2JAIA

Ddah1 complexed with citrulline
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
273
structure length
271
Chain Sequence
AFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSVLINK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords NG, NG-DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1
publication title Disruption of methylarginine metabolism impairs vascular homeostasis.
pubmed doi rcsb
source organism Homo sapiens
total genus 80
structure length 271
sequence length 273
chains with identical sequence B
ec nomenclature ec 3.5.3.18: Dimethylargininase.
pdb deposition date 2006-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2jaiA00
3HVMA 4N2FA 1JDXA 1RXXA 4N2KA 5AK7A 3B1UA 4N20A 1WDAA 2CI4A 1BWDA 3RHYA 1WD8A 2JAIA 4N28A 3I4AA 3JDWA 7JDWA 5JDWA 3BPBA 2ACIA 3I2EA 4N25A 1S9RA 5AN9I 2DEWX 2JERA 2JAJA 3P8EA 3APNA 4YTGA 2DEXX 1G61A 1G62A 2C6ZA 4BOFA 6JDWA 2EWOA 8JDWA 1VKPA 4N24A 4N2DA 2CI5A 2JDXA 1ZBRA 3H7CX 2Q3UA 2CI7A 4N2LA 4N2BA 2AAFA 4N2NA 4YT9A 4N22A 4X8GA 3H7KA 4N2MA 2DW5A 4N2CA 4DKTA 4X8CA 5M3QA 1LXYA 5HP5A 1WD9A 4N2IA 1H70A 3B1TA 3P8PA 5AK8A 2CI3A 2CMUA 4E4JA 4N2HA 4JDWA 3APMA 4N2GA 9JDWA 1XKNA 4N2EA 1JDWA 2ABRA 2A9GA 4N26A 2DEYX 2CI6A 2CI1A 2JDWA 4N2AA 4YTBA
chains in the Genus database with same CATH superfamily
3HVMA 4N2FA 1JDXA 1RXXA 4N2KA 5AK7A 3B1UA 4N20A 1WDAA 2CI4A 1BWDA 3RHYA 1WD8A 2JAIA 4N28A 3I4AA 3JDWA 7JDWA 5JDWA 3BPBA 2ACIA 3I2EA 4N25A 1S9RA 5AN9I 2DEWX 2JERA 2JAJA 3P8EA 3APNA 4YTGA 2DEXX 1G61A 1G62A 2C6ZA 4BOFA 6JDWA 2EWOA 8JDWA 1VKPA 1YNFA 4N24A 4N2DA 1YNIA 2CI5A 2JDXA 1ZBRA 3H7CX 2Q3UA 2CI7A 4N2LA 4N2BA 2AAFA 4N2NA 4YT9A 4N22A 4X8GA 3H7KA 4N2MA 2DW5A 4N2CA 4DKTA 4X8CA 5M3QA 1LXYA 5HP5A 1WD9A 4N2IA 1H70A 3B1TA 3P8PA 5AK8A 2CI3A 2CMUA 4E4JA 4N2HA 4JDWA 3APMA 4N2GA 9JDWA 1XKNA 4N2EA 1JDWA 2ABRA 2A9GA 4N26A 2DEYX 1YNHA 2CI6A 2CI1A 2JDWA 4N2AA 4YTBA
chains in the Genus database with same CATH topology
3HVMA 4N2FA 1JDXA 1RXXA 4N2KA 5AK7A 3B1UA 4N20A 1WDAA 2CI4A 1BWDA 3RHYA 1WD8A 2JAIA 4N28A 3I4AA 3JDWA 7JDWA 5JDWA 3BPBA 2ACIA 3I2EA 4N25A 1S9RA 5AN9I 2DEWX 2JERA 2JAJA 3P8EA 3APNA 4YTGA 2DEXX 1G61A 1G62A 2C6ZA 4BOFA 6JDWA 2EWOA 8JDWA 1VKPA 4N24A 4N2DA 2CI5A 2JDXA 1ZBRA 3H7CX 2Q3UA 2CI7A 4N2LA 4N2BA 2AAFA 4N2NA 4YT9A 4N22A 4X8GA 3H7KA 4N2MA 2DW5A 4N2CA 4DKTA 4X8CA 5M3QA 1LXYA 5HP5A 1WD9A 4N2IA 1H70A 3B1TA 3P8PA 5AK8A 2CI3A 2CMUA 4E4JA 4N2HA 4JDWA 3APMA 4N2GA 9JDWA 1XKNA 4N2EA 1JDWA 2ABRA 2A9GA 4N26A 2DEYX 2CI6A 2CI1A 2JDWA 4N2AA 4YTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HVM A;  4N2F A;  1JDX A;  1RXX A;  4N2K A;  5AK7 A;  3B1U A;  4N20 A;  1WDA A;  2CI4 A;  1BWD A;  3RHY A;  1WD8 A;  2JAI A;  4N28 A;  3I4A A;  3JDW A;  7JDW A;  5JDW A;  3BPB A;  2ACI A;  3I2E A;  4N25 A;  1S9R A;  5AN9 I;  2DEW X;  2JER A;  2JAJ A;  3P8E A;  3APN A;  4YTG A;  2DEX X;  1G61 A;  1G62 A;  2C6Z A;  4BOF A;  6JDW A;  2EWO A;  8JDW A;  1VKP A;  4N24 A;  4N2D A;  2CI5 A;  2JDX A;  1ZBR A;  3H7C X;  2Q3U A;  2CI7 A;  4N2L A;  4N2B A;  2AAF A;  4N2N A;  4YT9 A;  4N22 A;  4X8G A;  3H7K A;  4N2M A;  2DW5 A;  4N2C A;  4DKT A;  4X8C A;  5M3Q A;  1LXY A;  5HP5 A;  1WD9 A;  4N2I A;  1H70 A;  3B1T A;  3P8P A;  5AK8 A;  2CI3 A;  2CMU A;  4E4J A;  4N2H A;  4JDW A;  3APM A;  4N2G A;  9JDW A;  1XKN A;  4N2E A;  1JDW A;  2ABR A;  2A9G A;  4N26 A;  2DEY X;  2CI6 A;  2CI1 A;  2JDW A;  4N2A A;  4YTB A; 
#chains in the Genus database with same CATH topology
 3HVM A;  4N2F A;  1JDX A;  1RXX A;  4N2K A;  5AK7 A;  3B1U A;  4N20 A;  1WDA A;  2CI4 A;  1BWD A;  3RHY A;  1WD8 A;  2JAI A;  4N28 A;  3I4A A;  3JDW A;  7JDW A;  5JDW A;  3BPB A;  2ACI A;  3I2E A;  4N25 A;  1S9R A;  5AN9 I;  2DEW X;  2JER A;  2JAJ A;  3P8E A;  3APN A;  4YTG A;  2DEX X;  1G61 A;  1G62 A;  2C6Z A;  4BOF A;  6JDW A;  2EWO A;  8JDW A;  1VKP A;  1YNF A;  4N24 A;  4N2D A;  1YNI A;  2CI5 A;  2JDX A;  1ZBR A;  3H7C X;  2Q3U A;  2CI7 A;  4N2L A;  4N2B A;  2AAF A;  4N2N A;  4YT9 A;  4N22 A;  4X8G A;  3H7K A;  4N2M A;  2DW5 A;  4N2C A;  4DKT A;  4X8C A;  5M3Q A;  1LXY A;  5HP5 A;  1WD9 A;  4N2I A;  1H70 A;  3B1T A;  3P8P A;  5AK8 A;  2CI3 A;  2CMU A;  4E4J A;  4N2H A;  4JDW A;  3APM A;  4N2G A;  9JDW A;  1XKN A;  4N2E A;  1JDW A;  2ABR A;  2A9G A;  4N26 A;  2DEY X;  1YNH A;  2CI6 A;  2CI1 A;  2JDW A;  4N2A A;  4YTB A; 
#chains in the Genus database with same CATH homology
 3HVM A;  4N2F A;  1JDX A;  1RXX A;  4N2K A;  5AK7 A;  3B1U A;  4N20 A;  1WDA A;  2CI4 A;  1BWD A;  3RHY A;  1WD8 A;  2JAI A;  4N28 A;  3I4A A;  3JDW A;  7JDW A;  5JDW A;  3BPB A;  2ACI A;  3I2E A;  4N25 A;  1S9R A;  5AN9 I;  2DEW X;  2JER A;  2JAJ A;  3P8E A;  3APN A;  4YTG A;  2DEX X;  1G61 A;  1G62 A;  2C6Z A;  4BOF A;  6JDW A;  2EWO A;  8JDW A;  1VKP A;  4N24 A;  4N2D A;  2CI5 A;  2JDX A;  1ZBR A;  3H7C X;  2Q3U A;  2CI7 A;  4N2L A;  4N2B A;  2AAF A;  4N2N A;  4YT9 A;  4N22 A;  4X8G A;  3H7K A;  4N2M A;  2DW5 A;  4N2C A;  4DKT A;  4X8C A;  5M3Q A;  1LXY A;  5HP5 A;  1WD9 A;  4N2I A;  1H70 A;  3B1T A;  3P8P A;  5AK8 A;  2CI3 A;  2CMU A;  4E4J A;  4N2H A;  4JDW A;  3APM A;  4N2G A;  9JDW A;  1XKN A;  4N2E A;  1JDW A;  2ABR A;  2A9G A;  4N26 A;  2DEY X;  2CI6 A;  2CI1 A;  2JDW A;  4N2A A;  4YTB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...