1WCME 5M5YE 3HOWE 3S1QE 4OIPE 5IYCF 4BBSF 2YU9F 1Y1VE 5M5XE 4A3DF 4AYBH 2R7ZF 3GTGE 4GZYE 3HKZK 4MQ9E 1R9TF 3S1NE 5IP9E 5M3FE 2NVYF 3HOUE 1TWHE 4C3IF 2PMZK 4A3EE 2JA8F
chains in the Genus database with same CATH topology
1TWFF 1YNJK 4LLGE 1IW7E 3I4MF 5C4JF 2R93F 4Q4ZE 3S2HF 4A3FF 1I6VE 3EQLE 2O5JE 5TMCE 4BY7F 1TWGF 2CW0E 4OINE 2R92F 4X6AF 2WAQK 3HOYF 3S17F 4A3JF 3WODE 4YFNE 5E17E 3K7AF 4LK0E 5D4CE 3GTMF 4A3MF 1YNNK 2A69E 4OIQE 4BXXF 1I3QF 2NVXF 2A6EE 4KN7E 5FLMF 3CQZF 4OIRE 1I50F 4KN4E 2BE5E 4C3JF 2E2HF 3GTKF 4JK1E 3H3VG 4OIOE 3I4NF 3GTPF 2O5IE 1K83F 3S16F 1TWCF 2B63F 2Y0SI 3GTOF 2A6HE 3RZDF 1QKLA 5M5YF 3HOWF 3S1QF 1SMYE 4LK1E 5E18E 4QIWK 1Y1VF 5M5XF 2WB1I 3GTGF 4YFKE 4MEXE 5IP9F 5D4EE 5M3FF 4LJZE 3HOUF 1TWHF 5C4XF 5D4DE 4A3EF 3M4OF 4XSZE 3HOZF 1SFOF 5IPLE 4AYBK 3GTJF 4A3CF 1I6HF 3S15F 5TMFE 1ZYRE 3GTQF 4C2MF 5IP7F 4BY1F 2NVTF 4YFXE 4G7ZE 4A3KF 5IYBF 4XLNE 4XLPE 5C3EF 1HQME 3HOXF 2VUMF 1WCMF 4Y52F 4Y7NF 2KRXA 3PO2F 3S14F 2E2IF 5BYHE 4YG2E 2JA7F 4KMUE 5FJ8F 3S1NF 3FKIF 1Y1WF 2JA5F 2NVQF 3HOVF 2PPBE 4A3IF 3M3YF 5M5WF 4C3HF 4G7HE 4A93F 5IYDF 3DXJE 2E2JF 4Q5SE 4ZH4E 1TWAF 4MEYE 4A3BF 2JA6F 2A68E 4XSXE 3GTLF 3H0GF 4A3GF 4A3LF 3S2DF 3S1MF 3RZOF 3S1RF 3PO3F 4G7OE 4BBRF 5M3MF 5C44F 4OIPE 5IYCF 4BBSF 2YU9F 4A3DF 2R7ZF 4GZYE 3HKZK 4MQ9E 1R9TF 2NVYF 4C3IF 2PMZK 2JA8F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TWF F;  1YNJ K;  4LLG E;  1IW7 E;  3I4M F;  5C4J F;  2R93 F;  4Q4Z E;  3S2H F;  4A3F F;  1I6V E;  3EQL E;  2O5J E;  5TMC E;  4BY7 F;  1TWG F;  2CW0 E;  4OIN E;  2R92 F;  4X6A F;  2WAQ K;  3HOY F;  3S17 F;  4A3J F;  3WOD E;  4YFN E;  5E17 E;  3K7A F;  4LK0 E;  5D4C E;  3GTM F;  4A3M F;  1YNN K;  2A69 E;  4OIQ E;  4BXX F;  1I3Q F;  2NVX F;  2A6E E;  4KN7 E;  5FLM F;  3CQZ F;  4OIR E;  1I50 F;  4KN4 E;  2BE5 E;  4C3J F;  2E2H F;  3GTK F;  4JK1 E;  3H3V G;  4OIO E;  3I4N F;  3GTP F;  2O5I E;  1K83 F;  3S16 F;  1TWC F;  2B63 F;  2Y0S I;  3GTO F;  2A6H E;  3RZD F;  1QKL A;  5M5Y F;  3HOW F;  3S1Q F;  1SMY E;  4LK1 E;  5E18 E;  1Y1V F;  5M5X F;  2WB1 I;  3GTG F;  4YFK E;  4MEX E;  5IP9 F;  5D4E E;  5M3F F;  4LJZ E;  3HOU F;  1TWH F;  5C4X F;  5D4D E;  4A3E F;  3M4O F;  4XSZ E;  3HOZ F;  1SFO F;  5IPL E;  4AYB K;  3GTJ F;  4A3C F;  1I6H F;  3S15 F;  5TMF E;  1ZYR E;  3GTQ F;  4C2M F;  5IP7 F;  4BY1 F;  2NVT F;  4YFX E;  4G7Z E;  4A3K F;  5IYB F;  4XLN E;  4XLP E;  5C3E F;  1HQM E;  3HOX F;  2VUM F;  1WCM F;  4Y52 F;  4Y7N F;  3PO2 F;  3S14 F;  2E2I F;  5BYH E;  4YG2 E;  2JA7 F;  4KMU E;  5FJ8 F;  3S1N F;  3FKI F;  1Y1W F;  2JA5 F;  2NVQ F;  3HOV F;  2PPB E;  4A3I F;  3M3Y F;  5M5W F;  4C3H F;  4G7H E;  4A93 F;  5IYD F;  3DXJ E;  2E2J F;  4Q5S E;  4ZH4 E;  1TWA F;  4MEY E;  4A3B F;  2JA6 F;  2A68 E;  4XSX E;  3GTL F;  3H0G F;  4A3G F;  4A3L F;  3S2D F;  3S1M F;  3RZO F;  3S1R F;  3PO3 F;  4G7O E;  4BBR F;  5M3M F;  5C44 F;  4OIP E;  5IYC F;  4BBS F;  2YU9 F;  4A3D F;  2R7Z F;  4GZY E;  3HKZ K;  4MQ9 E;  1R9T F;  2NVY F;  4C3I F;  2PMZ K;  2JA8 F; 
#chains in the Genus database with same CATH topology
 3M4O E;  1TWF F;  1YNJ K;  4LLG E;  1IW7 E;  1SFO E;  3I4M F;  5C4J F;  2R93 F;  4Q4Z E;  3S2H F;  4A3F F;  1I6V E;  3EQL E;  2O5J E;  3GTJ E;  5TMC E;  1I6H E;  3S15 E;  4BY7 F;  3GTQ E;  4C2M E;  1TWG F;  2CW0 E;  5IP7 E;  4BY1 E;  2NVT E;  4OIN E;  4A3K E;  2R92 F;  4X6A F;  2WAQ K;  5IYB E;  3HOY F;  5C3E E;  3S17 F;  3HOX E;  3WOD E;  4YFN E;  4A3J F;  2VUM E;  4Y52 E;  3K7A F;  4LK0 E;  5D4C E;  4Y7N E;  4A3M F;  3GTM F;  1YNN K;  2A69 E;  4OIQ E;  3H3V F;  3PO2 E;  4BXX F;  1I3Q F;  2NVX F;  2A6E E;  4KN7 E;  3S14 E;  5FLM F;  3CQZ F;  2E2I E;  2JA7 E;  4OIR E;  1I50 F;  4KN4 E;  2BE5 E;  5FJ8 E;  4C3J F;  3FKI E;  1Y1W E;  2JA5 E;  3HOV E;  2E2H F;  4A3I E;  3M3Y E;  3GTK F;  4JK1 E;  5M5W E;  4OIO E;  3H3V G;  4C3H E;  3GTP F;  3I4N F;  2O5I E;  4A93 E;  1K83 F;  5IYD E;  3S16 F;  1TWC F;  2B63 F;  2E2J E;  2Y0S I;  1TWA E;  3GTO F;  2JA8 E;  4A3B E;  2A6H E;  3RZD F;  1QKL A;  5M5Y F;  2JA6 E;  3HOW F;  3S1Q F;  1SMY E;  4LK1 E;  2R93 E;  5E18 E;  4QIW K;  1Y1V F;  3GTL E;  3H0G E;  5M5X F;  4A3G E;  4A3L E;  2WB1 I;  3GTG F;  4YFK E;  3RZO E;  3S1M E;  3PO3 E;  3S1R E;  4MEX E;  5IP9 F;  3S2D E;  3HKZ H;  5D4E E;  5M3F F;  4LJZ E;  3HOU F;  1TWH F;  5C4X F;  5D4D E;  4A3E F;  4BBR E;  3M4O F;  2PMZ H;  5M3M E;  5C44 E;  4XSZ E;  3HOZ F;  1SFO F;  5IYC E;  4BBS E;  2YU9 E;  4AYB K;  5IPL E;  3GTJ F;  4A3C F;  2Y0S H;  5FLM E;  1I6H F;  5TMF E;  2R7Z E;  3S15 F;  4A3D E;  1ZYR E;  3GTQ F;  1R9T E;  4C2M F;  5IP7 F;  4BY1 F;  2NVT F;  2NVY E;  4YFX E;  4G7Z E;  4A3K F;  5IYB F;  4C3I E;  4XLN E;  1EIK A;  2NVQ E;  2WAQ H;  4XLP E;  5C3E F;  1HQM E;  2WB1 H;  3HOX F;  2VUM F;  1TWF E;  1WCM F;  4Y52 F;  4Y7N F;  3I4M E;  2KRX A;  5C4J E;  3PO2 F;  5C4X E;  3S2H E;  4A3F E;  3S14 F;  1DZF A;  2E2I F;  5BYH E;  4YG2 E;  2JA7 F;  4BY7 E;  4KMU E;  5FJ8 F;  1TWG E;  3S1N F;  3FKI F;  1Y1W F;  2JA5 F;  2NVQ F;  3HOV F;  2PPB E;  4A3I F;  3M3Y F;  5M5W F;  2R92 E;  4X6A E;  4C3H F;  4G7H E;  4A93 F;  3HOY E;  5IYD F;  3S17 E;  3DXJ E;  4A3J E;  2E2J F;  3K7A E;  4ZH4 E;  4Q5S E;  3GTM E;  4A3M E;  1TWA F;  4MEY E;  4A3B F;  4BXX E;  1I3Q E;  2NVX E;  3HOZ E;  2JA6 F;  2A68 E;  3CQZ E;  4XSX E;  1I50 E;  4C3J E;  3GTL F;  3H0G F;  4A3C E;  4A3G F;  2E2H E;  4QIW H;  4A3L F;  3GTK E;  3I4N E;  3S2D F;  3S1M F;  3RZO F;  3S1R F;  3GTP E;  3PO3 F;  1K83 E;  3S16 E;  1TWC E;  2B63 E;  5E17 E;  4G7O E;  3GTO E;  4BBR F;  5M3M F;  5C44 F;  3RZD E;  1WCM E;  5M5Y E;  3HOW E;  3S1Q E;  4OIP E;  5IYC F;  4BBS F;  2YU9 F;  1Y1V E;  5M5X E;  4A3D F;  4AYB H;  2R7Z F;  3GTG E;  4GZY E;  3HKZ K;  4MQ9 E;  1R9T F;  3S1N E;  5IP9 E;  5M3F E;  2NVY F;  3HOU E;  1TWH E;  4C3I F;  2PMZ K;  4A3E E;  2JA8 F; 
#chains in the Genus database with same CATH homology
 1TWF F;  1YNJ K;  4LLG E;  1IW7 E;  3I4M F;  5C4J F;  2R93 F;  4Q4Z E;  3S2H F;  4A3F F;  1I6V E;  3EQL E;  2O5J E;  5TMC E;  4BY7 F;  1TWG F;  2CW0 E;  4OIN E;  2R92 F;  4X6A F;  2WAQ K;  3HOY F;  3S17 F;  4A3J F;  3WOD E;  4YFN E;  5E17 E;  3K7A F;  4LK0 E;  5D4C E;  3GTM F;  4A3M F;  1YNN K;  2A69 E;  4OIQ E;  4BXX F;  1I3Q F;  2NVX F;  2A6E E;  4KN7 E;  5FLM F;  3CQZ F;  4OIR E;  1I50 F;  4KN4 E;  2BE5 E;  4C3J F;  2E2H F;  3GTK F;  4JK1 E;  3H3V G;  4OIO E;  3I4N F;  3GTP F;  2O5I E;  1K83 F;  3S16 F;  1TWC F;  2B63 F;  2Y0S I;  3GTO F;  2A6H E;  3RZD F;  1QKL A;  5M5Y F;  3HOW F;  3S1Q F;  1SMY E;  4LK1 E;  5E18 E;  4QIW K;  1Y1V F;  5M5X F;  2WB1 I;  3GTG F;  4YFK E;  4MEX E;  5IP9 F;  5D4E E;  5M3F F;  4LJZ E;  3HOU F;  1TWH F;  5C4X F;  5D4D E;  4A3E F;  3M4O F;  4XSZ E;  3HOZ F;  1SFO F;  5IPL E;  4AYB K;  3GTJ F;  4A3C F;  1I6H F;  3S15 F;  5TMF E;  1ZYR E;  3GTQ F;  4C2M F;  5IP7 F;  4BY1 F;  2NVT F;  4YFX E;  4G7Z E;  4A3K F;  5IYB F;  4XLN E;  4XLP E;  5C3E F;  1HQM E;  3HOX F;  2VUM F;  1WCM F;  4Y52 F;  4Y7N F;  2KRX A;  3PO2 F;  3S14 F;  2E2I F;  5BYH E;  4YG2 E;  2JA7 F;  4KMU E;  5FJ8 F;  3S1N F;  3FKI F;  1Y1W F;  2JA5 F;  2NVQ F;  3HOV F;  2PPB E;  4A3I F;  3M3Y F;  5M5W F;  4C3H F;  4G7H E;  4A93 F;  5IYD F;  3DXJ E;  2E2J F;  4Q5S E;  4ZH4 E;  1TWA F;  4MEY E;  4A3B F;  2JA6 F;  2A68 E;  4XSX E;  3GTL F;  3H0G F;  4A3G F;  4A3L F;  3S2D F;  3S1M F;  3RZO F;  3S1R F;  3PO3 F;  4G7O E;  4BBR F;  5M3M F;  5C44 F;  4OIP E;  5IYC F;  4BBS F;  2YU9 F;  4A3D F;  2R7Z F;  4GZY E;  3HKZ K;  4MQ9 E;  1R9T F;  2NVY F;  4C3I F;  2PMZ K;  2JA8 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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