2JNQA

Solution structure of a klba intein precursor from methanococcus jannaschii
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
186
structure length
186
Chain Sequence
MNTGHDGALAYDEPIYLSDGNIINIGEFVDKFFKKYKNSIKKEDNGFGWIDIGNENIYIKSFNKLSLIIEDKRILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVEDNHTYIAGKNEGFAVSASSGTLHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Hypothetical protein MJ0781
publication title NMR structure of a KlbA intein precursor from Methanococcus jannaschii
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 31
structure length 186
sequence length 186
ec nomenclature
pdb deposition date 2007-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2jnqA01
1GPPA 2IN9A 1EF0A 2IMZA 4KL6A 1DFAA 3IFJA 5I0AA 2CW7A 4E2TA 4O1SA 1ZD7A 1AT0A 2CW8A 2LWYA 4O1RA 2L8LA 3IGDA 4OZ6A 1MI8A 1ZDEA 1UM2A 1VDEA 1DQ3A 2IN8A 2LCJA 2IN0A 4GIGA 1JVAA 3NZMA 1LWTA 2LQMA 1AM2A 4E2UA 5K08A 2JMZA 4KL5A 2KEQA 2JNQA 1LWSA
chains in the Genus database with same CATH superfamily
1GPPA 2IN9A 1EF0A 2IMZA 4KL6A 1DFAA 3IFJA 5I0AA 2CW7A 4E2TA 4O1SA 1ZD7A 1AT0A 2CW8A 2LWYA 4O1RA 2L8LA 3IGDA 4OZ6A 1MI8A 1ZDEA 1UM2A 1VDEA 1DQ3A 2IN8A 2LCJA 2IN0A 4GIGA 1JVAA 3NZMA 1LWTA 2LQMA 1AM2A 4E2UA 4LX3A 5K08A 2JMZA 4KL5A 2KEQA 4QFQA 2JNQA 1LWSA
chains in the Genus database with same CATH topology
1GPPA 2IN9A 1EF0A 2IMZA 4KL6A 1DFAA 3IFJA 5I0AA 2CW7A 4E2TA 4O1SA 1ZD7A 1AT0A 2CW8A 2LWYA 4O1RA 2L8LA 3IGDA 4OZ6A 1MI8A 1ZDEA 1UM2A 1VDEA 1DQ3A 2IN8A 2LCJA 2IN0A 4GIGA 1JVAA 3NZMA 1LWTA 2LQMA 1AM2A 4E2UA 5K08A 2JMZA 4KL5A 2KEQA 2JNQA 1LWSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPP A;  2IN9 A;  1EF0 A;  2IMZ A;  4KL6 A;  1DFA A;  3IFJ A;  5I0A A;  2CW7 A;  4E2T A;  4O1S A;  1ZD7 A;  1AT0 A;  2CW8 A;  2LWY A;  4O1R A;  2L8L A;  3IGD A;  4OZ6 A;  1MI8 A;  1ZDE A;  1UM2 A;  1VDE A;  1DQ3 A;  2IN8 A;  2LCJ A;  2IN0 A;  4GIG A;  1JVA A;  3NZM A;  1LWT A;  2LQM A;  1AM2 A;  4E2U A;  5K08 A;  2JMZ A;  4KL5 A;  2KEQ A;  2JNQ A;  1LWS A; 
#chains in the Genus database with same CATH topology
 1GPP A;  2IN9 A;  1EF0 A;  2IMZ A;  4KL6 A;  1DFA A;  3IFJ A;  5I0A A;  2CW7 A;  4E2T A;  4O1S A;  1ZD7 A;  1AT0 A;  2CW8 A;  2LWY A;  4O1R A;  2L8L A;  3IGD A;  4OZ6 A;  1MI8 A;  1ZDE A;  1UM2 A;  1VDE A;  1DQ3 A;  2IN8 A;  2LCJ A;  2IN0 A;  4GIG A;  1JVA A;  3NZM A;  1LWT A;  2LQM A;  1AM2 A;  4E2U A;  4LX3 A;  5K08 A;  2JMZ A;  4KL5 A;  2KEQ A;  4QFQ A;  2JNQ A;  1LWS A; 
#chains in the Genus database with same CATH homology
 1GPP A;  2IN9 A;  1EF0 A;  2IMZ A;  4KL6 A;  1DFA A;  3IFJ A;  5I0A A;  2CW7 A;  4E2T A;  4O1S A;  1ZD7 A;  1AT0 A;  2CW8 A;  2LWY A;  4O1R A;  2L8L A;  3IGD A;  4OZ6 A;  1MI8 A;  1ZDE A;  1UM2 A;  1VDE A;  1DQ3 A;  2IN8 A;  2LCJ A;  2IN0 A;  4GIG A;  1JVA A;  3NZM A;  1LWT A;  2LQM A;  1AM2 A;  4E2U A;  5K08 A;  2JMZ A;  4KL5 A;  2KEQ A;  2JNQ A;  1LWS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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