2JMMA

Nmr solution structure of a minimal transmembrane beta-barrel platform protein
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
156
structure length
156
Chain Sequence
MPKDNTWYTGAKLGWSQYSRENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYRFGQGEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Escherichia coli
publication title A minimal transmembrane beta-barrel platform protein studied by nuclear magnetic resonance
pubmed doi rcsb
molecule keywords Outer membrane protein A
total genus 34
structure length 156
sequence length 156
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01389 OmpA_membrane OmpA-like transmembrane domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 2jmmA00
4RLCA 1QJPA 2N2MA 3QRAA 1THQA 2JMMA 3G7GA 2LHFA 1ORMA 2F1VA 4PUXA 2MHLA 1P4TA 2X27X 2K0LA 1MM5A 3GP6A 2N2LA 3C5OA 2M07A 1QJ8A 3QRCA 2MNHA 1G90A 2GE4A 1MM4A 1Q9FA 1Q9GA 1QJ9A 2F1TA 2ERVA 2M06A 1BXWA
chains in the Genus database with same CATH superfamily
2KZ7A 3K19A 3EMNX 4RL9A 3SYBA 3AAEA 4N59A 4GF4A 5ADXK 4RLCA 1QJPA 2N2MA 3HOEA 3HW9A 3KZIO 4FT6A 3SZDA 4AYNA 4N74A 4O3WA 4KR8A 4AYID 4E1SA 4F4BA 2LFUA 4PR7A 5PRNA 1ORMA 4CTDA 4GCPA 3UAQA 1HXXA 2O4VA 1IZNB 4LSFA 4C00A 5FVNA 1MM5A 2FGRA 3BRZA 4C4VB 2J1NA 2XTRA 2N2LA 3PORA 3LK3B 4G76A 3AAAB 4Z3TA 4FMSA 3A0HO 4FRTA 5B66O 5GTIO 2W80C 4FUVA 3VY8X 2XE1A 3AA7A 3AA1B 3T0SA 5GTHO 2X9KA 5G38A 5IYUA 2GE4A 2Y0KA 4XNLA 2Y7SA 3LK2A 2KZ7B 4FZMA 4O49A 4FRXA 3AAEB 4O3XB 6PRNA 4UB8O 1T16A 5G39A 3POQA 3DA4A 2QTKA 4UB6O 2FGQX 1GFNA 3SY9A 3WI4A 3DWOX 5AFUL 4RJXA 4N58A 2Y0HA 1H6S1 3DA3A 3SYSA 5D5DA 8PRNA 3T20A 3JCUO 1PRNA 2XMXA 4FQEA 1OSMA 3JTYA 4K3BA 3KVDD 4AFKA 5H2FO 3VZUX 1YS5A 1GFOA 4D64A 2AXTO 1ZHXA 2F1VA 3AA7B 2MHLA 1P4TA 2W81C 3POXA 5G3AA 7PRNA 3AA6B 4FESA 4E1TA 3GP6A 3LK2B 3DZMA 4D5UA 3BRYA 1G90A 3A0BO 1HXUA 4JFBA 3UU2A 2YNKA 3BS0A 5DL7A 3V8UA 3AA6A 3VY9X 1MM4A 2XE3A 4FSPA 3UPGA 3O0EA 1Q9FA 2XTQA 3NJTA 1ZHWA 2R4NA 1BXWA 5KAFO 3VZTX 3VE1A 2R89A 1Q9GA 2IWVA 3FYXA 4RJWA 2ODJA 3PGRA 4O4UA 2OMFA 5KAIO 2WVPA 1E54A 3LK42 4O4XA 5GV0A 5G26A 1HXTA 2R88A 4FZLA 3PQSA 1PHOA 1THQA 3QRAA 5DL5A 5AFUK 1T1LA 3VE2A 4G75A 5T5FA 2LHFA 3T24A 4GCSA 3WI5A 3NSGA 5DL8A 4PUXA 3POUA 4KR4A 2XE5A 3HWBA 4AKRA 2Y0LA 2F1CX 2M07A 3SZVA 4GHBA 2MNHA 4XNKA 2R4LA 4O3ZA 4BUMX 4N75A 5DL6A 4C69X 2Y2XA 1GFPA 1GFMA 2R8AA 2IWWA 4AZLA 1MPFA 3WU2O 1BH3A 4O3YA 1QJ9A 2F1TA 5ADXL 2ERVA 4RLBA 2M06A 2PORA 3PQUA 2R4OA 4PJ0O 3RBHA 2YPVA 1ZHZA 1BT9A 2R4PA 3PGSA 3DWNA 4GCQA 5TISO 4FZNA 3TZGA 5B5EO 2JMMA 2KXPB 2ZFGA 4AKRB 3G7GA 1GFQA 4U9CA 5E79O 3HOLA 1ZHTA 5EE2A 4AUIA 4LSEA 1OPFA 2X27X 2WJRA 2K0LA 3PGUA 4LSIA 4QQ1A 4D65A 4KRAA 2K4TA 2KXPA 3C5OA 3SY7A 3AA0B 4AKMA 1QJ8A 3QRCA 4AYMC 2PRNA 1S5LO 4K3CA 5JDPA 1IZNA 2XE2A 4B61A 4AYDC 4C4VA 2J4UP 4LSHA 4JCHA 2WJQA 3LK3A 2ZLDA 3AAAA 2KDYA 3A2SX 3PF1A 4FOZA 3AA0A 3VZWX 2JQYA 3AA1A 3PRNA 4FSOA 3LK41 2KC0A 4IL6O 1ZHYA 4AYEC 2XG6A
chains in the Genus database with same CATH topology
2KZ7A 3K19A 3EMNX 4RL9A 3SYBA 3AAEA 4N59A 4GF4A 5ADXK 4RLCA 1QJPA 2N2MA 3HOEA 3HW9A 4AYNA 4FT6A 3SZDA 4O3WA 4KR8A 4AYID 4E1SA 4F4BA 2LFUA 5PRNA 1ORMA 4GCPA 3UAQA 1HXXA 2O4VA 1IZNB 4LSFA 5FVNA 1MM5A 2FGRA 2J1NA 2XTRA 2N2LA 3PORA 3LK3B 4G76A 3AAAB 4Z3TA 4FMSA 4FRTA 2W80C 4FUVA 3VY8X 2XE1A 3AA7A 3AA1B 3T0SA 5IYUA 2GE4A 2Y0KA 4XNLA 2Y7SA 3LK2A 2KZ7B 4FZMA 4O49A 4FRXA 3AAEB 4O3XB 6PRNA 3POQA 3DA4A 2QTKA 3SY9A 2FGQX 1GFNA 3WI4A 5AFUL 4RJXA 4N58A 2Y0HA 1H6S1 3DA3A 3SYSA 5D5DA 8PRNA 3T20A 2XMXA 1PRNA 1OSMA 3JTYA 3KVDD 4AFKA 3VZUX 1YS5A 1GFOA 4D64A 1ZHXA 2F1VA 3AA7B 2MHLA 1P4TA 2W81C 3POXA 7PRNA 3AA6B 4FESA 4E1TA 3GP6A 3LK2B 4D5UA 1G90A 1HXUA 4JFBA 3UU2A 2YNKA 5DL7A 3V8UA 3AA6A 3VY9X 1MM4A 2XE3A 4FSPA 3UPGA 3O0EA 1Q9FA 2XTQA 1ZHWA 1BXWA 3VZTX 3VE1A 1Q9GA 3FYXA 4RJWA 2ODJA 4O4UA 2OMFA 1E54A 3LK42 4O4XA 5GV0A 5G26A 1HXTA 4FZLA 5DL5A 3PQSA 1PHOA 1THQA 3QRAA 5AFUK 3VE2A 4G75A 5T5FA 2LHFA 3T24A 4GCSA 3WI5A 3NSGA 5DL8A 4PUXA 3POUA 4KR4A 2XE5A 3HWBA 4AKRA 2Y0LA 2M07A 3SZVA 4GHBA 2MNHA 4XNKA 4O3ZA 4BUMX 4C69X 5DL6A 2Y2XA 1GFPA 1GFMA 4AZLA 1MPFA 1BH3A 4O3YA 1QJ9A 2F1TA 5ADXL 2ERVA 4RLBA 2M06A 2PORA 3PQUA 3RBHA 2YPVA 1ZHZA 1BT9A 3TZGA 4GCQA 4FZNA 2JMMA 2KXPB 2ZFGA 4AKRB 3G7GA 1GFQA 4U9CA 3HOLA 1ZHTA 5EE2A 4AUIA 4LSEA 1OPFA 2X27X 4D65A 2K0LA 4LSIA 4QQ1A 4KRAA 2K4TA 2KXPA 3C5OA 3SY7A 3AA0B 4AKMA 1QJ8A 3QRCA 4AYMC 2PRNA 5JDPA 1IZNA 2XE2A 4B61A 4AYDC 2J4UP 4LSHA 4JCHA 3LK3A 2ZLDA 3AAAA 2KDYA 3A2SX 4FOZA 3AA0A 3VZWX 3AA1A 3PRNA 4FSOA 3LK41 2KC0A 1ZHYA 4AYEC 2XG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RLC A;  1QJP A;  2N2M A;  3QRA A;  1THQ A;  2JMM A;  3G7G A;  2LHF A;  1ORM A;  2F1V A;  4PUX A;  2MHL A;  1P4T A;  2X27 X;  2K0L A;  1MM5 A;  3GP6 A;  2N2L A;  3C5O A;  2M07 A;  1QJ8 A;  3QRC A;  2MNH A;  1G90 A;  2GE4 A;  1MM4 A;  1Q9F A;  1Q9G A;  1QJ9 A;  2F1T A;  2ERV A;  2M06 A;  1BXW A; 
#chains in the Genus database with same CATH topology
 2KZ7 A;  3K19 A;  3EMN X;  4RL9 A;  3SYB A;  3AAE A;  4N59 A;  4GF4 A;  5ADX K;  4RLC A;  1QJP A;  2N2M A;  3HOE A;  3HW9 A;  3KZI O;  4FT6 A;  3SZD A;  4AYN A;  4N74 A;  4O3W A;  4KR8 A;  4AYI D;  4E1S A;  4F4B A;  2LFU A;  4PR7 A;  5PRN A;  1ORM A;  4CTD A;  4GCP A;  3UAQ A;  1HXX A;  2O4V A;  1IZN B;  4LSF A;  4C00 A;  5FVN A;  1MM5 A;  2FGR A;  3BRZ A;  4C4V B;  2J1N A;  2XTR A;  2N2L A;  3POR A;  3LK3 B;  4G76 A;  3AAA B;  4Z3T A;  4FMS A;  3A0H O;  4FRT A;  5B66 O;  5GTI O;  2W80 C;  4FUV A;  3VY8 X;  2XE1 A;  3AA7 A;  3AA1 B;  3T0S A;  5GTH O;  2X9K A;  5G38 A;  5IYU A;  2GE4 A;  2Y0K A;  4XNL A;  2Y7S A;  3LK2 A;  2KZ7 B;  4FZM A;  4O49 A;  4FRX A;  3AAE B;  4O3X B;  6PRN A;  4UB8 O;  1T16 A;  5G39 A;  3POQ A;  3DA4 A;  2QTK A;  4UB6 O;  2FGQ X;  1GFN A;  3SY9 A;  3WI4 A;  3DWO X;  5AFU L;  4RJX A;  4N58 A;  2Y0H A;  1H6S 1;  3DA3 A;  3SYS A;  5D5D A;  8PRN A;  3T20 A;  3JCU O;  1PRN A;  2XMX A;  4FQE A;  1OSM A;  3JTY A;  4K3B A;  3KVD D;  4AFK A;  5H2F O;  3VZU X;  1YS5 A;  1GFO A;  4D64 A;  2AXT O;  1ZHX A;  2F1V A;  3AA7 B;  2MHL A;  1P4T A;  2W81 C;  3POX A;  5G3A A;  7PRN A;  3AA6 B;  4FES A;  4E1T A;  3GP6 A;  3LK2 B;  3DZM A;  4D5U A;  3BRY A;  1G90 A;  3A0B O;  1HXU A;  4JFB A;  3UU2 A;  2YNK A;  3BS0 A;  5DL7 A;  3V8U A;  3AA6 A;  3VY9 X;  1MM4 A;  2XE3 A;  4FSP A;  3UPG A;  3O0E A;  1Q9F A;  2XTQ A;  3NJT A;  1ZHW A;  2R4N A;  1BXW A;  5KAF O;  3VZT X;  3VE1 A;  2R89 A;  1Q9G A;  2IWV A;  3FYX A;  4RJW A;  2ODJ A;  3PGR A;  4O4U A;  2OMF A;  5KAI O;  2WVP A;  1E54 A;  3LK4 2;  4O4X A;  5GV0 A;  5G26 A;  1HXT A;  2R88 A;  4FZL A;  3PQS A;  1PHO A;  1THQ A;  3QRA A;  5DL5 A;  5AFU K;  1T1L A;  3VE2 A;  4G75 A;  5T5F A;  2LHF A;  3T24 A;  4GCS A;  3WI5 A;  3NSG A;  5DL8 A;  4PUX A;  3POU A;  4KR4 A;  2XE5 A;  3HWB A;  4AKR A;  2Y0L A;  2F1C X;  2M07 A;  3SZV A;  4GHB A;  2MNH A;  4XNK A;  2R4L A;  4O3Z A;  4BUM X;  4N75 A;  5DL6 A;  4C69 X;  2Y2X A;  1GFP A;  1GFM A;  2R8A A;  2IWW A;  4AZL A;  1MPF A;  3WU2 O;  1BH3 A;  4O3Y A;  1QJ9 A;  2F1T A;  5ADX L;  2ERV A;  4RLB A;  2M06 A;  2POR A;  3PQU A;  2R4O A;  4PJ0 O;  3RBH A;  2YPV A;  1ZHZ A;  1BT9 A;  2R4P A;  3PGS A;  3DWN A;  4GCQ A;  5TIS O;  4FZN A;  3TZG A;  5B5E O;  2JMM A;  2KXP B;  2ZFG A;  4AKR B;  3G7G A;  1GFQ A;  4U9C A;  5E79 O;  3HOL A;  1ZHT A;  5EE2 A;  4AUI A;  4LSE A;  1OPF A;  2X27 X;  2WJR A;  2K0L A;  3PGU A;  4LSI A;  4QQ1 A;  4D65 A;  4KRA A;  2K4T A;  2KXP A;  3C5O A;  3SY7 A;  3AA0 B;  4AKM A;  1QJ8 A;  3QRC A;  4AYM C;  2PRN A;  1S5L O;  4K3C A;  5JDP A;  1IZN A;  2XE2 A;  4B61 A;  4AYD C;  4C4V A;  2J4U P;  4LSH A;  4JCH A;  2WJQ A;  3LK3 A;  2ZLD A;  3AAA A;  2KDY A;  3A2S X;  3PF1 A;  4FOZ A;  3AA0 A;  3VZW X;  2JQY A;  3AA1 A;  3PRN A;  4FSO A;  3LK4 1;  2KC0 A;  4IL6 O;  1ZHY A;  4AYE C;  2XG6 A; 
#chains in the Genus database with same CATH homology
 2KZ7 A;  3K19 A;  3EMN X;  4RL9 A;  3SYB A;  3AAE A;  4N59 A;  4GF4 A;  5ADX K;  4RLC A;  1QJP A;  2N2M A;  3HOE A;  3HW9 A;  4AYN A;  4FT6 A;  3SZD A;  4O3W A;  4KR8 A;  4AYI D;  4E1S A;  4F4B A;  2LFU A;  5PRN A;  1ORM A;  4GCP A;  3UAQ A;  1HXX A;  2O4V A;  1IZN B;  4LSF A;  5FVN A;  1MM5 A;  2FGR A;  2J1N A;  2XTR A;  2N2L A;  3POR A;  3LK3 B;  4G76 A;  3AAA B;  4Z3T A;  4FMS A;  4FRT A;  2W80 C;  4FUV A;  3VY8 X;  2XE1 A;  3AA7 A;  3AA1 B;  3T0S A;  5IYU A;  2GE4 A;  2Y0K A;  4XNL A;  2Y7S A;  3LK2 A;  2KZ7 B;  4FZM A;  4O49 A;  4FRX A;  3AAE B;  4O3X B;  6PRN A;  3POQ A;  3DA4 A;  2QTK A;  3SY9 A;  2FGQ X;  1GFN A;  3WI4 A;  5AFU L;  4RJX A;  4N58 A;  2Y0H A;  1H6S 1;  3DA3 A;  3SYS A;  5D5D A;  8PRN A;  3T20 A;  2XMX A;  1PRN A;  1OSM A;  3JTY A;  3KVD D;  4AFK A;  3VZU X;  1YS5 A;  1GFO A;  4D64 A;  1ZHX A;  2F1V A;  3AA7 B;  2MHL A;  1P4T A;  2W81 C;  3POX A;  7PRN A;  3AA6 B;  4FES A;  4E1T A;  3GP6 A;  3LK2 B;  4D5U A;  1G90 A;  1HXU A;  4JFB A;  3UU2 A;  2YNK A;  5DL7 A;  3V8U A;  3AA6 A;  3VY9 X;  1MM4 A;  2XE3 A;  4FSP A;  3UPG A;  3O0E A;  1Q9F A;  2XTQ A;  1ZHW A;  1BXW A;  3VZT X;  3VE1 A;  1Q9G A;  3FYX A;  4RJW A;  2ODJ A;  4O4U A;  2OMF A;  1E54 A;  3LK4 2;  4O4X A;  5GV0 A;  5G26 A;  1HXT A;  4FZL A;  5DL5 A;  3PQS A;  1PHO A;  1THQ A;  3QRA A;  5AFU K;  3VE2 A;  4G75 A;  5T5F A;  2LHF A;  3T24 A;  4GCS A;  3WI5 A;  3NSG A;  5DL8 A;  4PUX A;  3POU A;  4KR4 A;  2XE5 A;  3HWB A;  4AKR A;  2Y0L A;  2M07 A;  3SZV A;  4GHB A;  2MNH A;  4XNK A;  4O3Z A;  4BUM X;  4C69 X;  5DL6 A;  2Y2X A;  1GFP A;  1GFM A;  4AZL A;  1MPF A;  1BH3 A;  4O3Y A;  1QJ9 A;  2F1T A;  5ADX L;  2ERV A;  4RLB A;  2M06 A;  2POR A;  3PQU A;  3RBH A;  2YPV A;  1ZHZ A;  1BT9 A;  3TZG A;  4GCQ A;  4FZN A;  2JMM A;  2KXP B;  2ZFG A;  4AKR B;  3G7G A;  1GFQ A;  4U9C A;  3HOL A;  1ZHT A;  5EE2 A;  4AUI A;  4LSE A;  1OPF A;  2X27 X;  4D65 A;  2K0L A;  4LSI A;  4QQ1 A;  4KRA A;  2K4T A;  2KXP A;  3C5O A;  3SY7 A;  3AA0 B;  4AKM A;  1QJ8 A;  3QRC A;  4AYM C;  2PRN A;  5JDP A;  1IZN A;  2XE2 A;  4B61 A;  4AYD C;  2J4U P;  4LSH A;  4JCH A;  3LK3 A;  2ZLD A;  3AAA A;  2KDY A;  3A2S X;  4FOZ A;  3AA0 A;  3VZW X;  3AA1 A;  3PRN A;  4FSO A;  3LK4 1;  2KC0 A;  1ZHY A;  4AYE C;  2XG6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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