2JDXA

Crystal structure of human l-arginine:glycine amidinotransferase, deletionmutant atdeltam302
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
359
structure length
359
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
source organism Homo sapiens
total genus 116
structure length 359
sequence length 359
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2jdxA00
4DKTA 1JDXA 2CMUA 4N28A 4N26A 2JAJA 2Q3UA 1WDAA 2JDXA 1WD8A 4E4JA 2CI7A 3I4AA 2DEXX 5AK7A 3H7KA 4YTGA 5JDWA 2JDWA 1BWDA 5AK8A 1XKNA 2CI1A 2EWOA 1S9RA 3B1TA 3APMA 4N2FA 4N24A 4N2NA 4N2CA 3H7CX 5AN9I 1LXYA 3HVMA 4YTBA 4N2MA 1G62A 4X8GA 6JDWA 4N2HA 2JAIA 4X8CA 2CI5A 2CI4A 2ABRA 2AAFA 4N2LA 3I2EA 9JDWA 3BPBA 4N2DA 2C6ZA 2A9GA 3JDWA 8JDWA 4N2EA 5HP5A 1JDWA 1G61A 4N2AA 3P8PA 2CI6A 3RHYA 4N2KA 2DEWX 4N2GA 1H70A 3P8EA 3APNA 4N2BA 2DEYX 4N2IA 2JERA 4YT9A 4BOFA 1ZBRA 5M3QA 1RXXA 4N25A 4N20A 1VKPA 2DW5A 4N22A 3B1UA 2ACIA 1WD9A 4JDWA 2CI3A 7JDWA
chains in the Genus database with same CATH superfamily
4DKTA 1JDXA 2CMUA 4N28A 4N26A 2JAJA 2Q3UA 1WDAA 2JDXA 1WD8A 4E4JA 2CI7A 3I4AA 2DEXX 5AK7A 3H7KA 4YTGA 5JDWA 2JDWA 1BWDA 5AK8A 1XKNA 2CI1A 2EWOA 1YNFA 1S9RA 1YNIA 3B1TA 3APMA 4N2FA 4N24A 4N2NA 4N2CA 3H7CX 5AN9I 1LXYA 3HVMA 4YTBA 4N2MA 1G62A 4X8GA 6JDWA 4N2HA 2JAIA 4X8CA 2CI5A 2CI4A 2ABRA 1YNHA 2AAFA 4N2LA 3I2EA 9JDWA 3BPBA 4N2DA 2C6ZA 2A9GA 3JDWA 8JDWA 4N2EA 5HP5A 1JDWA 1G61A 4N2AA 3P8PA 2CI6A 3RHYA 4N2KA 2DEWX 4N2GA 1H70A 3P8EA 3APNA 4N2BA 2DEYX 4N2IA 2JERA 4YT9A 4BOFA 1ZBRA 5M3QA 1RXXA 4N25A 4N20A 1VKPA 2DW5A 4N22A 3B1UA 2ACIA 1WD9A 4JDWA 2CI3A 7JDWA
chains in the Genus database with same CATH topology
4DKTA 1JDXA 2CMUA 4N28A 4N26A 2JAJA 2Q3UA 1WDAA 2JDXA 1WD8A 4E4JA 2CI7A 3I4AA 2DEXX 5AK7A 3H7KA 4YTGA 5JDWA 2JDWA 1BWDA 5AK8A 1XKNA 2CI1A 2EWOA 1S9RA 3B1TA 3APMA 4N2FA 4N24A 4N2NA 4N2CA 3H7CX 5AN9I 1LXYA 3HVMA 4YTBA 4N2MA 1G62A 4X8GA 6JDWA 4N2HA 2JAIA 4X8CA 2CI5A 2CI4A 2ABRA 2AAFA 4N2LA 3I2EA 9JDWA 3BPBA 4N2DA 2C6ZA 2A9GA 3JDWA 8JDWA 4N2EA 5HP5A 1JDWA 1G61A 4N2AA 3P8PA 2CI6A 3RHYA 4N2KA 2DEWX 4N2GA 1H70A 3P8EA 3APNA 4N2BA 2DEYX 4N2IA 2JERA 4YT9A 4BOFA 1ZBRA 5M3QA 1RXXA 4N25A 4N20A 1VKPA 2DW5A 4N22A 3B1UA 2ACIA 1WD9A 4JDWA 2CI3A 7JDWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DKT A;  1JDX A;  2CMU A;  4N28 A;  4N26 A;  2JAJ A;  2Q3U A;  1WDA A;  2JDX A;  1WD8 A;  4E4J A;  2CI7 A;  3I4A A;  2DEX X;  5AK7 A;  3H7K A;  4YTG A;  5JDW A;  2JDW A;  1BWD A;  5AK8 A;  1XKN A;  2CI1 A;  2EWO A;  1S9R A;  3B1T A;  3APM A;  4N2F A;  4N24 A;  4N2N A;  4N2C A;  3H7C X;  5AN9 I;  1LXY A;  3HVM A;  4YTB A;  4N2M A;  1G62 A;  4X8G A;  6JDW A;  4N2H A;  2JAI A;  4X8C A;  2CI5 A;  2CI4 A;  2ABR A;  2AAF A;  4N2L A;  3I2E A;  9JDW A;  3BPB A;  4N2D A;  2C6Z A;  2A9G A;  3JDW A;  8JDW A;  4N2E A;  5HP5 A;  1JDW A;  1G61 A;  4N2A A;  3P8P A;  2CI6 A;  3RHY A;  4N2K A;  2DEW X;  4N2G A;  1H70 A;  3P8E A;  3APN A;  4N2B A;  2DEY X;  4N2I A;  2JER A;  4YT9 A;  4BOF A;  1ZBR A;  5M3Q A;  1RXX A;  4N25 A;  4N20 A;  1VKP A;  2DW5 A;  4N22 A;  3B1U A;  2ACI A;  1WD9 A;  4JDW A;  2CI3 A;  7JDW A; 
#chains in the Genus database with same CATH topology
 4DKT A;  1JDX A;  2CMU A;  4N28 A;  4N26 A;  2JAJ A;  2Q3U A;  1WDA A;  2JDX A;  1WD8 A;  4E4J A;  2CI7 A;  3I4A A;  2DEX X;  5AK7 A;  3H7K A;  4YTG A;  5JDW A;  2JDW A;  1BWD A;  5AK8 A;  1XKN A;  2CI1 A;  2EWO A;  1YNF A;  1S9R A;  1YNI A;  3B1T A;  3APM A;  4N2F A;  4N24 A;  4N2N A;  4N2C A;  3H7C X;  5AN9 I;  1LXY A;  3HVM A;  4YTB A;  4N2M A;  1G62 A;  4X8G A;  6JDW A;  4N2H A;  2JAI A;  4X8C A;  2CI5 A;  2CI4 A;  2ABR A;  1YNH A;  2AAF A;  4N2L A;  3I2E A;  9JDW A;  3BPB A;  4N2D A;  2C6Z A;  2A9G A;  3JDW A;  8JDW A;  4N2E A;  5HP5 A;  1JDW A;  1G61 A;  4N2A A;  3P8P A;  2CI6 A;  3RHY A;  4N2K A;  2DEW X;  4N2G A;  1H70 A;  3P8E A;  3APN A;  4N2B A;  2DEY X;  4N2I A;  2JER A;  4YT9 A;  4BOF A;  1ZBR A;  5M3Q A;  1RXX A;  4N25 A;  4N20 A;  1VKP A;  2DW5 A;  4N22 A;  3B1U A;  2ACI A;  1WD9 A;  4JDW A;  2CI3 A;  7JDW A; 
#chains in the Genus database with same CATH homology
 4DKT A;  1JDX A;  2CMU A;  4N28 A;  4N26 A;  2JAJ A;  2Q3U A;  1WDA A;  2JDX A;  1WD8 A;  4E4J A;  2CI7 A;  3I4A A;  2DEX X;  5AK7 A;  3H7K A;  4YTG A;  5JDW A;  2JDW A;  1BWD A;  5AK8 A;  1XKN A;  2CI1 A;  2EWO A;  1S9R A;  3B1T A;  3APM A;  4N2F A;  4N24 A;  4N2N A;  4N2C A;  3H7C X;  5AN9 I;  1LXY A;  3HVM A;  4YTB A;  4N2M A;  1G62 A;  4X8G A;  6JDW A;  4N2H A;  2JAI A;  4X8C A;  2CI5 A;  2CI4 A;  2ABR A;  2AAF A;  4N2L A;  3I2E A;  9JDW A;  3BPB A;  4N2D A;  2C6Z A;  2A9G A;  3JDW A;  8JDW A;  4N2E A;  5HP5 A;  1JDW A;  1G61 A;  4N2A A;  3P8P A;  2CI6 A;  3RHY A;  4N2K A;  2DEW X;  4N2G A;  1H70 A;  3P8E A;  3APN A;  4N2B A;  2DEY X;  4N2I A;  2JER A;  4YT9 A;  4BOF A;  1ZBR A;  5M3Q A;  1RXX A;  4N25 A;  4N20 A;  1VKP A;  2DW5 A;  4N22 A;  3B1U A;  2ACI A;  1WD9 A;  4JDW A;  2CI3 A;  7JDW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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