2JNDA

3d nmr structure of ecd1 of mcrf-r2b in complex with astressin
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
79
structure length
79
Chain Sequence
YCHRTTIGNFSGPYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASRVNYSHCEPIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligand binding protein
molecule keywords Corticotropin-releasing factor receptor 2
publication title Structure of the N-terminal domain of a type B1 G protein-coupled receptor in complex with a peptide ligand
pubmed doi rcsb
source organism Mus musculus
total genus 4
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2007-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02793 HRM Hormone receptor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.1240.10 Few Secondary Structures Irregular Hormone receptor fold GPCR, family 2, extracellular hormone receptor domain 2jndA00
2JNCA 3N7PA 2JNDA 3L2JA 3IOLA 4ZGMA 3C4MA 2JODA 4HJ0A 3C5TA 1U34A 3AQFB 4DLOA 2L27A 3N7RA 2QKHA 3EHTA 5II0A 3C59A 3EHSA 3N7SA 4DLQA 4LF3C 3EHUA 2XDGA 3H3GA 4ERSA
chains in the Genus database with same CATH superfamily
2JNCA 3N7PA 2JNDA 3L2JA 3IOLA 4ZGMA 3C4MA 2JODA 4HJ0A 3C5TA 1U34A 3AQFB 4DLOA 2L27A 3N7RA 2QKHA 3EHTA 5II0A 3C59A 3EHSA 3N7SA 4DLQA 4LF3C 3EHUA 2XDGA 3H3GA 4ERSA
chains in the Genus database with same CATH topology
2JNCA 3N7PA 2JNDA 3L2JA 3IOLA 4ZGMA 3C4MA 2JODA 4HJ0A 3C5TA 1U34A 3AQFB 4DLOA 2L27A 3N7RA 2QKHA 3EHTA 5II0A 3C59A 3EHSA 3N7SA 4DLQA 4LF3C 3EHUA 2XDGA 3H3GA 4ERSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JNC A;  3N7P A;  2JND A;  3L2J A;  3IOL A;  4ZGM A;  3C4M A;  2JOD A;  4HJ0 A;  3C5T A;  1U34 A;  3AQF B;  4DLO A;  2L27 A;  3N7R A;  2QKH A;  3EHT A;  5II0 A;  3C59 A;  3EHS A;  3N7S A;  4DLQ A;  4LF3 C;  3EHU A;  2XDG A;  3H3G A;  4ERS A; 
#chains in the Genus database with same CATH topology
 2JNC A;  3N7P A;  2JND A;  3L2J A;  3IOL A;  4ZGM A;  3C4M A;  2JOD A;  4HJ0 A;  3C5T A;  1U34 A;  3AQF B;  4DLO A;  2L27 A;  3N7R A;  2QKH A;  3EHT A;  5II0 A;  3C59 A;  3EHS A;  3N7S A;  4DLQ A;  4LF3 C;  3EHU A;  2XDG A;  3H3G A;  4ERS A; 
#chains in the Genus database with same CATH homology
 2JNC A;  3N7P A;  2JND A;  3L2J A;  3IOL A;  4ZGM A;  3C4M A;  2JOD A;  4HJ0 A;  3C5T A;  1U34 A;  3AQF B;  4DLO A;  2L27 A;  3N7R A;  2QKH A;  3EHT A;  5II0 A;  3C59 A;  3EHS A;  3N7S A;  4DLQ A;  4LF3 C;  3EHU A;  2XDG A;  3H3G A;  4ERS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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