2JIFA

Structure of human short-branched chain acyl-coa dehydrogenase (acadsb)
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
381
structure length
381
Chain Sequence
APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SHORT/BRANCHED CHAIN SPECIFIC ACYL-COA DEHYDROGENASE
publication title Crystal Structure of Human Short-Branched Chain Acyl-Coa Dehydrogenase
rcsb
source organism Homo sapiens
total genus 145
structure length 381
sequence length 381
chains with identical sequence B, C, D
ec nomenclature ec 1.3.8.5: 2-methyl-branched-chain-enoyl-CoA reductase.
pdb deposition date 2007-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2jifA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2jifA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2jifA02
3D9FA 3BNFA 4L3YA 4KTOA 2OT4A 3OWMA 3UBRA 3S7WA 2YYKA 3SCEA 4L3XA 3GM6A 1RX0A 5K3IA 3BNJA 2UXWA 4G5EA 1EGEA 2E81A 3MDEA 4HR3A 3MPJA 1SIRA 1FS8A 3FCJA 2JBSA 4O5MA 2YYIA 3D9GA 2OR0A 3HWCA 3II9A 1EGCA 2DVLA 3GNCA 3MDDA 3TTBA 3F29A 4XVXA 2EBAA 1OAHA 4N5FA 1FS9A 2YYMA 2ZO5A 4OO2A 2VIGA 1BUCA 2RF7A 3SF6A 4Q17A 3D9DA 3SWOA 1U8VA 3OIBA 4ZXVA 2E80A 2IX6A 5K3HA 3EONA 4Q5CA 3MPIA 3D9EA 2R0NA 2YYLA 2VR0A 3LGQA 1EGDA 2IX5A 1FS7A 3MMOA 5K3GA 4Q4UA 4U83A 5K3JA 3LG1A 4Q5BA 2C12A 1SIQA 3SXQA 4P13A 2JBRA 4DOYA 3R7KA 3P4TA 2JBTA 3GQTA 4IV6A 3UU9A 3X0YA 3D6BA 4JEKA 1UKWA 2C0UA 4L38A 3NF4A 2A1TA 3FO3A 1GU6A 2RFQA 4ZYJA 3OWAA 4RM7A 2DDHA 4W9UA 3M9VA 3MKHA 3EOMA 3AFEA 1T9GA 2ZAFA 3BNHA 2YYGA 4X28A 2WBIA 2CX9A 2Z1QA 4X28C 4IRNA 3L1TA 3TORA 1QDBA 4L3ZA 2RDZA 4WJYA 1WS9A 1IVHA 4M9AA 4KCFA 2YYJA 3X0XA 1R2JA 1IS2A 2D29A 3AFFA 2FONA 3MXLA 3BNGA 4L1FA 3PFDA 3RKHA 4NXLA 1UDYA 4Q0TA 1JQIA 2REHA 2J7AA 2JIFA 4Q1OA 2R0MA 1W07A 3B96A 2PG0A 3D1IA
chains in the Genus database with same CATH superfamily
3D9FA 3BNFA 2CJ4A 2Q8IA 4L3YA 1GKXA 4KTOA 2EBHX 1PK0A 3TZ0A 2OT4A 4MPCA 3OWMA 4P79A 3UBRA 5GJWE 3S7WA 2F6LA 2YYKA 3CE2A 2CJ8A 3Q24A 1Y8OA 3SCEA 4L3XA 3GM6A 1RX0A 5K3IA 3BNJA 1SC5A 1X90A 2UXWA 4F0XA 4LQQB 4G5EA 2EC5A 2ZDXA 4KSAA 1EGEA 2R02A 5B6BA 2E81A 4AI6A 2BU5A 4JIOA 4MPEA 5EZ3A 2ZKJA 3CRLA 4E02A 3TZ2A 3MDEA 4MP7A 4DZYA 4MP2A 4HR3A 3MPJA 1SIRA 4J1VA 1FS8A 3FCJA 2BU7A 2JBSA 4O5MA 5J71A 2YYIA 5B5WA 3D9GA 2AZEA 2OR0A 3HWCA 3II9A 1EGCA 2DVLA 1K93A 3GNCA 1XFXA 3MDDA 3TTBA 3VKHA 5M4NA 1R3BA 3F29A 3C3LA 1Y8PA 2PNRA 2HJNA 3U33A 1X8ZA 1XFWA 4XVXA 3TZ4A 1K8TA 2EBAA 1OAHA 2XS8A 4N5FA 1FS9A 5BRKA 2YYMA 2ZO5A 2BU8A 1X91A 4KS9A 4OO2A 2VIGA 1BUCA 2RF7A 4AKGA 3SF6A 4Q17A 3D9DA 3SWOA 1U8VA 3OIBA 4ZXVA 2E80A 4V26A 2XQRB 2IX6A 2PO4A 5K3HA 3CRKA 3EONA 4Q5CA 2AO2A 4H7QA 3MPIA 3D9EA 2R0NA 1XFYA 1Y0VA 2YYLA 2VR0A 4FF2A 1SK6A 1K90A 1EGDA 3LGQA 1RJ4A 2CJ7A 2IX5A 1FS7A 3MMOA 5K3GA 2XS1A 4Q4UA 5M4MA 4AKHA 3VKGA 3Q22A 4FZ4A 4U83A 5K3JA 3LG1A 4Q5BA 5M4KA 2C12A 1SIQA 3SXQA 4P13A 4MPNA 4FF4A 1XFZA 2E0AA 2JBRA 2CJ5A 4DOYA 3R7KA 1RJ1A 2OEXA 4KSFA 3P4TA 2Q8HA 2JBTA 3GQTA 4IV6A 3UU9A 2OEVA 3X0YA 2YGWA 4FF3A 4AKIA 3D6BA 4JEKA 5GJVE 2R05A 1UKWA 1LVCA 2BTZA 4HKRA 4QICA 2C0UA 2ZDYA 4JIZA 5BRMA 2FP1A 4L38A 3Q0AA 3NF4A 2A1TA 1XFVA 2BU6A 1GU6A 3FO3A 3C46A 1RP3A 2RFQA 4ZYJA 3OWAA 4RM7A 3KMLA 2DDHA 4W9UA 3M9VA 3MKHA 3EOMA 2FP2A 4FF1A 4E00A 3AFEA 1GKZA 3X29A 1T9GA 2ZAFA 3BNHA 4V25A 3Q23A 2YYGA 4E01A 4HKSA 4X28A 1XFUA 2WBIA 2CX9A 2Z1QA 4X28C 4IRNA 2R03A 3L1TA 3N0RA 4G97A 1QDBA 3TORA 4L3ZA 2RDZA 4WJYA 1PI1A 4H85A 1WS9A 2VF1A 2LFWA 1IVHA 4M9AA 4H81A 1JM6A 4KCFA 1S26A 2BU2A 3X0XA 1R2JA 2YYJA 5B5VA 1IS2A 2D29A 3AFFA 3DJLA 5J6AA 2FONA 3MXLA 5M4PA 1GJVA 3TZ5A 2EBFX 3BNGA 4L1FA 2Q8FA 3PFDA 3C2PA 3RKHA 4NXLA 2Q8GA 1UDYA 4Q0TA 2CJ6A 1JQIA 2REHA 4LQSB 2J7AA 1XG2B 3D2RA 1Y8NA 2JIFA 2GBBA 2QR4A 2R0MA 4Q1OA 1W07A 2OJQA 3B96A 3VADA 2PG0A 3D1IA
chains in the Genus database with same CATH topology
3D9FA 3BNFA 4L3YA 4KTOA 2OT4A 3OWMA 3UBRA 3S7WA 2YYKA 3SCEA 4L3XA 3GM6A 1RX0A 5K3IA 3BNJA 2UXWA 4G5EA 1EGEA 2E81A 3MDEA 4HR3A 3MPJA 1SIRA 1FS8A 3FCJA 2JBSA 4O5MA 2YYIA 3D9GA 2OR0A 3HWCA 3II9A 1EGCA 2DVLA 3GNCA 3MDDA 3TTBA 3F29A 4XVXA 2EBAA 1OAHA 4N5FA 1FS9A 2YYMA 2ZO5A 4OO2A 2VIGA 1BUCA 2RF7A 3SF6A 4Q17A 3D9DA 3SWOA 1U8VA 3OIBA 4ZXVA 2E80A 2IX6A 5K3HA 3EONA 4Q5CA 3MPIA 3D9EA 2R0NA 2YYLA 2VR0A 3LGQA 1EGDA 2IX5A 1FS7A 3MMOA 5K3GA 4Q4UA 4U83A 5K3JA 3LG1A 4Q5BA 2C12A 1SIQA 3SXQA 4P13A 2JBRA 4DOYA 3R7KA 3P4TA 2JBTA 3GQTA 4IV6A 3UU9A 3X0YA 3D6BA 4JEKA 1UKWA 2C0UA 4L38A 3NF4A 2A1TA 3FO3A 1GU6A 2RFQA 4ZYJA 3OWAA 4RM7A 2DDHA 4W9UA 3M9VA 3MKHA 3EOMA 3AFEA 1T9GA 2ZAFA 3BNHA 2YYGA 4X28A 2WBIA 2CX9A 2Z1QA 4X28C 4IRNA 3L1TA 3TORA 1QDBA 4L3ZA 2RDZA 4WJYA 1WS9A 1IVHA 4M9AA 4KCFA 2YYJA 3X0XA 1R2JA 1IS2A 2D29A 3AFFA 2FONA 3MXLA 3BNGA 4L1FA 3PFDA 3RKHA 4NXLA 1UDYA 4Q0TA 1JQIA 2REHA 2J7AA 2JIFA 4Q1OA 2R0MA 1W07A 3B96A 2PG0A 3D1IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D9F A;  3BNF A;  4L3Y A;  4KTO A;  2OT4 A;  3OWM A;  3UBR A;  3S7W A;  2YYK A;  3SCE A;  4L3X A;  3GM6 A;  1RX0 A;  5K3I A;  3BNJ A;  2UXW A;  4G5E A;  1EGE A;  2E81 A;  3MDE A;  4HR3 A;  3MPJ A;  1SIR A;  1FS8 A;  3FCJ A;  2JBS A;  4O5M A;  2YYI A;  3D9G A;  2OR0 A;  3HWC A;  3II9 A;  1EGC A;  2DVL A;  3GNC A;  3MDD A;  3TTB A;  3F29 A;  4XVX A;  2EBA A;  1OAH A;  4N5F A;  1FS9 A;  2YYM A;  2ZO5 A;  4OO2 A;  2VIG A;  1BUC A;  2RF7 A;  3SF6 A;  4Q17 A;  3D9D A;  3SWO A;  1U8V A;  3OIB A;  4ZXV A;  2E80 A;  2IX6 A;  5K3H A;  3EON A;  4Q5C A;  3MPI A;  3D9E A;  2R0N A;  2YYL A;  2VR0 A;  3LGQ A;  1EGD A;  2IX5 A;  1FS7 A;  3MMO A;  5K3G A;  4Q4U A;  4U83 A;  5K3J A;  3LG1 A;  4Q5B A;  2C12 A;  1SIQ A;  3SXQ A;  4P13 A;  2JBR A;  4DOY A;  3R7K A;  3P4T A;  2JBT A;  3GQT A;  4IV6 A;  3UU9 A;  3X0Y A;  3D6B A;  4JEK A;  1UKW A;  2C0U A;  4L38 A;  3NF4 A;  2A1T A;  3FO3 A;  1GU6 A;  2RFQ A;  4ZYJ A;  3OWA A;  4RM7 A;  2DDH A;  4W9U A;  3M9V A;  3MKH A;  3EOM A;  3AFE A;  1T9G A;  2ZAF A;  3BNH A;  2YYG A;  4X28 A;  2WBI A;  2CX9 A;  2Z1Q A;  4X28 C;  4IRN A;  3L1T A;  3TOR A;  1QDB A;  4L3Z A;  2RDZ A;  4WJY A;  1WS9 A;  1IVH A;  4M9A A;  4KCF A;  2YYJ A;  3X0X A;  1R2J A;  1IS2 A;  2D29 A;  3AFF A;  2FON A;  3MXL A;  3BNG A;  4L1F A;  3PFD A;  3RKH A;  4NXL A;  1UDY A;  4Q0T A;  1JQI A;  2REH A;  2J7A A;  2JIF A;  4Q1O A;  2R0M A;  1W07 A;  3B96 A;  2PG0 A;  3D1I A; 
#chains in the Genus database with same CATH topology
 3D9F A;  3BNF A;  2CJ4 A;  2Q8I A;  4L3Y A;  1GKX A;  4KTO A;  2EBH X;  1PK0 A;  3TZ0 A;  2OT4 A;  4MPC A;  3OWM A;  4P79 A;  3UBR A;  5GJW E;  3S7W A;  2F6L A;  2YYK A;  3CE2 A;  2CJ8 A;  3Q24 A;  1Y8O A;  3SCE A;  4L3X A;  3GM6 A;  1RX0 A;  5K3I A;  3BNJ A;  1SC5 A;  1X90 A;  2UXW A;  4F0X A;  4LQQ B;  4G5E A;  2EC5 A;  2ZDX A;  4KSA A;  1EGE A;  2R02 A;  5B6B A;  2E81 A;  4AI6 A;  2BU5 A;  4JIO A;  4MPE A;  5EZ3 A;  2ZKJ A;  3CRL A;  4E02 A;  3TZ2 A;  3MDE A;  4MP7 A;  4DZY A;  4MP2 A;  4HR3 A;  3MPJ A;  1SIR A;  4J1V A;  1FS8 A;  3FCJ A;  2BU7 A;  2JBS A;  4O5M A;  5J71 A;  2YYI A;  5B5W A;  3D9G A;  2AZE A;  2OR0 A;  3HWC A;  3II9 A;  1EGC A;  2DVL A;  1K93 A;  3GNC A;  1XFX A;  3MDD A;  3TTB A;  3VKH A;  5M4N A;  1R3B A;  3F29 A;  3C3L A;  1Y8P A;  2PNR A;  2HJN A;  3U33 A;  1X8Z A;  1XFW A;  4XVX A;  3TZ4 A;  1K8T A;  2EBA A;  1OAH A;  2XS8 A;  4N5F A;  1FS9 A;  5BRK A;  2YYM A;  2ZO5 A;  2BU8 A;  1X91 A;  4KS9 A;  4OO2 A;  2VIG A;  1BUC A;  2RF7 A;  4AKG A;  3SF6 A;  4Q17 A;  3D9D A;  3SWO A;  1U8V A;  3OIB A;  4ZXV A;  2E80 A;  4V26 A;  2XQR B;  2IX6 A;  2PO4 A;  5K3H A;  3CRK A;  3EON A;  4Q5C A;  2AO2 A;  4H7Q A;  3MPI A;  3D9E A;  2R0N A;  1XFY A;  1Y0V A;  2YYL A;  2VR0 A;  4FF2 A;  1SK6 A;  1K90 A;  1EGD A;  3LGQ A;  1RJ4 A;  2CJ7 A;  2IX5 A;  1FS7 A;  3MMO A;  5K3G A;  2XS1 A;  4Q4U A;  5M4M A;  4AKH A;  3VKG A;  3Q22 A;  4FZ4 A;  4U83 A;  5K3J A;  3LG1 A;  4Q5B A;  5M4K A;  2C12 A;  1SIQ A;  3SXQ A;  4P13 A;  4MPN A;  4FF4 A;  1XFZ A;  2E0A A;  2JBR A;  2CJ5 A;  4DOY A;  3R7K A;  1RJ1 A;  2OEX A;  4KSF A;  3P4T A;  2Q8H A;  2JBT A;  3GQT A;  4IV6 A;  3UU9 A;  2OEV A;  3X0Y A;  2YGW A;  4FF3 A;  4AKI A;  3D6B A;  4JEK A;  5GJV E;  2R05 A;  1UKW A;  1LVC A;  2BTZ A;  4HKR A;  4QIC A;  2C0U A;  2ZDY A;  4JIZ A;  5BRM A;  2FP1 A;  4L38 A;  3Q0A A;  3NF4 A;  2A1T A;  1XFV A;  2BU6 A;  1GU6 A;  3FO3 A;  3C46 A;  1RP3 A;  2RFQ A;  4ZYJ A;  3OWA A;  4RM7 A;  3KML A;  2DDH A;  4W9U A;  3M9V A;  3MKH A;  3EOM A;  2FP2 A;  4FF1 A;  4E00 A;  3AFE A;  1GKZ A;  3X29 A;  1T9G A;  2ZAF A;  3BNH A;  4V25 A;  3Q23 A;  2YYG A;  4E01 A;  4HKS A;  4X28 A;  1XFU A;  2WBI A;  2CX9 A;  2Z1Q A;  4X28 C;  4IRN A;  2R03 A;  3L1T A;  3N0R A;  4G97 A;  1QDB A;  3TOR A;  4L3Z A;  2RDZ A;  4WJY A;  1PI1 A;  4H85 A;  1WS9 A;  2VF1 A;  2LFW A;  1IVH A;  4M9A A;  4H81 A;  1JM6 A;  4KCF A;  1S26 A;  2BU2 A;  3X0X A;  1R2J A;  2YYJ A;  5B5V A;  1IS2 A;  2D29 A;  3AFF A;  3DJL A;  5J6A A;  2FON A;  3MXL A;  5M4P A;  1GJV A;  3TZ5 A;  2EBF X;  3BNG A;  4L1F A;  2Q8F A;  3PFD A;  3C2P A;  3RKH A;  4NXL A;  2Q8G A;  1UDY A;  4Q0T A;  2CJ6 A;  1JQI A;  2REH A;  4LQS B;  2J7A A;  1XG2 B;  3D2R A;  1Y8N A;  2JIF A;  2GBB A;  2QR4 A;  2R0M A;  4Q1O A;  1W07 A;  2OJQ A;  3B96 A;  3VAD A;  2PG0 A;  3D1I A; 
#chains in the Genus database with same CATH homology
 3D9F A;  3BNF A;  4L3Y A;  4KTO A;  2OT4 A;  3OWM A;  3UBR A;  3S7W A;  2YYK A;  3SCE A;  4L3X A;  3GM6 A;  1RX0 A;  5K3I A;  3BNJ A;  2UXW A;  4G5E A;  1EGE A;  2E81 A;  3MDE A;  4HR3 A;  3MPJ A;  1SIR A;  1FS8 A;  3FCJ A;  2JBS A;  4O5M A;  2YYI A;  3D9G A;  2OR0 A;  3HWC A;  3II9 A;  1EGC A;  2DVL A;  3GNC A;  3MDD A;  3TTB A;  3F29 A;  4XVX A;  2EBA A;  1OAH A;  4N5F A;  1FS9 A;  2YYM A;  2ZO5 A;  4OO2 A;  2VIG A;  1BUC A;  2RF7 A;  3SF6 A;  4Q17 A;  3D9D A;  3SWO A;  1U8V A;  3OIB A;  4ZXV A;  2E80 A;  2IX6 A;  5K3H A;  3EON A;  4Q5C A;  3MPI A;  3D9E A;  2R0N A;  2YYL A;  2VR0 A;  3LGQ A;  1EGD A;  2IX5 A;  1FS7 A;  3MMO A;  5K3G A;  4Q4U A;  4U83 A;  5K3J A;  3LG1 A;  4Q5B A;  2C12 A;  1SIQ A;  3SXQ A;  4P13 A;  2JBR A;  4DOY A;  3R7K A;  3P4T A;  2JBT A;  3GQT A;  4IV6 A;  3UU9 A;  3X0Y A;  3D6B A;  4JEK A;  1UKW A;  2C0U A;  4L38 A;  3NF4 A;  2A1T A;  3FO3 A;  1GU6 A;  2RFQ A;  4ZYJ A;  3OWA A;  4RM7 A;  2DDH A;  4W9U A;  3M9V A;  3MKH A;  3EOM A;  3AFE A;  1T9G A;  2ZAF A;  3BNH A;  2YYG A;  4X28 A;  2WBI A;  2CX9 A;  2Z1Q A;  4X28 C;  4IRN A;  3L1T A;  3TOR A;  1QDB A;  4L3Z A;  2RDZ A;  4WJY A;  1WS9 A;  1IVH A;  4M9A A;  4KCF A;  2YYJ A;  3X0X A;  1R2J A;  1IS2 A;  2D29 A;  3AFF A;  2FON A;  3MXL A;  3BNG A;  4L1F A;  3PFD A;  3RKH A;  4NXL A;  1UDY A;  4Q0T A;  1JQI A;  2REH A;  2J7A A;  2JIF A;  4Q1O A;  2R0M A;  1W07 A;  3B96 A;  2PG0 A;  3D1I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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