2JNCA

Refined 3d nmr structure of ecd1 of mcrf-r2beta at ph 5
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
78
structure length
78
Chain Sequence
YCHRTTIGNFSGPYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASRVNYSHCEPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligand binding protein
molecule keywords Corticotropin-releasing factor receptor 2
publication title Structure of the N-terminal domain of a type B1 G protein-coupled receptor in complex with a peptide ligand
pubmed doi rcsb
source organism Mus musculus
total genus 6
structure length 78
sequence length 78
ec nomenclature
pdb deposition date 2007-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02793 HRM Hormone receptor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.1240.10 Few Secondary Structures Irregular Hormone receptor fold GPCR, family 2, extracellular hormone receptor domain 2jncA00
3L2JA 3N7PA 3EHSA 3IOLA 1U34A 3C5TA 2XDGA 4DLOA 3AQFB 2JODA 3EHUA 2QKHA 4ZGMA 4ERSA 3N7SA 3C4MA 3C59A 2JNDA 2L27A 3EHTA 3H3GA 4HJ0A 3N7RA 2JNCA 4LF3C 4DLQA 5II0A
chains in the Genus database with same CATH superfamily
3L2JA 3N7PA 3EHSA 3IOLA 1U34A 3C5TA 2XDGA 4DLOA 3AQFB 2JODA 3EHUA 2QKHA 4ZGMA 4ERSA 3N7SA 3C4MA 3C59A 2JNDA 2L27A 3EHTA 3H3GA 4HJ0A 3N7RA 2JNCA 4LF3C 4DLQA 5II0A
chains in the Genus database with same CATH topology
3L2JA 3N7PA 3EHSA 3IOLA 1U34A 3C5TA 2XDGA 4DLOA 3AQFB 2JODA 3EHUA 2QKHA 4ZGMA 4ERSA 3N7SA 3C4MA 3C59A 2JNDA 2L27A 3EHTA 3H3GA 4HJ0A 3N7RA 2JNCA 4LF3C 4DLQA 5II0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L2J A;  3N7P A;  3EHS A;  3IOL A;  1U34 A;  3C5T A;  2XDG A;  4DLO A;  3AQF B;  2JOD A;  3EHU A;  2QKH A;  4ZGM A;  4ERS A;  3N7S A;  3C4M A;  3C59 A;  2JND A;  2L27 A;  3EHT A;  3H3G A;  4HJ0 A;  3N7R A;  2JNC A;  4LF3 C;  4DLQ A;  5II0 A; 
#chains in the Genus database with same CATH topology
 3L2J A;  3N7P A;  3EHS A;  3IOL A;  1U34 A;  3C5T A;  2XDG A;  4DLO A;  3AQF B;  2JOD A;  3EHU A;  2QKH A;  4ZGM A;  4ERS A;  3N7S A;  3C4M A;  3C59 A;  2JND A;  2L27 A;  3EHT A;  3H3G A;  4HJ0 A;  3N7R A;  2JNC A;  4LF3 C;  4DLQ A;  5II0 A; 
#chains in the Genus database with same CATH homology
 3L2J A;  3N7P A;  3EHS A;  3IOL A;  1U34 A;  3C5T A;  2XDG A;  4DLO A;  3AQF B;  2JOD A;  3EHU A;  2QKH A;  4ZGM A;  4ERS A;  3N7S A;  3C4M A;  3C59 A;  2JND A;  2L27 A;  3EHT A;  3H3G A;  4HJ0 A;  3N7R A;  2JNC A;  4LF3 C;  4DLQ A;  5II0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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