2JIAA

Type iii antifreeze protein isoform hplc 12 k61i
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVIGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 2jiaA00
4IPJA 1C89A 4UR6A 1B7IA 3NLAA 2LX2A 1OPSA 2WQPA 2MSIA 1MSJA 1XUZA 3G8RA 2ZDRA 3MSIA 9AMEA 1KDEA 1MSIA 3CM4A 3RDNA 2SPGA 8MSIA 1KDFA 1UCSA 6AMEA 4IPIA 1EKLA 1WVOA 2MSJA 1C8AA 7AMEA 4UR4A 3QF6A 8AMEA 1GZIA 3AMEA 1XUUA 4AMEA 6MSIA 1AMEA 1B7JA 3FRNA 1VLIA 1HG7A 4MSIA 7MSIA 4NY6A 2JIAA 2AMEA 2LX3A 1B7KA 9MSIA 5MSIA 1JABA
chains in the Genus database with same CATH superfamily
4IPJA 1C89A 4UR6A 1B7IA 3NLAA 2LX2A 1OPSA 2WQPA 2MSIA 1MSJA 1XUZA 3G8RA 2ZDRA 3MSIA 3K3SA 9AMEA 1KDEA 1MSIA 3CM4A 3RDNA 2SPGA 8MSIA 1KDFA 1UCSA 6AMEA 4IPIA 1EKLA 1WVOA 2MSJA 1C8AA 7AMEA 4UR4A 3QF6A 8AMEA 1GZIA 3AMEA 1XUUA 4AMEA 6MSIA 1AMEA 1B7JA 3FRNA 1VLIA 1HG7A 3LAZA 4MSIA 7MSIA 4NY6A 2JIAA 2AMEA 2LX3A 1B7KA 9MSIA 5MSIA 1JABA
chains in the Genus database with same CATH topology
4IPJA 1C89A 4UR6A 1B7IA 3NLAA 2LX2A 1OPSA 2WQPA 2MSIA 1MSJA 1XUZA 3G8RA 2ZDRA 3MSIA 9AMEA 1KDEA 1MSIA 3CM4A 3RDNA 2SPGA 8MSIA 1KDFA 1UCSA 6AMEA 4IPIA 1EKLA 1WVOA 2MSJA 1C8AA 7AMEA 4UR4A 3QF6A 8AMEA 1GZIA 3AMEA 1XUUA 4AMEA 6MSIA 1AMEA 1B7JA 3FRNA 1VLIA 1HG7A 4MSIA 7MSIA 4NY6A 2JIAA 2AMEA 2LX3A 1B7KA 9MSIA 5MSIA 1JABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IPJ A;  1C89 A;  4UR6 A;  1B7I A;  3NLA A;  2LX2 A;  1OPS A;  2WQP A;  2MSI A;  1MSJ A;  1XUZ A;  3G8R A;  2ZDR A;  3MSI A;  9AME A;  1KDE A;  1MSI A;  3CM4 A;  3RDN A;  2SPG A;  8MSI A;  1KDF A;  1UCS A;  6AME A;  4IPI A;  1EKL A;  1WVO A;  2MSJ A;  1C8A A;  7AME A;  4UR4 A;  3QF6 A;  8AME A;  1GZI A;  3AME A;  1XUU A;  4AME A;  6MSI A;  1AME A;  1B7J A;  3FRN A;  1VLI A;  1HG7 A;  4MSI A;  7MSI A;  4NY6 A;  2JIA A;  2AME A;  2LX3 A;  1B7K A;  9MSI A;  5MSI A;  1JAB A; 
#chains in the Genus database with same CATH topology
 4IPJ A;  1C89 A;  4UR6 A;  1B7I A;  3NLA A;  2LX2 A;  1OPS A;  2WQP A;  2MSI A;  1MSJ A;  1XUZ A;  3G8R A;  2ZDR A;  3MSI A;  3K3S A;  9AME A;  1KDE A;  1MSI A;  3CM4 A;  3RDN A;  2SPG A;  8MSI A;  1KDF A;  1UCS A;  6AME A;  4IPI A;  1EKL A;  1WVO A;  2MSJ A;  1C8A A;  7AME A;  4UR4 A;  3QF6 A;  8AME A;  1GZI A;  3AME A;  1XUU A;  4AME A;  6MSI A;  1AME A;  1B7J A;  3FRN A;  1VLI A;  1HG7 A;  3LAZ A;  4MSI A;  7MSI A;  4NY6 A;  2JIA A;  2AME A;  2LX3 A;  1B7K A;  9MSI A;  5MSI A;  1JAB A; 
#chains in the Genus database with same CATH homology
 4IPJ A;  1C89 A;  4UR6 A;  1B7I A;  3NLA A;  2LX2 A;  1OPS A;  2WQP A;  2MSI A;  1MSJ A;  1XUZ A;  3G8R A;  2ZDR A;  3MSI A;  9AME A;  1KDE A;  1MSI A;  3CM4 A;  3RDN A;  2SPG A;  8MSI A;  1KDF A;  1UCS A;  6AME A;  4IPI A;  1EKL A;  1WVO A;  2MSJ A;  1C8A A;  7AME A;  4UR4 A;  3QF6 A;  8AME A;  1GZI A;  3AME A;  1XUU A;  4AME A;  6MSI A;  1AME A;  1B7J A;  3FRN A;  1VLI A;  1HG7 A;  4MSI A;  7MSI A;  4NY6 A;  2JIA A;  2AME A;  2LX3 A;  1B7K A;  9MSI A;  5MSI A;  1JAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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