2JPNA

Solution structure of t4 bacteriophage helicase uvsw.1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
79
structure length
79
Chain Sequence
GSHMLLEFKQFLYEASIDEFMGKIASCQTLEGLEELEAYYKKRVKETELKDTDDISVRDALAGKRAELEDSDDEVEESF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ATP-dependent DNA helicase uvsW
publication title Crystallographic and NMR Analyses of UvsW and UvsW.1 from Bacteriophage T4
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 25
structure length 79
sequence length 79
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 2007-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11637 UvsW ATP-dependant DNA helicase UvsW
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.210 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 2jpnA00
2JPNA
chains in the Genus database with same CATH superfamily
1MTYG 5IZ7A 1IH7A 2OVRB 5H37A 3SI6A 3RMAA 3C6OB 2YB5A 3C6NB 3N1BA 4JS5A 4E4BA 1NEXB 4M41A 2OVPB 3L8BA 1XL3C 4E3SA 3TAFA 1XMHE 4M45A 2DTUA 3MKSB 2MMBA 4QNCA 1P22A 4RL5A 4ADOA 1N1CA 4FJJA 3SVIA 3OGLB 1WAJA 3L0MA 4J2EA 3NE6A 2B1EA 4FK2A 3RWUA 3CFPA 1FZ4E 2LF3A 3BVOA 1FPOA 4RG8A 3UO3A 1XU3E 4DTRA 1CLQA 1FZ5E 3K2OA 1MHZG 4J2DA 4M3TA 4DTMA 3QEIA 2P1NB 4EPHA 4GAMC 4KHNA 2JH9A 3E4YA 1XVFE 3SUPA 1XVDE 4FJGA 2MW2A 3NCIA 4AKGA 3LZJA 1WAFA 3CFRA 3V7DB 3SCXA 1FS1A 1FZ9E 3CFOA 3RMCA 2E31A 4B08A 1FZ3E 2JPNA 3QNNA 2OZMA 4KI6A 4KI4A 2JHPA 3J2PA 3C94A 2RCUA 3SUNA 2PFTA 4X5NA 1FZIE 2FYOA 3NDKA 4DU1A 3SQ4A 2FW3A 3OGMB 4AKIA 2PFVA 2P5OA 4M3ZA 3OGKB 2OVQB 5IBKB 4DU3A 3SPZA 4ADNA 4KHUA 3QESA 3QEVA 3NAEA 3TAEA 3LDBA 3SQ1A 4J2BA 4FJNA 4AI6A 2P1QB 2P1OB 4X5MA 1FZ1E 4EYWA 4RNGA 1XMGE 2VJ5A 1MHYG 2MZWB 2P5GA 5IREA 4FJMA 1XU5E 4DU4A 4DTJA 3QNOA 1FZ0E 3QEWA 4M42A 3RMBA 3SQ0A 1LDKE 2HD0A 3LD8A 4DTSA 1Q9XA 2JHAA 2H4TA 1IG9A 3NGIA 4DTUA 4KHWA 3LDSA 4HCCA 1FZ8E 3QETA 2OYQA 1FYZE 3HGKE 2VIXA 4J2AA 2QXFA 4DTOA 4FK0A 3NHGA 3SQ2A 2ATQA 4FJ5A 4HCBA 4AKHA 3HL8A 3SUQA 1XMFE 4M3WA 3WSOA 2VJ4A 2B7MA 4FVMA 3KD5E 3RMDA 3QEPA 4FJXA 2E32A 1FZHE 4QNDA 3UO2A 1XVCE 4EP9A 3TJYA 4KHQA 4FJ9A 2DEBA 4JS4A 4ICGC 2JH8A 2P1MB 4I9LA 3QERA 2OZSA 3LZIA 2K5SA 4M3XA 2DY4A 4DTXA 2B8IA 3SJJA 1XVEE 3E4WA 4FJ8A 3QEXA 4DTPA 1XVBE 4FJHA 4M3RA 3S9HA 1Q9YA 3N1EA 2P1PB 4DTNA 4I6JB 3C95A 1FZ7E 4JRQA 3HGLA 3SUOA 4IT5A 4M3UA 4FJ7A 3C6PB 4FJLA 3SPYA 2LF6A 3TL8B 3HP9A 3L2OB 3J27A 3L1NA 4JRPA 3TAGA 3SNNA 4I9QA 2JHCA 1MMOG 3CQ8A 4KHSA 3KD1E 4M3YA 4FK4A 3TABA 2RKHA 1FXXA 3UIQA 4KHYA 1FZ6E 4FJIA 1XVGE 2JQTA 1FZ2E 4FJKA 1JW2A
chains in the Genus database with same CATH topology
1MTYG 5IZ7A 1IH7A 2OVRB 5H37A 3SI6A 3RMAA 3C6OB 2YB5A 3C6NB 3N1BA 4JS5A 4E4BA 1NEXB 4M41A 2OVPB 3L8BA 1XL3C 4E3SA 3TAFA 1XMHE 4M45A 2DTUA 3MKSB 2MMBA 4QNCA 1P22A 4RL5A 4ADOA 4FJJA 3SVIA 3OGLB 1WAJA 3L0MA 4J2EA 3NE6A 2B1EA 4FK2A 3RWUA 3CFPA 1FZ4E 2LF3A 4RG8A 1XU3E 4DTRA 1CLQA 1FZ5E 3K2OA 1MHZG 4J2DA 4M3TA 4DTMA 3QEIA 2P1NB 4EPHA 4GAMC 4KHNA 2JH9A 3E4YA 1XVFE 3SUPA 1XVDE 4FJGA 3NCIA 4AKGA 3LZJA 1WAFA 3CFRA 3V7DB 3SCXA 1FS1A 1FZ9E 3CFOA 3RMCA 2E31A 4B08A 1FZ3E 2JPNA 3QNNA 2OZMA 4KI6A 4KI4A 2JHPA 3J2PA 3C94A 2RCUA 3SUNA 2PFTA 4X5NA 1FZIE 2FYOA 3NDKA 4DU1A 3SQ4A 2FW3A 3OGMB 4AKIA 2PFVA 2P5OA 4M3ZA 3OGKB 2OVQB 5IBKB 4DU3A 3SPZA 4ADNA 4KHUA 3QESA 3QEVA 3NAEA 3TAEA 3LDBA 3SQ1A 4J2BA 4FJNA 4AI6A 2P1QB 2P1OB 4X5MA 1FZ1E 4EYWA 4RNGA 1XMGE 2VJ5A 1MHYG 2MZWB 2P5GA 5IREA 4FJMA 1XU5E 4DU4A 4DTJA 3QNOA 1FZ0E 3QEWA 4M42A 3RMBA 3SQ0A 1LDKE 2HD0A 3LD8A 4DTSA 1Q9XA 2JHAA 2H4TA 1IG9A 3NGIA 4DTUA 4KHWA 3LDSA 4HCCA 1FZ8E 3QETA 2OYQA 1FYZE 3HGKE 2VIXA 4J2AA 2QXFA 4DTOA 4FK0A 3NHGA 3SQ2A 2ATQA 4FJ5A 4HCBA 4AKHA 3HL8A 3SUQA 1XMFE 4M3WA 3WSOA 2VJ4A 2B7MA 4FVMA 3KD5E 3RMDA 3QEPA 4FJXA 2E32A 1FZHE 4QNDA 1XVCE 4EP9A 3TJYA 4KHQA 4FJ9A 2DEBA 4JS4A 2JH8A 2P1MB 4I9LA 3QERA 2OZSA 3LZIA 4M3XA 2DY4A 4DTXA 2B8IA 3SJJA 1XVEE 3E4WA 4FJ8A 3QEXA 4DTPA 1XVBE 4FJHA 4M3RA 3S9HA 1Q9YA 3N1EA 2P1PB 4DTNA 4I6JB 3C95A 1FZ7E 4JRQA 3HGLA 3SUOA 4M3UA 4FJ7A 3C6PB 4FJLA 3SPYA 2LF6A 3TL8B 3HP9A 3L2OB 3J27A 3L1NA 4JRPA 3TAGA 3SNNA 4I9QA 2JHCA 1MMOG 3CQ8A 4KHSA 3KD1E 4M3YA 4FK4A 3TABA 1FXXA 3UIQA 4KHYA 1FZ6E 4FJIA 1XVGE 1FZ2E 4FJKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JPN A; 
#chains in the Genus database with same CATH topology
 1MTY G;  5IZ7 A;  1IH7 A;  2OVR B;  5H37 A;  3SI6 A;  3RMA A;  3C6O B;  2YB5 A;  3C6N B;  3N1B A;  4JS5 A;  4E4B A;  1NEX B;  4M41 A;  2OVP B;  3L8B A;  1XL3 C;  4E3S A;  3TAF A;  1XMH E;  4M45 A;  2DTU A;  3MKS B;  2MMB A;  4QNC A;  1P22 A;  4RL5 A;  4ADO A;  1N1C A;  4FJJ A;  3SVI A;  3OGL B;  1WAJ A;  3L0M A;  4J2E A;  3NE6 A;  2B1E A;  4FK2 A;  3RWU A;  3CFP A;  1FZ4 E;  2LF3 A;  3BVO A;  1FPO A;  4RG8 A;  3UO3 A;  1XU3 E;  4DTR A;  1CLQ A;  1FZ5 E;  3K2O A;  1MHZ G;  4J2D A;  4M3T A;  4DTM A;  3QEI A;  2P1N B;  4EPH A;  4GAM C;  4KHN A;  2JH9 A;  3E4Y A;  1XVF E;  3SUP A;  1XVD E;  4FJG A;  2MW2 A;  3NCI A;  4AKG A;  3LZJ A;  1WAF A;  3CFR A;  3V7D B;  3SCX A;  1FS1 A;  1FZ9 E;  3CFO A;  3RMC A;  2E31 A;  4B08 A;  1FZ3 E;  2JPN A;  3QNN A;  2OZM A;  4KI6 A;  4KI4 A;  2JHP A;  3J2P A;  3C94 A;  2RCU A;  3SUN A;  2PFT A;  4X5N A;  1FZI E;  2FYO A;  3NDK A;  4DU1 A;  3SQ4 A;  2FW3 A;  3OGM B;  4AKI A;  2PFV A;  2P5O A;  4M3Z A;  3OGK B;  2OVQ B;  5IBK B;  4DU3 A;  3SPZ A;  4ADN A;  4KHU A;  3QES A;  3QEV A;  3NAE A;  3TAE A;  3LDB A;  3SQ1 A;  4J2B A;  4FJN A;  4AI6 A;  2P1Q B;  2P1O B;  4X5M A;  1FZ1 E;  4EYW A;  4RNG A;  1XMG E;  2VJ5 A;  1MHY G;  2MZW B;  2P5G A;  5IRE A;  4FJM A;  1XU5 E;  4DU4 A;  4DTJ A;  3QNO A;  1FZ0 E;  3QEW A;  4M42 A;  3RMB A;  3SQ0 A;  1LDK E;  2HD0 A;  3LD8 A;  4DTS A;  1Q9X A;  2JHA A;  2H4T A;  1IG9 A;  3NGI A;  4DTU A;  4KHW A;  3LDS A;  4HCC A;  1FZ8 E;  3QET A;  2OYQ A;  1FYZ E;  3HGK E;  2VIX A;  4J2A A;  2QXF A;  4DTO A;  4FK0 A;  3NHG A;  3SQ2 A;  2ATQ A;  4FJ5 A;  4HCB A;  4AKH A;  3HL8 A;  3SUQ A;  1XMF E;  4M3W A;  3WSO A;  2VJ4 A;  2B7M A;  4FVM A;  3KD5 E;  3RMD A;  3QEP A;  4FJX A;  2E32 A;  1FZH E;  4QND A;  3UO2 A;  1XVC E;  4EP9 A;  3TJY A;  4KHQ A;  4FJ9 A;  2DEB A;  4JS4 A;  4ICG C;  2JH8 A;  2P1M B;  4I9L A;  3QER A;  2OZS A;  3LZI A;  2K5S A;  4M3X A;  2DY4 A;  4DTX A;  2B8I A;  3SJJ A;  1XVE E;  3E4W A;  4FJ8 A;  3QEX A;  4DTP A;  1XVB E;  4FJH A;  4M3R A;  3S9H A;  1Q9Y A;  3N1E A;  2P1P B;  4DTN A;  4I6J B;  3C95 A;  1FZ7 E;  4JRQ A;  3HGL A;  3SUO A;  4IT5 A;  4M3U A;  4FJ7 A;  3C6P B;  4FJL A;  3SPY A;  2LF6 A;  3TL8 B;  3HP9 A;  3L2O B;  3J27 A;  3L1N A;  4JRP A;  3TAG A;  3SNN A;  4I9Q A;  2JHC A;  1MMO G;  3CQ8 A;  4KHS A;  3KD1 E;  4M3Y A;  4FK4 A;  3TAB A;  2RKH A;  1FXX A;  3UIQ A;  4KHY A;  1FZ6 E;  4FJI A;  1XVG E;  2JQT A;  1FZ2 E;  4FJK A;  1JW2 A; 
#chains in the Genus database with same CATH homology
 1MTY G;  5IZ7 A;  1IH7 A;  2OVR B;  5H37 A;  3SI6 A;  3RMA A;  3C6O B;  2YB5 A;  3C6N B;  3N1B A;  4JS5 A;  4E4B A;  1NEX B;  4M41 A;  2OVP B;  3L8B A;  1XL3 C;  4E3S A;  3TAF A;  1XMH E;  4M45 A;  2DTU A;  3MKS B;  2MMB A;  4QNC A;  1P22 A;  4RL5 A;  4ADO A;  4FJJ A;  3SVI A;  3OGL B;  1WAJ A;  3L0M A;  4J2E A;  3NE6 A;  2B1E A;  4FK2 A;  3RWU A;  3CFP A;  1FZ4 E;  2LF3 A;  4RG8 A;  1XU3 E;  4DTR A;  1CLQ A;  1FZ5 E;  3K2O A;  1MHZ G;  4J2D A;  4M3T A;  4DTM A;  3QEI A;  2P1N B;  4EPH A;  4GAM C;  4KHN A;  2JH9 A;  3E4Y A;  1XVF E;  3SUP A;  1XVD E;  4FJG A;  3NCI A;  4AKG A;  3LZJ A;  1WAF A;  3CFR A;  3V7D B;  3SCX A;  1FS1 A;  1FZ9 E;  3CFO A;  3RMC A;  2E31 A;  4B08 A;  1FZ3 E;  2JPN A;  3QNN A;  2OZM A;  4KI6 A;  4KI4 A;  2JHP A;  3J2P A;  3C94 A;  2RCU A;  3SUN A;  2PFT A;  4X5N A;  1FZI E;  2FYO A;  3NDK A;  4DU1 A;  3SQ4 A;  2FW3 A;  3OGM B;  4AKI A;  2PFV A;  2P5O A;  4M3Z A;  3OGK B;  2OVQ B;  5IBK B;  4DU3 A;  3SPZ A;  4ADN A;  4KHU A;  3QES A;  3QEV A;  3NAE A;  3TAE A;  3LDB A;  3SQ1 A;  4J2B A;  4FJN A;  4AI6 A;  2P1Q B;  2P1O B;  4X5M A;  1FZ1 E;  4EYW A;  4RNG A;  1XMG E;  2VJ5 A;  1MHY G;  2MZW B;  2P5G A;  5IRE A;  4FJM A;  1XU5 E;  4DU4 A;  4DTJ A;  3QNO A;  1FZ0 E;  3QEW A;  4M42 A;  3RMB A;  3SQ0 A;  1LDK E;  2HD0 A;  3LD8 A;  4DTS A;  1Q9X A;  2JHA A;  2H4T A;  1IG9 A;  3NGI A;  4DTU A;  4KHW A;  3LDS A;  4HCC A;  1FZ8 E;  3QET A;  2OYQ A;  1FYZ E;  3HGK E;  2VIX A;  4J2A A;  2QXF A;  4DTO A;  4FK0 A;  3NHG A;  3SQ2 A;  2ATQ A;  4FJ5 A;  4HCB A;  4AKH A;  3HL8 A;  3SUQ A;  1XMF E;  4M3W A;  3WSO A;  2VJ4 A;  2B7M A;  4FVM A;  3KD5 E;  3RMD A;  3QEP A;  4FJX A;  2E32 A;  1FZH E;  4QND A;  1XVC E;  4EP9 A;  3TJY A;  4KHQ A;  4FJ9 A;  2DEB A;  4JS4 A;  2JH8 A;  2P1M B;  4I9L A;  3QER A;  2OZS A;  3LZI A;  4M3X A;  2DY4 A;  4DTX A;  2B8I A;  3SJJ A;  1XVE E;  3E4W A;  4FJ8 A;  3QEX A;  4DTP A;  1XVB E;  4FJH A;  4M3R A;  3S9H A;  1Q9Y A;  3N1E A;  2P1P B;  4DTN A;  4I6J B;  3C95 A;  1FZ7 E;  4JRQ A;  3HGL A;  3SUO A;  4M3U A;  4FJ7 A;  3C6P B;  4FJL A;  3SPY A;  2LF6 A;  3TL8 B;  3HP9 A;  3L2O B;  3J27 A;  3L1N A;  4JRP A;  3TAG A;  3SNN A;  4I9Q A;  2JHC A;  1MMO G;  3CQ8 A;  4KHS A;  3KD1 E;  4M3Y A;  4FK4 A;  3TAB A;  1FXX A;  3UIQ A;  4KHY A;  1FZ6 E;  4FJI A;  1XVG E;  1FZ2 E;  4FJK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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