2JNAA

Solution nmr structure of salmonella typhimurium lt2 secreted protein stm0082: northeast structural genomics consortium target str109
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATKLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative secreted protein
publication title Solution NMR Structure of Salmonella typhimurium LT2 Secreted Protein STM0082: Northeast Structural Genomics Consortium Target StR109
rcsb
source organism Salmonella typhimurium
total genus 18
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07338 DUF1471 Protein of unknown function (DUF1471)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 2jnaA01
2M2JA 4B2KA 2CC8A 2VKGA 3ONRA 2VKFA 4B2MA 2JNAA 2CC7A 2V21A 2YIZA 2CZ8A 2DEGA 2CCCA 2NOCA 2MA4A 2DEVA 2CIEA 1MOGA 4B2HA 2VYXA 2VXAA 2CIFA 4EVUA 2YJ0A 2CC6A 4B2JA 2CC9A 3OQTA 2VX9A 2DEHA 2CCBA 2MA8A 2CJCA 2V19A 2V18A 2UX9A
chains in the Genus database with same CATH superfamily
2M2JA 4B2KA 2CC8A 2VKGA 3ONRA 2VKFA 4B2MA 2JNAA 2CC7A 2JZ7A 2V21A 2YIZA 2CZ8A 2DEGA 2CCCA 2NOCA 2DEVA 2MA4A 2CIEA 1RGXA 1MOGA 4B2HA 2VYXA 2VXAA 2CIFA 1RFXA 4EVUA 1RH7A 2YJ0A 2CC6A 4B2JA 2CC9A 3OQTA 2VX9A 2DEHA 2CCBA 2MA8A 2CJCA 2V19A 3W1EA 2V18A 2UX9A
chains in the Genus database with same CATH topology
2M2JA 4B2KA 2CC8A 2VKGA 3ONRA 2VKFA 4B2MA 2JNAA 2CC7A 2V21A 2YIZA 2CZ8A 2DEGA 2CCCA 2NOCA 2MA4A 2DEVA 2CIEA 1MOGA 4B2HA 2VYXA 2VXAA 2CIFA 4EVUA 2YJ0A 2CC6A 4B2JA 2CC9A 3OQTA 2VX9A 2DEHA 2CCBA 2MA8A 2CJCA 2V19A 2V18A 2UX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M2J A;  4B2K A;  2CC8 A;  2VKG A;  3ONR A;  2VKF A;  4B2M A;  2JNA A;  2CC7 A;  2V21 A;  2YIZ A;  2CZ8 A;  2DEG A;  2CCC A;  2NOC A;  2MA4 A;  2DEV A;  2CIE A;  1MOG A;  4B2H A;  2VYX A;  2VXA A;  2CIF A;  4EVU A;  2YJ0 A;  2CC6 A;  4B2J A;  2CC9 A;  3OQT A;  2VX9 A;  2DEH A;  2CCB A;  2MA8 A;  2CJC A;  2V19 A;  2V18 A;  2UX9 A; 
#chains in the Genus database with same CATH topology
 2M2J A;  4B2K A;  2CC8 A;  2VKG A;  3ONR A;  2VKF A;  4B2M A;  2JNA A;  2CC7 A;  2JZ7 A;  2V21 A;  2YIZ A;  2CZ8 A;  2DEG A;  2CCC A;  2NOC A;  2DEV A;  2MA4 A;  2CIE A;  1RGX A;  1MOG A;  4B2H A;  2VYX A;  2VXA A;  2CIF A;  1RFX A;  4EVU A;  1RH7 A;  2YJ0 A;  2CC6 A;  4B2J A;  2CC9 A;  3OQT A;  2VX9 A;  2DEH A;  2CCB A;  2MA8 A;  2CJC A;  2V19 A;  3W1E A;  2V18 A;  2UX9 A; 
#chains in the Genus database with same CATH homology
 2M2J A;  4B2K A;  2CC8 A;  2VKG A;  3ONR A;  2VKF A;  4B2M A;  2JNA A;  2CC7 A;  2V21 A;  2YIZ A;  2CZ8 A;  2DEG A;  2CCC A;  2NOC A;  2MA4 A;  2DEV A;  2CIE A;  1MOG A;  4B2H A;  2VYX A;  2VXA A;  2CIF A;  4EVU A;  2YJ0 A;  2CC6 A;  4B2J A;  2CC9 A;  3OQT A;  2VX9 A;  2DEH A;  2CCB A;  2MA8 A;  2CJC A;  2V19 A;  2V18 A;  2UX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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