2JPIA

Chemical shift assignments of pa4090 from pseudomonas aeruginosa
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
96
structure length
96
Chain Sequence
MFRSTSHVRTESAARYVNRLCKHWGHKFEVELTPERGFIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRMANSESLEIAWQPAES
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Hypothetical protein
publication title chemical shift assignments of PA4090 from Pseudomonas aeruginosa
rcsb
source organism Pseudomonas aeruginosa
molecule tags Structural genomics
total genus 21
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2007-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09981 DUF2218 Uncharacterized protein conserved in bacteria (DUF2218)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2jpiA00
2FKMX 1VKLA 3ENCA 5JMVD 4WX8A 3OLPA 1WQAA 3PDKA 5BMPA 2Z0FA 1LXTA 5JN5A 1PCJX 3NA5A 4IL8A 1C47A 2H5AX 4BJUA 2DKCA 1P5DX 3RSMA 1TUOA 2FKFA 4WXAA 5F9CA 2DKAA 5BMNA 1C4GA 2F7LA 4MRQA 5EPCA 3PMGA 5KL0A 1P5GX 1K35A 2JPIA 2H4LX 2FUVA 3ENOC 5HSHA 1JDYA 1PCMX 1KFQA 1KFIA 3C04A 4QG5A 2DKDA 3BKQX 3I3WA 3UW2A 1WJWA 1K2YX 4HJHA
chains in the Genus database with same CATH superfamily
2FKMX 1QNCA 1QN8A 3DPUA 1UT7A 5AN4A 2NWVA 3H1ZA 3OLPA 1N39A 1QTPA 1MPGA 5IYDP 4C7PA 2VJ0A 1TBAB 2MJ7A 1TBPA 1V5SA 1QN9A 1M3QA 2V92A 3NA5A 2QRDA 3SNSA 4BJUA 1C9BB 3I0XA 1PVSA 2DKCA 2PWWA 2MZ8A 3CVTA 4EAGA 2F7LA 2HL9A 4MRQA 1Q9UA 3PMGA 3N89A 1B9KA 4D7RA 4EJZA 1QNBA 2ZFDB 2HZSA 2JPIA 3OC3C 2NOLA 3ENOC 3IH7A 3ULXA 1JDYA 1PCMX 1NH2A 3OH9A 1VOKA 1MP9A 5IYBP 1QN7A 2V8QA 2NLVA 3CWTA 2FGTA 2JOIA 4ROEB 1YTBA 4DULA 5JMVD 1QN3A 2NOIA 1R4XA 3PDKA 1YQMA 1QN5A 5BMPA 3CWAA 2Z0FA 5IYCP 1C47A 2H5AX 1P5DX 2R5XA 2HKPA 1KYUA 5F9CA 2QREA 1RM1A 5BMNA 3EAYA 1QN6A 4CFFA 2JHJA 3KRMA 2HZMA 1XSZA 4PY5A 2D0AA 1QN4A 3HS8A 1N3CA 1M3HA 2Y8LA 1HU0A 5HSHA 1D3UA 1KYDA 1KFIA 3OGDA 1EBMA 1T6AA 3OCIA 4I8OA 4QG5A 2DKDA 3OH6A 3I3WA 2EHBD 1VKLA 1E42A 2O3OA 4TPSA 1CDWA 3ASMA 1KYFA 3KTUA 4RODB 3D7QA 1LWVA 1EUVA 4EAJA 2XHIA 1YQLA 1KY6A 1VOLB 3DPTA 3CW7A 4B0AA 1JFIC 3TDHA 5JN5A 2NOHA 2JHNA 1AISA 3RSMA 4WXAA 1NVPA 3F10A 2DKAA 2QRCA 2LAEA 1N3AA 3F0ZA 1KO9A 2NVMA 1UL7A 5KL0A 1PZDA 1P5GX 1K35A 3T4NA 3CVSA 2V9JA 1M5Q1 2H4LX 2IV9A 3VN5A 1YQRA 2Y8QA 1KFQA 2QLVA 4Q11A 3C04A 3EIKA 3OSMA 1TGHA 3BKQX 3OSEA 2IV8A 2OOXA 4HJHA 1YTFA 3ENCA 4EAIA 2HL8A 1QNAA 4WX8A 1QNEA 2Z8UA 1WQAA 1KY7A 2OOYA 2YH5A 2NOEA 1LXTA 1PCJX 3OSTA 4IL8A 1VTOA 2NOFA 2D0CA 2I5WA 1TUOA 2FKFA 1VTLE 2G30A 3D4VA 4EALA 1C4GA 1LWWA 5EPCA 1NGMA 4D7QA 3HS9A 1LWYA 1FN7A 1UT4A 3CWSA 4EJYA 2FUVA 1YQKA 1J3MA 2QR1A 4WZSD 4ROCB 1PCZA 3TE5A 1QTSA 1DIZA 1W80A 2NOBA 3UW2A 2YA3A 2D0BA 3RPJA 3I0WA 3CWUA 2NOZA 1WJWA 4EAKA 1K2YX
chains in the Genus database with same CATH topology
2FKMX 1VKLA 3ENCA 5JMVD 4WX8A 3OLPA 1WQAA 3PDKA 5BMPA 2Z0FA 1LXTA 5JN5A 1PCJX 3NA5A 4IL8A 1C47A 2H5AX 4BJUA 2DKCA 1P5DX 3RSMA 1TUOA 2FKFA 4WXAA 5F9CA 2DKAA 5BMNA 1C4GA 2F7LA 4MRQA 5EPCA 3PMGA 5KL0A 1P5GX 1K35A 2JPIA 2H4LX 2FUVA 3ENOC 5HSHA 1JDYA 1PCMX 1KFQA 1KFIA 3C04A 4QG5A 2DKDA 3BKQX 3I3WA 3UW2A 1WJWA 1K2YX 4HJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FKM X;  1VKL A;  3ENC A;  5JMV D;  4WX8 A;  3OLP A;  1WQA A;  3PDK A;  5BMP A;  2Z0F A;  1LXT A;  5JN5 A;  1PCJ X;  3NA5 A;  4IL8 A;  1C47 A;  2H5A X;  4BJU A;  2DKC A;  1P5D X;  3RSM A;  1TUO A;  2FKF A;  4WXA A;  5F9C A;  2DKA A;  5BMN A;  1C4G A;  2F7L A;  4MRQ A;  5EPC A;  3PMG A;  5KL0 A;  1P5G X;  1K35 A;  2JPI A;  2H4L X;  2FUV A;  3ENO C;  5HSH A;  1JDY A;  1PCM X;  1KFQ A;  1KFI A;  3C04 A;  4QG5 A;  2DKD A;  3BKQ X;  3I3W A;  3UW2 A;  1WJW A;  1K2Y X;  4HJH A; 
#chains in the Genus database with same CATH topology
 2FKM X;  1QNC A;  1QN8 A;  3DPU A;  1UT7 A;  5AN4 A;  2NWV A;  3H1Z A;  3OLP A;  1N39 A;  1QTP A;  1MPG A;  5IYD P;  4C7P A;  2VJ0 A;  1TBA B;  2MJ7 A;  1TBP A;  1V5S A;  1QN9 A;  1M3Q A;  2V92 A;  3NA5 A;  2QRD A;  3SNS A;  4BJU A;  1C9B B;  3I0X A;  1PVS A;  2DKC A;  2PWW A;  2MZ8 A;  3CVT A;  4EAG A;  2F7L A;  2HL9 A;  4MRQ A;  1Q9U A;  3PMG A;  3N89 A;  1B9K A;  4D7R A;  4EJZ A;  1QNB A;  2ZFD B;  2HZS A;  2JPI A;  3OC3 C;  2NOL A;  3ENO C;  3IH7 A;  3ULX A;  1JDY A;  1PCM X;  1NH2 A;  3OH9 A;  1VOK A;  1MP9 A;  5IYB P;  1QN7 A;  2V8Q A;  2NLV A;  3CWT A;  2FGT A;  2JOI A;  4ROE B;  1YTB A;  4DUL A;  5JMV D;  1QN3 A;  2NOI A;  1R4X A;  3PDK A;  1YQM A;  1QN5 A;  5BMP A;  3CWA A;  2Z0F A;  5IYC P;  1C47 A;  2H5A X;  1P5D X;  2R5X A;  2HKP A;  1KYU A;  5F9C A;  2QRE A;  1RM1 A;  5BMN A;  3EAY A;  1QN6 A;  4CFF A;  2JHJ A;  3KRM A;  2HZM A;  1XSZ A;  4PY5 A;  2D0A A;  1QN4 A;  3HS8 A;  1N3C A;  1M3H A;  2Y8L A;  1HU0 A;  5HSH A;  1D3U A;  1KYD A;  1KFI A;  3OGD A;  1EBM A;  1T6A A;  3OCI A;  4I8O A;  4QG5 A;  2DKD A;  3OH6 A;  3I3W A;  2EHB D;  1VKL A;  1E42 A;  2O3O A;  4TPS A;  1CDW A;  3ASM A;  1KYF A;  3KTU A;  4ROD B;  3D7Q A;  1LWV A;  1EUV A;  4EAJ A;  2XHI A;  1YQL A;  1KY6 A;  1VOL B;  3DPT A;  3CW7 A;  4B0A A;  1JFI C;  3TDH A;  5JN5 A;  2NOH A;  2JHN A;  1AIS A;  3RSM A;  4WXA A;  1NVP A;  3F10 A;  2DKA A;  2QRC A;  2LAE A;  1N3A A;  3F0Z A;  1KO9 A;  2NVM A;  1UL7 A;  5KL0 A;  1PZD A;  1P5G X;  1K35 A;  3T4N A;  3CVS A;  2V9J A;  1M5Q 1;  2H4L X;  2IV9 A;  3VN5 A;  1YQR A;  2Y8Q A;  1KFQ A;  2QLV A;  4Q11 A;  3C04 A;  3EIK A;  3OSM A;  1TGH A;  3BKQ X;  3OSE A;  2IV8 A;  2OOX A;  4HJH A;  1YTF A;  3ENC A;  4EAI A;  2HL8 A;  1QNA A;  4WX8 A;  1QNE A;  2Z8U A;  1WQA A;  1KY7 A;  2OOY A;  2YH5 A;  2NOE A;  1LXT A;  1PCJ X;  3OST A;  4IL8 A;  1VTO A;  2NOF A;  2D0C A;  2I5W A;  1TUO A;  2FKF A;  1VTL E;  2G30 A;  3D4V A;  4EAL A;  1C4G A;  1LWW A;  5EPC A;  1NGM A;  4D7Q A;  3HS9 A;  1LWY A;  1FN7 A;  1UT4 A;  3CWS A;  4EJY A;  2FUV A;  1YQK A;  1J3M A;  2QR1 A;  4WZS D;  4ROC B;  1PCZ A;  3TE5 A;  1QTS A;  1DIZ A;  1W80 A;  2NOB A;  3UW2 A;  2YA3 A;  2D0B A;  3RPJ A;  3I0W A;  3CWU A;  2NOZ A;  1WJW A;  4EAK A;  1K2Y X; 
#chains in the Genus database with same CATH homology
 2FKM X;  1VKL A;  3ENC A;  5JMV D;  4WX8 A;  3OLP A;  1WQA A;  3PDK A;  5BMP A;  2Z0F A;  1LXT A;  5JN5 A;  1PCJ X;  3NA5 A;  4IL8 A;  1C47 A;  2H5A X;  4BJU A;  2DKC A;  1P5D X;  3RSM A;  1TUO A;  2FKF A;  4WXA A;  5F9C A;  2DKA A;  5BMN A;  1C4G A;  2F7L A;  4MRQ A;  5EPC A;  3PMG A;  5KL0 A;  1P5G X;  1K35 A;  2JPI A;  2H4L X;  2FUV A;  3ENO C;  5HSH A;  1JDY A;  1PCM X;  1KFQ A;  1KFI A;  3C04 A;  4QG5 A;  2DKD A;  3BKQ X;  3I3W A;  3UW2 A;  1WJW A;  1K2Y X;  4HJH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...