2JT2A

Solution structure of the aquifex aeolicus lpxc- chir-090 complex
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
268
structure length
268
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
total genus 63
structure length 268
sequence length 268
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2007-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2jt2A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2jt2A02
4J3DA 4IS9A 1P42A 4U3DA 2O3ZA 3P3EA 1YHCA 2VESA 3PS2A 5DRPA 4OZEA 3P3CA 4LCHA 2IERA 4MQYA 5DRQA 5DRRA 2IESA 4LCFA 4OKGA 4ISAA 3P76A 3PS3A 1XXEA 2GO3A 1YH8A 4MDTA 5DROA 2J65A 4FW7A 3PS1A 4LCGA 3U1YA 4FW6A 3UHMA 3P3GA 4FW5A 4U3BA 3NZKA 4FW3A 2GO4A 2JT2A 4FW4A
chains in the Genus database with same CATH superfamily
3B82A 1NHJA 4WUCA 1N33I 1J5EE 2UUBE 4OO1A 2ZITA 2V2VA 3P3CA 4LCHA 4X65E 4DR6I 4OO1C 2O1TA 4QNJA 4JI7E 2HFUA 3T1HE 3HKMA 4DPXA 1PIEA 1HR0E 4DV2I 3M7NG 2CGEA 1J5EI 2UUBI 4OO1E 4DR1I 4DPTA 1USUA 2C39B 2JEBA 4JI2E 4JYAI 3Q6MA 2UXDE 2JE6B 3ZZUA 1N36E 1NZ0A 1S4EA 3PYGA 4MQYA 3QT6A 1XMOE 2UU9E 3PRYA 4LCFA 4OKGA 2JEBB 4JI3E 4BA2B 4LF9E 3GLLA 1S16A 3M85D 4AIMA 2PO2A 2A2CA 2BR2B 5IWAE 4DR4E 1B63A 1WUUA 4GKKE 3WU4A 4K0KE 3OTOE 2O1WA 1RHYA 5C0XB 4USKA 2UXDI 5K36B 4DV5I 5FLXC 2HK3A 1N36I 1UDOA 2C37B 3H1CA 4DR5I 4X66I 2JEAA 3K1JA 3M6AA 3J80Q 4IZJB 4LF9I 4WUDA 2IESA 4LF4E 1KIJA 3P76A 1H74A 1UEKA 2PO1A 4DR4I 3T1YE 2PNMA 2UXBE 3L7ZA 1Z0GA 4GKKI 2Z5CA 4PU9A 2R42A 4JI8E 3OTOI 4DR7I 4FWDA 1VI7A 1USVA 2EFGA 3QT7A 2V2QA 3ZKDA 1Y6ZA 1MX0A 3DD6A 1Z0BA 4HXZA 2NN6D 4OX9E 1PVGA 4B3RE 5EKWA 4NBQA 4IFDD 3T1YI 4MYUA 2BM0A 1NHHA 1XNRI 3PS3A 4MU1A 5JEAA 1ZM3A 3B4TA 5DNLA 5L3JA 2WNRA 3CWVA 3K17A 5JEAC 1OYPA 1Z5BA 4DPWA 4NXMI 2C38A 4U3BA 1OJ4A 1Z0CA 2HKJA 2UUCE 2WNRB 1RR9A 4B3RI 2VQEE 2CZ9A 1N33E 1IBME 2OI2A 4MU0A 1HNZI 5JEAE 4IZKA 3ZKBA 4JV5I 2AJ4A 1FJGI 4GQUA 2UUCI 3J80C 4DV2E 4J3DA 4U3DA 2VQEI 1FWKA 1HNWI 1UDSA 1ZXNA 4BA1B 1IBMI 2J7KA 3HULA 4DR1E 2IERA 1R6LA 2V8PA 4JYAE 1UDNA 1B62A 2V2ZA 2Z5BB 2F4VE 2J65A 4ZVIA 2O1VA 3V2UC 1Y4UA 1FWLA 3WU5A 2BV3A 2ZBKB 4I3HA 2C39A 3LNUA 4FW5A 3J81Q 2NN6A 2JE6A 4LF8I 3U1KA 4Z7YA 1H7UA 3B8HA 1BKNA 1OYSA 4DPYA 4BA2A 1U2RA 1Z0VA 2NN6B 1A6FA 4DV5E 3KRNA 1XMQI 4KHPI 5EL9A 2BR2A 2F4VI 4QNKA 4DPUA 4DR5E 4ISAA 4X62E 4X66E 4IFDB 5BR8E 1XXEA 1HNXE 5IT9Q 3QT8A 5C0XA 5K36A 4HY1A 1Y4SA 4YY3I 2C37A 5C0XC 5K36C 4DV3E 4FW4A 4FW9A 4AM3A 4IZJA 4DR7E 2IOPA 2HHHE 4MU3A 2VESA 4DR2I 1Y5YA 1D6TA 4X62I 5BR8I 2BA1D 2VQFI 1HNXI 4JI5I 1NHIA 1Z5CA 5C0XE 5K36E 4P7AA 3ZM7A 4DU7A 4B3SI 1XNRE 4DV3I 2BA0D 4FW6A 3J7AM 4M1KA 3UHMA 1IBLE 4YHHE 4LF6I 2HHHI 2E5LE 1H73A 4B3TI 4EMDA 2GQ0A 2HK2A 4NXME 4DXLA 5JEAF 2BM1A 2PNZB 4DV6I 2PO0A 4OO1D 3J7AG 1N34E 3J81C 2ZM6I 4LF7E 3GONA 5DROA 1HNZE 1IBLI 1KTVA 2PO0B 4YHHI 1R6MA 2E5LI 3ZZTA 4JV5E 2Z5EA 2NPFA 4DR3I 2AE8A 3M7ND 2UXCE 2PNLA 1FJGE 2O3ZA 4FWHA 4PRXA 4JI6E 4DUYI 5IT9C 1N34I 3QT5A 4LOMA 4LFBI 1HNWE 2CVEA 4DV1E 4LF5I 1ZM9A 2XEXA 3M85G 4LF7I 1MU5A 2Q2EB 3PYFA 5GMEA 4MDTA 1DARA 4OO1F 3H4LA 4BA1A 2UXCI 1Z0WA 3D4JA 3NZKA 2GO4A 4FW7A 2X7IA 1K47A 1P42A 4MYTA 4JI6I 4DUZI 1VISA 4RPFA 4JI1I 4DV1I 4JI4I 4LF8E 1XNQI 2Z5BA 1H7SA 4DV7I 4LFAI 3JAMQ 4X64E 1Y60A 2V34A 1FNMA 1FKAE 3B78A 4DV0I 4KHPE 1XMQE 2CG9A 4NXNE 2F1DA 4URLA 3HJCA 2IOQA 4FW3A 4GKJE 5LL6R 1N0UA 4HYMA 4IS9A 4YY3E 3P3EA 4X64I 1Z0TA 2NN6C 2HFSA 4B3MI 4AQYE 4IFDA 4OZEA 5C0XF 5K36F 2UUAI 5FWKA 4IFDC 3WU3A 4DR2E 1I94I 4NXNI 1E3HA 4OO1B 4WUBA 4JI0I 3WU6A 2VQFE 5JEAD 4JI5E 4GKJI 4Z7CA 1ZM4A 1QZRA 2NN6E 4B3SE 2WP8A 4AQYI 4X65I 3GMEA 4JI7I 4LF6E 4IFDE 3Q1QA 3PS2A 3T1HI 1KKHA 4B3TE 3P06A 2WP8B 5DRQA 1HR0I 4MU4A 1Z59A 4KQVA 5ELWA 4DV6E 1YH8A 2GS8A 3GCMA 3PYDA 4LCGA 5A2QQ 1ZM2A 2ZM6E 2VF3A 4FN5A 2PNZA 3F0NA 3JAMC 4JI2I 2JT2A 1XHKA 2DEIA 2PO2B 1Z0EA 1ZXMA 1YHCA 2WW4A 1UDQA 4DR3E 4ED4A 1XMOI 2UU9I 4JG4A 4N3OA 4JI3I 4R1FA 4DUYE 1FI4A 3LPSA 5IWAI 2X36A 4LFBE 2GO3A 5GMDA 2JEAB 4LF5E 1IBKE 3K85A 4K0KI 3U1YA 3CDJA 4FWGA 2R3VA 1PKPA 1EI1A 3P3GA 2O1UA 4UTGA 2PO1B 3L7ZB 2Z5CB 2E1RA 3PYEA 4UT4A 1N32E 1E3PA 5LMNE 4LF4I 5DRPA 4DUZE 4LPFA 2UXBI 4DV4E 4JI1E 1Z5AA 4JI4E 1IBKI 1XNQE 4DV7E 1ELOA 4JI8I 4LFAE 4LFCE 3CDIA 5LMUE 1RREA 2DEJA 4DV0E 1MG7A 2LJPA 5JEAB 1HK7A 5C0XD 1N32I 5K36D 5LMNI 4OX9I 5DNXA 4DU8A 1OYRA 2C38B 3LTOA 4DV4I 2BA1G 4IZJD 3Q6NA 4USMA 5A2QC 1KVKA 4XTJA 4AIDA 4B3ME 5DRRA 3ZZ0A 4LFCI 4HACA 4DR6E 1EA6A 1H72C 2NN6F 5FLXQ 2BA0G 5LMUI 2UUAE 2A2DA 1N0VC 3V5RA 1I94E 3PS1A 4P52A 4JI0E 4IFDF 2HKEA 4IZKB 4HACB 4PRVA
chains in the Genus database with same CATH topology
4J3DA 4IS9A 1P42A 4U3DA 2O3ZA 3P3EA 1YHCA 2VESA 3PS2A 5DRPA 4OZEA 3P3CA 4LCHA 2IERA 4MQYA 5DRQA 5DRRA 2IESA 4LCFA 4OKGA 4ISAA 3P76A 3PS3A 1XXEA 2GO3A 1YH8A 4MDTA 5DROA 2J65A 4FW7A 3PS1A 4LCGA 3U1YA 4FW6A 3UHMA 3P3GA 4FW5A 4U3BA 3NZKA 4FW3A 2GO4A 2JT2A 4FW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J3D A;  4IS9 A;  1P42 A;  4U3D A;  2O3Z A;  3P3E A;  1YHC A;  2VES A;  3PS2 A;  5DRP A;  4OZE A;  3P3C A;  4LCH A;  2IER A;  4MQY A;  5DRQ A;  5DRR A;  2IES A;  4LCF A;  4OKG A;  4ISA A;  3P76 A;  3PS3 A;  1XXE A;  2GO3 A;  1YH8 A;  4MDT A;  5DRO A;  2J65 A;  4FW7 A;  3PS1 A;  4LCG A;  3U1Y A;  4FW6 A;  3UHM A;  3P3G A;  4FW5 A;  4U3B A;  3NZK A;  4FW3 A;  2GO4 A;  2JT2 A;  4FW4 A; 
#chains in the Genus database with same CATH topology
 3B82 A;  1NHJ A;  4WUC A;  1N33 I;  1J5E E;  2UUB E;  4OO1 A;  2ZIT A;  2V2V A;  3P3C A;  4LCH A;  4X65 E;  4DR6 I;  4OO1 C;  2O1T A;  4QNJ A;  4JI7 E;  2HFU A;  3T1H E;  3HKM A;  4DPX A;  1PIE A;  1HR0 E;  4DV2 I;  3M7N G;  2CGE A;  1J5E I;  2UUB I;  4OO1 E;  4DR1 I;  4DPT A;  1USU A;  2C39 B;  2JEB A;  4JI2 E;  4JYA I;  3Q6M A;  2UXD E;  2JE6 B;  3ZZU A;  1N36 E;  1NZ0 A;  1S4E A;  3PYG A;  4MQY A;  3QT6 A;  1XMO E;  2UU9 E;  3PRY A;  4LCF A;  4OKG A;  2JEB B;  4JI3 E;  4BA2 B;  4LF9 E;  3GLL A;  1S16 A;  3M85 D;  4AIM A;  2PO2 A;  2A2C A;  2BR2 B;  5IWA E;  4DR4 E;  1B63 A;  1WUU A;  4GKK E;  3WU4 A;  4K0K E;  3OTO E;  2O1W A;  1RHY A;  5C0X B;  4USK A;  2UXD I;  5K36 B;  4DV5 I;  5FLX C;  2HK3 A;  1N36 I;  1UDO A;  2C37 B;  3H1C A;  4DR5 I;  4X66 I;  2JEA A;  3K1J A;  3M6A A;  3J80 Q;  4IZJ B;  4LF9 I;  4WUD A;  2IES A;  4LF4 E;  1KIJ A;  3P76 A;  1H74 A;  1UEK A;  2PO1 A;  4DR4 I;  3T1Y E;  2PNM A;  2UXB E;  3L7Z A;  1Z0G A;  4GKK I;  2Z5C A;  4PU9 A;  2R42 A;  4JI8 E;  3OTO I;  4DR7 I;  4FWD A;  1VI7 A;  1USV A;  2EFG A;  3QT7 A;  2V2Q A;  3ZKD A;  1Y6Z A;  1MX0 A;  3DD6 A;  1Z0B A;  4HXZ A;  2NN6 D;  4OX9 E;  1PVG A;  4B3R E;  5EKW A;  4NBQ A;  4IFD D;  3T1Y I;  4MYU A;  2BM0 A;  1NHH A;  1XNR I;  3PS3 A;  4MU1 A;  5JEA A;  1ZM3 A;  3B4T A;  5DNL A;  5L3J A;  2WNR A;  3CWV A;  3K17 A;  5JEA C;  1OYP A;  1Z5B A;  4DPW A;  4NXM I;  2C38 A;  4U3B A;  1OJ4 A;  1Z0C A;  2HKJ A;  2UUC E;  2WNR B;  1RR9 A;  4B3R I;  2VQE E;  2CZ9 A;  1N33 E;  1IBM E;  2OI2 A;  4MU0 A;  1HNZ I;  5JEA E;  4IZK A;  3ZKB A;  4JV5 I;  2AJ4 A;  1FJG I;  4GQU A;  2UUC I;  3J80 C;  4DV2 E;  4J3D A;  4U3D A;  2VQE I;  1FWK A;  1HNW I;  1UDS A;  1ZXN A;  4BA1 B;  1IBM I;  2J7K A;  3HUL A;  4DR1 E;  2IER A;  1R6L A;  2V8P A;  4JYA E;  1UDN A;  1B62 A;  2V2Z A;  2Z5B B;  2F4V E;  2J65 A;  4ZVI A;  2O1V A;  3V2U C;  1Y4U A;  1FWL A;  3WU5 A;  2BV3 A;  2ZBK B;  4I3H A;  2C39 A;  3LNU A;  4FW5 A;  3J81 Q;  2NN6 A;  2JE6 A;  4LF8 I;  3U1K A;  4Z7Y A;  1H7U A;  3B8H A;  1BKN A;  1OYS A;  4DPY A;  4BA2 A;  1U2R A;  1Z0V A;  2NN6 B;  1A6F A;  4DV5 E;  3KRN A;  1XMQ I;  4KHP I;  5EL9 A;  2BR2 A;  2F4V I;  4QNK A;  4DPU A;  4DR5 E;  4ISA A;  4X62 E;  4X66 E;  4IFD B;  5BR8 E;  1XXE A;  1HNX E;  5IT9 Q;  3QT8 A;  5C0X A;  5K36 A;  4HY1 A;  1Y4S A;  4YY3 I;  2C37 A;  5C0X C;  5K36 C;  4DV3 E;  4FW4 A;  4FW9 A;  4AM3 A;  4IZJ A;  4DR7 E;  2IOP A;  2HHH E;  4MU3 A;  2VES A;  4DR2 I;  1Y5Y A;  1D6T A;  4X62 I;  5BR8 I;  2BA1 D;  2VQF I;  1HNX I;  4JI5 I;  1NHI A;  1Z5C A;  5C0X E;  5K36 E;  4P7A A;  3ZM7 A;  4DU7 A;  4B3S I;  1XNR E;  4DV3 I;  2BA0 D;  4FW6 A;  3J7A M;  4M1K A;  3UHM A;  1IBL E;  4YHH E;  4LF6 I;  2HHH I;  2E5L E;  1H73 A;  4B3T I;  4EMD A;  2GQ0 A;  2HK2 A;  4NXM E;  4DXL A;  5JEA F;  2BM1 A;  2PNZ B;  4DV6 I;  2PO0 A;  4OO1 D;  3J7A G;  1N34 E;  3J81 C;  2ZM6 I;  4LF7 E;  3GON A;  5DRO A;  1HNZ E;  1IBL I;  1KTV A;  2PO0 B;  4YHH I;  1R6M A;  2E5L I;  3ZZT A;  4JV5 E;  2Z5E A;  2NPF A;  4DR3 I;  2AE8 A;  3M7N D;  2UXC E;  2PNL A;  1FJG E;  2O3Z A;  4FWH A;  4PRX A;  4JI6 E;  4DUY I;  5IT9 C;  1N34 I;  3QT5 A;  4LOM A;  4LFB I;  1HNW E;  2CVE A;  4DV1 E;  4LF5 I;  1ZM9 A;  2XEX A;  3M85 G;  4LF7 I;  1MU5 A;  2Q2E B;  3PYF A;  5GME A;  4MDT A;  1DAR A;  4OO1 F;  3H4L A;  4BA1 A;  2UXC I;  1Z0W A;  3D4J A;  3NZK A;  2GO4 A;  4FW7 A;  2X7I A;  1K47 A;  1P42 A;  4MYT A;  4JI6 I;  4DUZ I;  1VIS A;  4RPF A;  4JI1 I;  4DV1 I;  4JI4 I;  4LF8 E;  1XNQ I;  2Z5B A;  1H7S A;  4DV7 I;  4LFA I;  3JAM Q;  4X64 E;  1Y60 A;  2V34 A;  1FNM A;  1FKA E;  3B78 A;  4DV0 I;  4KHP E;  1XMQ E;  2CG9 A;  4NXN E;  2F1D A;  4URL A;  3HJC A;  2IOQ A;  4FW3 A;  4GKJ E;  5LL6 R;  1N0U A;  4HYM A;  4IS9 A;  4YY3 E;  3P3E A;  4X64 I;  1Z0T A;  2NN6 C;  2HFS A;  4B3M I;  4AQY E;  4IFD A;  4OZE A;  5C0X F;  5K36 F;  2UUA I;  5FWK A;  4IFD C;  3WU3 A;  4DR2 E;  1I94 I;  4NXN I;  1E3H A;  4OO1 B;  4WUB A;  4JI0 I;  3WU6 A;  2VQF E;  5JEA D;  4JI5 E;  4GKJ I;  4Z7C A;  1ZM4 A;  1QZR A;  2NN6 E;  4B3S E;  2WP8 A;  4AQY I;  4X65 I;  3GME A;  4JI7 I;  4LF6 E;  4IFD E;  3Q1Q A;  3PS2 A;  3T1H I;  1KKH A;  4B3T E;  3P06 A;  2WP8 B;  5DRQ A;  1HR0 I;  4MU4 A;  1Z59 A;  4KQV A;  5ELW A;  4DV6 E;  1YH8 A;  2GS8 A;  3GCM A;  3PYD A;  4LCG A;  5A2Q Q;  1ZM2 A;  2ZM6 E;  2VF3 A;  4FN5 A;  2PNZ A;  3F0N A;  3JAM C;  4JI2 I;  2JT2 A;  1XHK A;  2DEI A;  2PO2 B;  1Z0E A;  1ZXM A;  1YHC A;  2WW4 A;  1UDQ A;  4DR3 E;  4ED4 A;  1XMO I;  2UU9 I;  4JG4 A;  4N3O A;  4JI3 I;  4R1F A;  4DUY E;  1FI4 A;  3LPS A;  5IWA I;  2X36 A;  4LFB E;  2GO3 A;  5GMD A;  2JEA B;  4LF5 E;  1IBK E;  3K85 A;  4K0K I;  3U1Y A;  3CDJ A;  4FWG A;  2R3V A;  1PKP A;  1EI1 A;  3P3G A;  2O1U A;  4UTG A;  2PO1 B;  3L7Z B;  2Z5C B;  2E1R A;  3PYE A;  4UT4 A;  1N32 E;  1E3P A;  5LMN E;  4LF4 I;  5DRP A;  4DUZ E;  4LPF A;  2UXB I;  4DV4 E;  4JI1 E;  1Z5A A;  4JI4 E;  1IBK I;  1XNQ E;  4DV7 E;  1ELO A;  4JI8 I;  4LFA E;  4LFC E;  3CDI A;  5LMU E;  1RRE A;  2DEJ A;  4DV0 E;  1MG7 A;  2LJP A;  5JEA B;  1HK7 A;  5C0X D;  1N32 I;  5K36 D;  5LMN I;  4OX9 I;  5DNX A;  4DU8 A;  1OYR A;  2C38 B;  3LTO A;  4DV4 I;  2BA1 G;  4IZJ D;  3Q6N A;  4USM A;  5A2Q C;  1KVK A;  4XTJ A;  4AID A;  4B3M E;  5DRR A;  3ZZ0 A;  4LFC I;  4HAC A;  4DR6 E;  1EA6 A;  1H72 C;  2NN6 F;  5FLX Q;  2BA0 G;  5LMU I;  2UUA E;  2A2D A;  1N0V C;  3V5R A;  1I94 E;  3PS1 A;  4P52 A;  4JI0 E;  4IFD F;  2HKE A;  4IZK B;  4HAC B;  4PRV A; 
#chains in the Genus database with same CATH homology
 4J3D A;  4IS9 A;  1P42 A;  4U3D A;  2O3Z A;  3P3E A;  1YHC A;  2VES A;  3PS2 A;  5DRP A;  4OZE A;  3P3C A;  4LCH A;  2IER A;  4MQY A;  5DRQ A;  5DRR A;  2IES A;  4LCF A;  4OKG A;  4ISA A;  3P76 A;  3PS3 A;  1XXE A;  2GO3 A;  1YH8 A;  4MDT A;  5DRO A;  2J65 A;  4FW7 A;  3PS1 A;  4LCG A;  3U1Y A;  4FW6 A;  3UHM A;  3P3G A;  4FW5 A;  4U3B A;  3NZK A;  4FW3 A;  2GO4 A;  2JT2 A;  4FW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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