2JT2A

Solution structure of the aquifex aeolicus lpxc- chir-090 complex
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
268
structure length
268
Chain Sequence
GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 63
structure length 268
sequence length 268
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2007-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2jt2A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2jt2A02
5DROA 1P42A 2O3ZA 4FW7A 4OZEA 2J65A 1YH8A 4ISAA 4FW3A 3PS3A 2IERA 4U3BA 3U1YA 4U3DA 4OKGA 1YHCA 5DRQA 2IESA 2VESA 4LCHA 4FW4A 3PS2A 3PS1A 3P3CA 3NZKA 4J3DA 4MQYA 2GO4A 1XXEA 3P76A 4LCGA 5DRRA 2JT2A 4FW6A 3P3GA 4IS9A 2GO3A 4MDTA 4FW5A 5DRPA 4LCFA 3P3EA 3UHMA
chains in the Genus database with same CATH superfamily
3T1YI 4OO1B 1HNXE 2UUAI 1E3PA 4DPWA 2WNRA 1YH8A 4DUYI 2C38B 4FW3A 3Q1QA 3HKMA 5JEAF 4U3BA 1XNRE 5K36B 4DR1E 1I94I 3J7AG 4DV7I 1VI7A 4LFAE 5BR8E 3L7ZA 5EKWA 5FWKA 5LMNE 5JEAA 3V5RA 4IFDC 1Z5CA 1IBMI 3GLLA 5K36F 2A2DA 4JI5I 4JYAI 4DUZI 4LF4I 2V2ZA 3Q6NA 2V2VA 3LTOA 1Y5YA 3H1CA 3ZZ0A 4YHHE 3PYFA 4DPTA 4URLA 2J7KA 1N36I 1UEKA 3PYEA 1XHKA 4DPUA 1IBLI 4JI4I 2JEAA 3K85A 5DRQA 2HK3A 2F4VI 4GKKE 5FLXQ 2PO2B 1IBKI 3NZKA 5A2QC 2BA1G 1ZXNA 4ZVIA 1DARA 2PNMA 2V2QA 1ZM9A 3JAMQ 5LMUE 1U2RA 4DR6E 1RREA 3B8HA 3J81Q 2X7IA 4WUDA 2UUBE 4OZEA 2J65A 4LFBE 2CG9A 5DNXA 3CWVA 4WUBA 2GQ0A 3OTOI 4JI1E 4B3RE 3KRNA 1RHYA 1Y4UA 2NN6F 4YY3E 4AQYI 2NN6B 4DR7E 5JEAD 3T1HE 5FLXC 4J3DA 1OYPA 1J5EE 2UXBI 2GO4A 2IOPA 5C0XF 4PRVA 4X66I 4DR3I 4KHPI 2BV3A 3JAMC 4LCFA 4JI0E 1Y60A 5C0XC 2ZM6E 1Z0CA 5DROA 1HNWE 3J81C 3GONA 4QNKA 2Z5BA 4UTGA 3J80C 3U1YA 1XMQI 4USKA 2PO0A 4MU4A 1QZRA 4JI8E 4LF7I 2CZ9A 4DR3E 4Z7CA 4X62E 2PNZB 4DR2E 4MYUA 2JT2A 2ZM6I 1IBLE 4OO1A 4JI4E 2E5LI 2R42A 5IT9Q 2WP8A 4DV1I 4DV2E 1B62A 1PVGA 1EI1A 4R1FA 4OO1F 4DV2I 4DV0I 1R6LA 4DV7E 4LFAI 2BA1D 4RPFA 3WU5A 1HR0E 3J80Q 5K36E 1NZ0A 2DEJA 4MYTA 4OKGA 1N0UA 3ZKDA 4DR2I 2PO0B 4LCHA 1Z0VA 2R3VA 4FW4A 1H73A 3T1YE 5JEAB 4USMA 2PNLA 3ZM7A 2PO2A 5K36C 1H7SA 3P3GA 2CVEA 2Z5EA 4FWDA 5DNLA 4BA2B 2UXCI 4DV0E 1XNRI 1R6MA 1FWLA 2WNRB 4X64I 1N34E 4LF8E 3HULA 2UU9E 4JI7I 1EA6A 4DV3I 1Z0BA 2C37B 4JG4A 4DR4I 2ZBKB 3U1KA 5LMNI 2VESA 4JI3I 2BA0D 2JE6B 4MU3A 3B82A 4QNJA 4FWGA 2UU9I 1USUA 2UXCE 2DEIA 1N36E 5EL9A 5IWAE 1XMQE 4X64E 3M6AA 1N34I 2PO1B 2GO3A 2UUCE 1FWKA 4GQUA 4BA1A 4X65E 4DR7I 2O3ZA 1J5EI 4FWHA 5C0XE 4LF5E 1ELOA 4HACA 4ISAA 3ZZTA 2UXBE 3M85D 2NN6E 4P7AA 3CDIA 5IWAI 1KKHA 3M7NG 3ZZUA 1NHHA 3D4JA 1FNMA 2JE6A 4OO1D 1H7UA 4LCGA 4JI1I 4LFCE 3QT7A 3H4LA 4DXLA 2AE8A 4FW5A 5GMEA 1XNQI 1Z0GA 4DR5I 4I3HA 4IZJB 1KVKA 1UDNA 1N33E 1FJGI 3PS3A 4DV4I 1B63A 2BM1A 4DV4E 4DV5E 4KQVA 2JEAB 4B3SI 4NXNE 4IFDB 5L3JA 4JI6I 2NPFA 4IZKA 3F0NA 1XNQE 1HNWI 2NN6D 2Q2EB 2VQFI 4DR1I 4DR5E 1I94E 3P06A 4LF9E 2UXDE 4DU8A 1MG7A 2V34A 4HXZA 4ED4A 5C0XD 2Z5BB 5BR8I 4MU1A 1MX0A 1IBME 3GMEA 1N32E 2Z5CB 4U3DA 2JEBA 2O1VA 4NBQA 1K47A 5GMDA 3ZKBA 1HK7A 1OJ4A 2GS8A 2C39B 2V8PA 4DUYE 4HYMA 5JEAE 1WUUA 5LL6R 4BA2A 3P76A 1Z0WA 2NN6C 2BR2A 4B3MI 4IZJA 4JI7E 1HR0I 1RR9A 2E1RA 2ZITA 4BA1B 4IZJD 2LJPA 4DV6I 3B78A 4JI3E 3V2UC 1H72C 4AIMA 3Q6MA 3WU3A 1HNZE 1D6TA 2JEBB 4DR4E 5K36A 4YHHI 1UDOA 4DUZE 3PS1A 3P3CA 4LF4E 1PKPA 3WU4A 1XXEA 5DRRA 1UDSA 4DV3E 2O1WA 4HACB 4NXME 5C0XB 3K1JA 2Z5CA 1ZM3A 4AIDA 1E3HA 3GCMA 4JI0I 2E5LE 2VQEE 2UUBI 4X66E 1H74A 4X65I 3QT8A 1FI4A 4K0KE 4JI8I 3P3EA 4XTJA 1PIEA 3PYGA 1NHJA 4X62I 1MU5A 5C0XA 4NXNI 2CGEA 1Z5AA 4WUCA 1XMOI 2BM0A 2HFUA 2IESA 4EMDA 2O1TA 4MU0A 4AM3A 4IFDE 4LF8I 4K0KI 2NN6A 3DD6A 4OX9E 4LPFA 4M1KA 1KIJA 3OTOE 3B4TA 2BA0G 1XMOE 3LNUA 3UHMA 2F1DA 1KTVA 3J7AM 2WW4A 4OO1E 1N32I 2C38A 4LOMA 2HHHE 2C37A 1USVA 1OYSA 1NHIA 2UXDI 3K17A 2VQFE 4IZKB 2IOQA 5A2QQ 3PRYA 4DV1E 2HHHI 4LF5I 3QT6A 1A6FA 2HKJA 1UDQA 2X36A 4FW6A 3M85G 5ELWA 1Z5BA 1HNZI 4PU9A 4DV6E 4HY1A 1P42A 1S16A 4OO1C 1N0VC 1FKAE 4JI2E 4JI5E 2OI2A 4JYAE 1HNXI 2UUAE 4DR6I 1OYRA 2EFGA 4IFDF 1YHCA 3L7ZB 5JEAC 1IBKE 1Y6ZA 1S4EA 1BKNA 4DPXA 4UT4A 4IFDA 4JI2I 4AQYE 4MQYA 3HJCA 4B3ME 3WU6A 1ZXMA 4B3RI 2AJ4A 2HK2A 5DRPA 4N3OA 2HFSA 4DU7A 1ZM4A 4FW7A 4GKJE 2VQEI 3M7ND 3LPSA 5LMUI 4LF6I 4JV5E 4LFBI 3PYDA 3T1HI 4LF6E 4NXMI 4LFCI 1ZM2A 3PS2A 2O1UA 1Z0EA 1Y4SA 4YY3I 4GKJI 4P52A 4B3TE 2PNZA 5IT9C 4JV5I 1N33I 4JI6E 2A2CA 2BR2B 2F4VE 4GKKI 1VISA 1Z59A 4OX9I 4LF9I 2IERA 4IFDD 4LF7E 4Z7YA 2UUCI 2C39A 4B3TI 3QT5A 2XEXA 4FW9A 2VF3A 4DV5I 2PO1A 3CDJA 4B3SE 4PRXA 2HKEA 5K36D 4IS9A 1FJGE 2WP8B 4MDTA 4DPYA 4KHPE 1Z0TA 4FN5A
chains in the Genus database with same CATH topology
5DROA 1P42A 2O3ZA 4FW7A 4OZEA 2J65A 1YH8A 4ISAA 4FW3A 3PS3A 2IERA 4U3BA 3U1YA 4U3DA 4OKGA 1YHCA 5DRQA 2IESA 2VESA 4LCHA 4FW4A 3PS2A 3PS1A 3P3CA 3NZKA 4J3DA 4MQYA 2GO4A 1XXEA 3P76A 4LCGA 5DRRA 2JT2A 4FW6A 3P3GA 4IS9A 2GO3A 4MDTA 4FW5A 5DRPA 4LCFA 3P3EA 3UHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DRO A;  1P42 A;  2O3Z A;  4FW7 A;  4OZE A;  2J65 A;  1YH8 A;  4ISA A;  4FW3 A;  3PS3 A;  2IER A;  4U3B A;  3U1Y A;  4U3D A;  4OKG A;  1YHC A;  5DRQ A;  2IES A;  2VES A;  4LCH A;  4FW4 A;  3PS2 A;  3PS1 A;  3P3C A;  3NZK A;  4J3D A;  4MQY A;  2GO4 A;  1XXE A;  3P76 A;  4LCG A;  5DRR A;  2JT2 A;  4FW6 A;  3P3G A;  4IS9 A;  2GO3 A;  4MDT A;  4FW5 A;  5DRP A;  4LCF A;  3P3E A;  3UHM A; 
#chains in the Genus database with same CATH topology
 3T1Y I;  4OO1 B;  1HNX E;  2UUA I;  1E3P A;  4DPW A;  2WNR A;  1YH8 A;  4DUY I;  2C38 B;  4FW3 A;  3Q1Q A;  3HKM A;  5JEA F;  4U3B A;  1XNR E;  5K36 B;  4DR1 E;  1I94 I;  3J7A G;  4DV7 I;  1VI7 A;  4LFA E;  5BR8 E;  3L7Z A;  5EKW A;  5FWK A;  5LMN E;  5JEA A;  3V5R A;  4IFD C;  1Z5C A;  1IBM I;  3GLL A;  5K36 F;  2A2D A;  4JI5 I;  4JYA I;  4DUZ I;  4LF4 I;  2V2Z A;  3Q6N A;  2V2V A;  3LTO A;  1Y5Y A;  3H1C A;  3ZZ0 A;  4YHH E;  3PYF A;  4DPT A;  4URL A;  2J7K A;  1N36 I;  1UEK A;  3PYE A;  1XHK A;  4DPU A;  1IBL I;  4JI4 I;  2JEA A;  3K85 A;  5DRQ A;  2HK3 A;  2F4V I;  4GKK E;  5FLX Q;  2PO2 B;  1IBK I;  3NZK A;  5A2Q C;  2BA1 G;  1ZXN A;  4ZVI A;  1DAR A;  2PNM A;  2V2Q A;  1ZM9 A;  3JAM Q;  5LMU E;  1U2R A;  4DR6 E;  1RRE A;  3B8H A;  3J81 Q;  2X7I A;  4WUD A;  2UUB E;  4OZE A;  2J65 A;  4LFB E;  2CG9 A;  5DNX A;  3CWV A;  4WUB A;  2GQ0 A;  3OTO I;  4JI1 E;  4B3R E;  3KRN A;  1RHY A;  1Y4U A;  2NN6 F;  4YY3 E;  4AQY I;  2NN6 B;  4DR7 E;  5JEA D;  3T1H E;  5FLX C;  4J3D A;  1OYP A;  1J5E E;  2UXB I;  2GO4 A;  2IOP A;  5C0X F;  4PRV A;  4X66 I;  4DR3 I;  4KHP I;  2BV3 A;  3JAM C;  4LCF A;  4JI0 E;  1Y60 A;  5C0X C;  2ZM6 E;  1Z0C A;  5DRO A;  1HNW E;  3J81 C;  3GON A;  4QNK A;  2Z5B A;  4UTG A;  3J80 C;  3U1Y A;  1XMQ I;  4USK A;  2PO0 A;  4MU4 A;  1QZR A;  4JI8 E;  4LF7 I;  2CZ9 A;  4DR3 E;  4Z7C A;  4X62 E;  2PNZ B;  4DR2 E;  4MYU A;  2JT2 A;  2ZM6 I;  1IBL E;  4OO1 A;  4JI4 E;  2E5L I;  2R42 A;  5IT9 Q;  2WP8 A;  4DV1 I;  4DV2 E;  1B62 A;  1PVG A;  1EI1 A;  4R1F A;  4OO1 F;  4DV2 I;  4DV0 I;  1R6L A;  4DV7 E;  4LFA I;  2BA1 D;  4RPF A;  3WU5 A;  1HR0 E;  3J80 Q;  5K36 E;  1NZ0 A;  2DEJ A;  4MYT A;  4OKG A;  1N0U A;  3ZKD A;  4DR2 I;  2PO0 B;  4LCH A;  1Z0V A;  2R3V A;  4FW4 A;  1H73 A;  3T1Y E;  5JEA B;  4USM A;  2PNL A;  3ZM7 A;  2PO2 A;  5K36 C;  1H7S A;  3P3G A;  2CVE A;  2Z5E A;  4FWD A;  5DNL A;  4BA2 B;  2UXC I;  4DV0 E;  1XNR I;  1R6M A;  1FWL A;  2WNR B;  4X64 I;  1N34 E;  4LF8 E;  3HUL A;  2UU9 E;  4JI7 I;  1EA6 A;  4DV3 I;  1Z0B A;  2C37 B;  4JG4 A;  4DR4 I;  2ZBK B;  3U1K A;  5LMN I;  2VES A;  4JI3 I;  2BA0 D;  2JE6 B;  4MU3 A;  3B82 A;  4QNJ A;  4FWG A;  2UU9 I;  1USU A;  2UXC E;  2DEI A;  1N36 E;  5EL9 A;  5IWA E;  1XMQ E;  4X64 E;  3M6A A;  1N34 I;  2PO1 B;  2GO3 A;  2UUC E;  1FWK A;  4GQU A;  4BA1 A;  4X65 E;  4DR7 I;  2O3Z A;  1J5E I;  4FWH A;  5C0X E;  4LF5 E;  1ELO A;  4HAC A;  4ISA A;  3ZZT A;  2UXB E;  3M85 D;  2NN6 E;  4P7A A;  3CDI A;  5IWA I;  1KKH A;  3M7N G;  3ZZU A;  1NHH A;  3D4J A;  1FNM A;  2JE6 A;  4OO1 D;  1H7U A;  4LCG A;  4JI1 I;  4LFC E;  3QT7 A;  3H4L A;  4DXL A;  2AE8 A;  4FW5 A;  5GME A;  1XNQ I;  1Z0G A;  4DR5 I;  4I3H A;  4IZJ B;  1KVK A;  1UDN A;  1N33 E;  1FJG I;  3PS3 A;  4DV4 I;  1B63 A;  2BM1 A;  4DV4 E;  4DV5 E;  4KQV A;  2JEA B;  4B3S I;  4NXN E;  4IFD B;  5L3J A;  4JI6 I;  2NPF A;  4IZK A;  3F0N A;  1XNQ E;  1HNW I;  2NN6 D;  2Q2E B;  2VQF I;  4DR1 I;  4DR5 E;  1I94 E;  3P06 A;  4LF9 E;  2UXD E;  4DU8 A;  1MG7 A;  2V34 A;  4HXZ A;  4ED4 A;  5C0X D;  2Z5B B;  5BR8 I;  4MU1 A;  1MX0 A;  1IBM E;  3GME A;  1N32 E;  2Z5C B;  4U3D A;  2JEB A;  2O1V A;  4NBQ A;  1K47 A;  5GMD A;  3ZKB A;  1HK7 A;  1OJ4 A;  2GS8 A;  2C39 B;  2V8P A;  4DUY E;  4HYM A;  5JEA E;  1WUU A;  5LL6 R;  4BA2 A;  3P76 A;  1Z0W A;  2NN6 C;  2BR2 A;  4B3M I;  4IZJ A;  4JI7 E;  1HR0 I;  1RR9 A;  2E1R A;  2ZIT A;  4BA1 B;  4IZJ D;  2LJP A;  4DV6 I;  3B78 A;  4JI3 E;  3V2U C;  1H72 C;  4AIM A;  3Q6M A;  3WU3 A;  1HNZ E;  1D6T A;  2JEB B;  4DR4 E;  5K36 A;  4YHH I;  1UDO A;  4DUZ E;  3PS1 A;  3P3C A;  4LF4 E;  1PKP A;  3WU4 A;  1XXE A;  5DRR A;  1UDS A;  4DV3 E;  2O1W A;  4HAC B;  4NXM E;  5C0X B;  3K1J A;  2Z5C A;  1ZM3 A;  4AID A;  1E3H A;  3GCM A;  4JI0 I;  2E5L E;  2VQE E;  2UUB I;  4X66 E;  1H74 A;  4X65 I;  3QT8 A;  1FI4 A;  4K0K E;  4JI8 I;  3P3E A;  4XTJ A;  1PIE A;  3PYG A;  1NHJ A;  4X62 I;  1MU5 A;  5C0X A;  4NXN I;  2CGE A;  1Z5A A;  4WUC A;  1XMO I;  2BM0 A;  2HFU A;  2IES A;  4EMD A;  2O1T A;  4MU0 A;  4AM3 A;  4IFD E;  4LF8 I;  4K0K I;  2NN6 A;  3DD6 A;  4OX9 E;  4LPF A;  4M1K A;  1KIJ A;  3OTO E;  3B4T A;  2BA0 G;  1XMO E;  3LNU A;  3UHM A;  2F1D A;  1KTV A;  3J7A M;  2WW4 A;  4OO1 E;  1N32 I;  2C38 A;  4LOM A;  2HHH E;  2C37 A;  1USV A;  1OYS A;  1NHI A;  2UXD I;  3K17 A;  2VQF E;  4IZK B;  2IOQ A;  5A2Q Q;  3PRY A;  4DV1 E;  2HHH I;  4LF5 I;  3QT6 A;  1A6F A;  2HKJ A;  1UDQ A;  2X36 A;  4FW6 A;  3M85 G;  5ELW A;  1Z5B A;  1HNZ I;  4PU9 A;  4DV6 E;  4HY1 A;  1P42 A;  1S16 A;  4OO1 C;  1N0V C;  1FKA E;  4JI2 E;  4JI5 E;  2OI2 A;  4JYA E;  1HNX I;  2UUA E;  4DR6 I;  1OYR A;  2EFG A;  4IFD F;  1YHC A;  3L7Z B;  5JEA C;  1IBK E;  1Y6Z A;  1S4E A;  1BKN A;  4DPX A;  4UT4 A;  4IFD A;  4JI2 I;  4AQY E;  4MQY A;  3HJC A;  4B3M E;  3WU6 A;  1ZXM A;  4B3R I;  2AJ4 A;  2HK2 A;  5DRP A;  4N3O A;  2HFS A;  4DU7 A;  1ZM4 A;  4FW7 A;  4GKJ E;  2VQE I;  3M7N D;  3LPS A;  5LMU I;  4LF6 I;  4JV5 E;  4LFB I;  3PYD A;  3T1H I;  4LF6 E;  4NXM I;  4LFC I;  1ZM2 A;  3PS2 A;  2O1U A;  1Z0E A;  1Y4S A;  4YY3 I;  4GKJ I;  4P52 A;  4B3T E;  2PNZ A;  5IT9 C;  4JV5 I;  1N33 I;  4JI6 E;  2A2C A;  2BR2 B;  2F4V E;  4GKK I;  1VIS A;  1Z59 A;  4OX9 I;  4LF9 I;  2IER A;  4IFD D;  4LF7 E;  4Z7Y A;  2UUC I;  2C39 A;  4B3T I;  3QT5 A;  2XEX A;  4FW9 A;  2VF3 A;  4DV5 I;  2PO1 A;  3CDJ A;  4B3S E;  4PRX A;  2HKE A;  5K36 D;  4IS9 A;  1FJG E;  2WP8 B;  4MDT A;  4DPY A;  4KHP E;  1Z0T A;  4FN5 A; 
#chains in the Genus database with same CATH homology
 5DRO A;  1P42 A;  2O3Z A;  4FW7 A;  4OZE A;  2J65 A;  1YH8 A;  4ISA A;  4FW3 A;  3PS3 A;  2IER A;  4U3B A;  3U1Y A;  4U3D A;  4OKG A;  1YHC A;  5DRQ A;  2IES A;  2VES A;  4LCH A;  4FW4 A;  3PS2 A;  3PS1 A;  3P3C A;  3NZK A;  4J3D A;  4MQY A;  2GO4 A;  1XXE A;  3P76 A;  4LCG A;  5DRR A;  2JT2 A;  4FW6 A;  3P3G A;  4IS9 A;  2GO3 A;  4MDT A;  4FW5 A;  5DRP A;  4LCF A;  3P3E A;  3UHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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