2JOIA

Nmr solution structure of hypothetical protein ta0095 from thermoplasma acidophilum
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
96
structure length
96
Chain Sequence
MREYPVKKGFPTDYDSIKRKISELGFDVKSEGDLIIASIPGISRIEIKPDKRKILVNTGDYDSDADKLAVVRTYNDFIEKLTGYSAKERKKMMTKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Thermoplasma acidophilum
publication title Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two-layer sandwich architecture
pubmed doi rcsb
molecule keywords Hypothetical protein Ta0095
total genus 20
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2007-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18446 DUF5611 Domain of unknown function (DUF5611)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.190 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 2joiA00
2JOIA
chains in the Genus database with same CATH superfamily
3D4VA 2D0BA 2DKCA 1AISA 1M3HA 2MZ8A 3HS8A 3OC3C 4I8OA 4WZSD 1LWYA 4EALA 3CWAA 3IH7A 2NOFA 1RM1A 2VJ0A 3I0XA 1TGHA 2JPIA 1KY7A 3DPTA 2OOYA 3VN5A 1PZDA 2MJ7A 4Q11A 3DPUA 3ULXA 1LWVA 1KYUA 4EJYA 5HSHA 4EAGA 1KO9A 4B0AA 2NLVA 1FN7A 1VOKA 5F9CA 4RODB 2I5WA 1NGMA 1KY6A 1YQKA 3CWSA 2QRDA 1J3MA 4ROEB 1EBMA 1PCJX 2HL9A 3OSMA 1LWWA 3KTUA 3TE5A 1MPGA 2QR1A 1TBAB 1QNAA 5BMPA 4EAIA 3OGDA 3F0ZA 1YQMA 1QNBA 2HZMA 2V8QA 2HL8A 3N89A 4ROCB 1VTLE 2V92A 3RPJA 2LAEA 1P5GX 2V9JA 1JFIC 1D3UA 1NVPA 2D0CA 5IYCP 2NOLA 1KFIA 2NOIA 1TBPA 1QNCA 1VOLB 4EJZA 3OSEA 1VKLA 2QREA 3UW2A 1B9KA 1C4GA 2QLVA 2Y8LA 2NOHA 3CW7A 1QN5A 5IYBP 3ENCA 2NVMA 2XHIA 1YTFA 3OCIA 5EPCA 1K2YX 2DKAA 4C7PA 1YQRA 4D7RA 1QNEA 1QTPA 4PY5A 1V5SA 2HZSA 2QRCA 2H5AX 3PDKA 3D7QA 2JOIA 1TUOA 3CVTA 3OH6A 3TDHA 2JHJA 3PMGA 5JN5A 2EHBD 2YA3A 4MRQA 1PVSA 1K35A 4D7QA 1UT7A 4QG5A 1WQAA 1PCMX 1UT4A 1WJWA 1T6AA 2D0AA 4TPSA 3ENOC 2FKFA 1MP9A 4BJUA 1CDWA 1QTSA 2OOXA 3RSMA 4IL8A 3OLPA 3F10A 1QN7A 5AN4A 3H1ZA 1P5DX 2F7LA 4HJHA 1YQLA 4EAKA 5BMNA 2PWWA 2NOZA 1W80A 2G30A 1YTBA 1KYFA 4WXAA 3CVSA 1PCZA 5IYDP 3EIKA 3T4NA 1M5Q1 3CWUA 1VTOA 2Z8UA 4WX8A 3C04A 1HU0A 1DIZA 1QN4A 3NA5A 1EUVA 1KFQA 2R5XA 3OSTA 2IV8A 1N3AA 1QN6A 3KRMA 2ZFDB 1E42A 3EAYA 1UL7A 1XSZA 1C9BB 1C47A 1JDYA 4DULA 3CWTA 2H4LX 4EAJA 2Y8QA 1QN3A 2DKDA 2FKMX 1LXTA 1R4XA 2JHNA 1KYDA 2IV9A 2YH5A 1N3CA 1Q9UA 3I0WA 3OH9A 1N39A 1NH2A 2NOBA 2FUVA 2NOEA 2O3OA 1M3QA 3HS9A 1QN9A 2HKPA 5KL0A 3I3WA 2NWVA 5JMVD 3BKQX 3ASMA 1QN8A 3SNSA 2FGTA 4CFFA 2Z0FA
chains in the Genus database with same CATH topology
2D0BA 1AISA 1M3HA 4WZSD 2MZ8A 3HS8A 3OC3C 4I8OA 1LWYA 3IH7A 2NOFA 1RM1A 2VJ0A 3I0XA 1TGHA 1KY7A 3DPTA 3VN5A 1PZDA 2MJ7A 4Q11A 3DPUA 3ULXA 1LWVA 1KYUA 4EJYA 1KO9A 4B0AA 1FN7A 1VOKA 4RODB 2I5WA 1NGMA 1KY6A 1YQKA 4ROEB 1EBMA 3OSMA 1LWWA 3KTUA 1TBAB 1QNAA 1QNBA 3F0ZA 1YQMA 2HZMA 3N89A 4ROCB 1VTLE 3RPJA 2LAEA 1JFIC 1D3UA 1NVPA 2D0CA 5IYCP 2NOLA 2NOIA 1TBPA 1QNCA 1VOLB 4EJZA 1B9KA 2NOHA 1QN5A 5IYBP 2XHIA 1YTFA 3OCIA 1YQRA 1QNEA 4PY5A 1QTPA 2HZSA 2JOIA 1UT7A 1UT4A 4TPSA 2D0AA 1MP9A 1CDWA 1QTSA 3F10A 1QN7A 5AN4A 3H1ZA 1YQLA 2NOZA 1W80A 2G30A 1YTBA 1KYFA 1PCZA 5IYDP 3EIKA 1HU0A 1VTOA 2Z8UA 1QN4A 1N3AA 1QN6A 3OSTA 2IV8A 3KRMA 1E42A 1C9BB 4DULA 1QN3A 1R4XA 1KYDA 2IV9A 2YH5A 1N3CA 3I0WA 1N39A 1NH2A 2NOBA 2NOEA 2O3OA 1M3QA 3HS9A 1QN9A 3ASMA 1QN8A 3SNSA 2FGTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JOI A; 
#chains in the Genus database with same CATH topology
 3D4V A;  2D0B A;  2DKC A;  1AIS A;  1M3H A;  2MZ8 A;  3HS8 A;  3OC3 C;  4I8O A;  4WZS D;  1LWY A;  4EAL A;  3CWA A;  3IH7 A;  2NOF A;  1RM1 A;  2VJ0 A;  3I0X A;  1TGH A;  2JPI A;  1KY7 A;  3DPT A;  2OOY A;  3VN5 A;  1PZD A;  2MJ7 A;  4Q11 A;  3DPU A;  3ULX A;  1LWV A;  1KYU A;  4EJY A;  5HSH A;  4EAG A;  1KO9 A;  4B0A A;  2NLV A;  1FN7 A;  1VOK A;  5F9C A;  4ROD B;  2I5W A;  1NGM A;  1KY6 A;  1YQK A;  3CWS A;  2QRD A;  1J3M A;  4ROE B;  1EBM A;  1PCJ X;  2HL9 A;  3OSM A;  1LWW A;  3KTU A;  3TE5 A;  1MPG A;  2QR1 A;  1TBA B;  1QNA A;  5BMP A;  4EAI A;  3OGD A;  3F0Z A;  1YQM A;  1QNB A;  2HZM A;  2V8Q A;  2HL8 A;  3N89 A;  4ROC B;  1VTL E;  2V92 A;  3RPJ A;  2LAE A;  1P5G X;  2V9J A;  1JFI C;  1D3U A;  1NVP A;  2D0C A;  5IYC P;  2NOL A;  1KFI A;  2NOI A;  1TBP A;  1QNC A;  1VOL B;  4EJZ A;  3OSE A;  1VKL A;  2QRE A;  3UW2 A;  1B9K A;  1C4G A;  2QLV A;  2Y8L A;  2NOH A;  3CW7 A;  1QN5 A;  5IYB P;  3ENC A;  2NVM A;  2XHI A;  1YTF A;  3OCI A;  5EPC A;  1K2Y X;  2DKA A;  4C7P A;  1YQR A;  4D7R A;  1QNE A;  1QTP A;  4PY5 A;  1V5S A;  2HZS A;  2QRC A;  2H5A X;  3PDK A;  3D7Q A;  2JOI A;  1TUO A;  3CVT A;  3OH6 A;  3TDH A;  2JHJ A;  3PMG A;  5JN5 A;  2EHB D;  2YA3 A;  4MRQ A;  1PVS A;  1K35 A;  4D7Q A;  1UT7 A;  4QG5 A;  1WQA A;  1PCM X;  1UT4 A;  1WJW A;  1T6A A;  2D0A A;  4TPS A;  3ENO C;  2FKF A;  1MP9 A;  4BJU A;  1CDW A;  1QTS A;  2OOX A;  3RSM A;  4IL8 A;  3OLP A;  3F10 A;  1QN7 A;  5AN4 A;  3H1Z A;  1P5D X;  2F7L A;  4HJH A;  1YQL A;  4EAK A;  5BMN A;  2PWW A;  2NOZ A;  1W80 A;  2G30 A;  1YTB A;  1KYF A;  4WXA A;  3CVS A;  1PCZ A;  5IYD P;  3EIK A;  3T4N A;  1M5Q 1;  3CWU A;  1VTO A;  2Z8U A;  4WX8 A;  3C04 A;  1HU0 A;  1DIZ A;  1QN4 A;  3NA5 A;  1EUV A;  1KFQ A;  2R5X A;  3OST A;  2IV8 A;  1N3A A;  1QN6 A;  3KRM A;  2ZFD B;  1E42 A;  3EAY A;  1UL7 A;  1XSZ A;  1C9B B;  1C47 A;  1JDY A;  4DUL A;  3CWT A;  2H4L X;  4EAJ A;  2Y8Q A;  1QN3 A;  2DKD A;  2FKM X;  1LXT A;  1R4X A;  2JHN A;  1KYD A;  2IV9 A;  2YH5 A;  1N3C A;  1Q9U A;  3I0W A;  3OH9 A;  1N39 A;  1NH2 A;  2NOB A;  2FUV A;  2NOE A;  2O3O A;  1M3Q A;  3HS9 A;  1QN9 A;  2HKP A;  5KL0 A;  3I3W A;  2NWV A;  5JMV D;  3BKQ X;  3ASM A;  1QN8 A;  3SNS A;  2FGT A;  4CFF A;  2Z0F A; 
#chains in the Genus database with same CATH homology
 2D0B A;  1AIS A;  1M3H A;  4WZS D;  2MZ8 A;  3HS8 A;  3OC3 C;  4I8O A;  1LWY A;  3IH7 A;  2NOF A;  1RM1 A;  2VJ0 A;  3I0X A;  1TGH A;  1KY7 A;  3DPT A;  3VN5 A;  1PZD A;  2MJ7 A;  4Q11 A;  3DPU A;  3ULX A;  1LWV A;  1KYU A;  4EJY A;  1KO9 A;  4B0A A;  1FN7 A;  1VOK A;  4ROD B;  2I5W A;  1NGM A;  1KY6 A;  1YQK A;  4ROE B;  1EBM A;  3OSM A;  1LWW A;  3KTU A;  1TBA B;  1QNA A;  1QNB A;  3F0Z A;  1YQM A;  2HZM A;  3N89 A;  4ROC B;  1VTL E;  3RPJ A;  2LAE A;  1JFI C;  1D3U A;  1NVP A;  2D0C A;  5IYC P;  2NOL A;  2NOI A;  1TBP A;  1QNC A;  1VOL B;  4EJZ A;  1B9K A;  2NOH A;  1QN5 A;  5IYB P;  2XHI A;  1YTF A;  3OCI A;  1YQR A;  1QNE A;  4PY5 A;  1QTP A;  2HZS A;  2JOI A;  1UT7 A;  1UT4 A;  4TPS A;  2D0A A;  1MP9 A;  1CDW A;  1QTS A;  3F10 A;  1QN7 A;  5AN4 A;  3H1Z A;  1YQL A;  2NOZ A;  1W80 A;  2G30 A;  1YTB A;  1KYF A;  1PCZ A;  5IYD P;  3EIK A;  1HU0 A;  1VTO A;  2Z8U A;  1QN4 A;  1N3A A;  1QN6 A;  3OST A;  2IV8 A;  3KRM A;  1E42 A;  1C9B B;  4DUL A;  1QN3 A;  1R4X A;  1KYD A;  2IV9 A;  2YH5 A;  1N3C A;  3I0W A;  1N39 A;  1NH2 A;  2NOB A;  2NOE A;  2O3O A;  1M3Q A;  3HS9 A;  1QN9 A;  3ASM A;  1QN8 A;  3SNS A;  2FGT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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