2JN8A

Solution nmr structure of q8zrj2 from salmonella typhimurium. northeast structural genomics target str65.
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
109
structure length
109
Chain Sequence
VNFKDKSMPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELVLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative cytoplasmic protein
publication title Solution NMR structure of Q8ZRJ2 from Salmonella typhimurium. Northeast Structural Genomics target StR65.
rcsb
source organism Salmonella typhimurium
total genus 34
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2006-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08986 DUF1889 Domain of unknown function (DUF1889)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.30 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2jn8A00
2JN8A 2ES9A
chains in the Genus database with same CATH superfamily
2KZ7A 4AKRA 2QEUA 3D7IA 3AA7A 3LVYA 2OUWA 2ES9A 5DIPA 3C1LA 2AF7A 2O4DA 3AA6A 3AA0A 1IZNA 3AA1A 5ADXK 2CWQA 5AFUK 2KXPA 5DIKA 1ME5A 1LW1A 3BEYA 1VKEA 1GU9A 1P8CA 3AAEA 4G9QA 2OYOA 3LK41 2PFXA 2IJCA 2JN8A 3LK3A 2Q0TA 3AAAA 1KNCA 2GMYA 2PRRA 3LK2A
chains in the Genus database with same CATH topology
2KZ7A 4AKRA 2QEUA 3D7IA 3AA7A 3LVYA 2OUWA 2ES9A 5DIPA 3C1LA 2AF7A 2O4DA 3AA6A 3AA0A 1IZNA 3AA1A 5ADXK 2CWQA 5AFUK 2KXPA 5DIKA 1ME5A 1LW1A 3BEYA 1VKEA 1GU9A 1P8CA 3AAEA 4G9QA 2OYOA 3LK41 2PFXA 2IJCA 2JN8A 3LK3A 2Q0TA 3AAAA 1KNCA 2GMYA 2PRRA 3LK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JN8 A;  2ES9 A; 
#chains in the Genus database with same CATH topology
 2KZ7 A;  4AKR A;  2QEU A;  3D7I A;  3AA7 A;  3LVY A;  2OUW A;  2ES9 A;  5DIP A;  3C1L A;  2AF7 A;  2O4D A;  3AA6 A;  3AA0 A;  1IZN A;  3AA1 A;  5ADX K;  2CWQ A;  5AFU K;  2KXP A;  5DIK A;  1ME5 A;  1LW1 A;  3BEY A;  1VKE A;  1GU9 A;  1P8C A;  3AAE A;  4G9Q A;  2OYO A;  3LK4 1;  2PFX A;  2IJC A;  2JN8 A;  3LK3 A;  2Q0T A;  3AAA A;  1KNC A;  2GMY A;  2PRR A;  3LK2 A; 
#chains in the Genus database with same CATH homology
 2KZ7 A;  4AKR A;  2QEU A;  3D7I A;  3AA7 A;  3LVY A;  2OUW A;  2ES9 A;  5DIP A;  3C1L A;  2AF7 A;  2O4D A;  3AA6 A;  3AA0 A;  1IZN A;  3AA1 A;  5ADX K;  2CWQ A;  5AFU K;  2KXP A;  5DIK A;  1ME5 A;  1LW1 A;  3BEY A;  1VKE A;  1GU9 A;  1P8C A;  3AAE A;  4G9Q A;  2OYO A;  3LK4 1;  2PFX A;  2IJC A;  2JN8 A;  3LK3 A;  2Q0T A;  3AAA A;  1KNC A;  2GMY A;  2PRR A;  3LK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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