2JT2A

Solution structure of the aquifex aeolicus lpxc- chir-090 complex
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
268
structure length
268
Chain Sequence
b'GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Structure of the deacetylase LpxC bound to the antibiotic CHIR-090: Time-dependent inhibition and specificity in ligand binding
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
total genus 63
structure length 268
sequence length 268
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2007-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 2jt2A01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 2jt2A02
3P76A 4J3DA 3P3EA 4FW3A 1XXEA 2IESA 3PS1A 4LCGA 3P3CA 4IS9A 4FW6A 4FW4A 3PS2A 2O3ZA 4OZEA 5DROA 1P42A 5DRRA 4FW5A 4U3BA 3UHMA 5DRPA 4FW7A 1YH8A 4LCHA 4MQYA 5DRQA 4OKGA 2GO3A 4ISAA 4MDTA 2GO4A 3PS3A 4LCFA 2VESA 3P3GA 3NZKA 1YHCA 2JT2A 2IERA 2J65A 4U3DA 3U1YA
chains in the Genus database with same CATH superfamily
4LF5I 3PS1A 4DUYE 3J7AG 1Z0VA 4LOMA 2J7KA 5C0XF 2ZM6E 1IBLE 3J81Q 3H4LA 4USKA 3CDJA 2UUAI 3K17A 4JI4E 2HFUA 5DNXA 3H1CA 4B3RE 2BA1G 5K36B 2JEBB 1VI7A 4LFBE 2PO0B 1YHCA 5JEAA 1IBKI 3B8HA 2HK3A 5LL6R 5A2QC 2O1TA 2AE8A 4DR6I 3P3EA 4OO1B 4AQYI 2F4VI 4ED4A 4DR7I 1S16A 2V8PA 4DR3E 2UXCI 2UU9I 4MDTA 1IBMI 4IFDE 3PRYA 1RHYA 2XEXA 5IWAE 1NHHA 3B4TA 4LF5E 4FWHA 4DV7I 2BA0G 2IOQA 2F1DA 1KIJA 2E5LI 1USUA 2NN6F 2UUAE 3QT8A 5EL9A 4GKJI 5FLXC 3WU4A 2PO2A 2BM0A 1XMQI 1YH8A 1Y60A 3PS3A 2PNZB 2HKJA 1IBKE 1HK7A 4HACA 3T1HI 4DU7A 2BA1D 2J65A 4DV5I 4FWGA 1N36I 4DR6E 2V2ZA 4KHPI 1XNQI 2WNRB 4K0KI 1D6TA 2E1RA 4B3TI 4MU4A 4AIDA 4LFCI 3WU6A 1OYRA 4AQYE 1H7UA 1Z5CA 2F4VE 4RPFA 2VQFI 4NXMI 4IZKB 1N32I 5K36E 2UUBE 2C38B 4URLA 4X62I 4JI5I 2UXCE 2UU9E 2GO3A 1IBME 1ZM2A 3QT5A 1FI4A 3F0NA 1XHKA 5LMNI 3JAMQ 2ZBKB 4YHHE 3ZZ0A 5JEAF 3CDIA 4LFBI 4PRXA 4DV7E 1PVGA 1Y4SA 2R3VA 4UTGA 3B82A 4OO1E 4J3DA 4X65I 4UT4A 1Y4UA 2NN6B 2E5LE 4JI1I 5K36C 4IFDD 4GKJE 1HR0I 1OYPA 2BA0D 3WU3A 1XMQE 4QNKA 3V5RA 4MQYA 1VISA 2CGEA 4OKGA 3ZM7A 4ISAA 3PYFA 2WW4A 3DD6A 3T1HE 2JT2A 4DV5E 3Q6MA 1N36E 2C37B 4KHPE 1XNQE 4K0KE 4B3TE 2DEIA 4LFCE 4IFDA 1Y6ZA 2DEJA 1OJ4A 2VQFE 1Z0WA 4NXME 1N32E 4BA2A 2NPFA 4FWDA 4X62E 4JI5E 3M7NG 1ELOA 2CG9A 4U3BA 4JI2I 4M1KA 4DV4I 2PNLA 5DRPA 2EFGA 1UEKA 2V2VA 4FW7A 4LCHA 4JI6I 5JEAB 2JEAA 5LMNE 1ZXMA 3U1KA 3CWVA 1WUUA 4HXZA 3M6AA 5K36D 1B63A 3ZZUA 4X65E 4IZJB 1A6FA 3J7AM 4FW3A 1E3PA 1ZXNA 4NXNI 5ELWA 3OTOI 4YY3I 4JI1E 1UDNA 5A2QQ 1HR0E 2O1VA 1FJGI 1RR9A 2O3ZA 3T1YI 1P42A 1UDOA 3LTOA 4JYAI 5DRRA 4EMDA 2HHHI 4OO1D 3HJCA 3ZKBA 1MX0A 2UUBI 1H74A 1H73A 4LF9I 3QT6A 5K36A 5IT9C 2PO0A 4QNJA 2OI2A 3Q6NA 4X66I 3WU5A 4YHHI 3U1YA 4JI3I 1DARA 2X36A 5C0XB 4DUZI 1PKPA 1H7SA 4MU1A 4JI2E 4DV4E 1R6LA 1ZM9A 2HKEA 1HNZI 4JI6E 2O1UA 2V2QA 1H72C 3K85A 1EI1A 5FWKA 3M7ND 4LCFA 4IFDC 5FLXQ 4WUCA 4I3HA 1PIEA 2Z5CB 1Z0CA 4LPFA 4XTJA 3D4JA 2A2DA 4KQVA 2C39B 1XNRI 2HFSA 1K47A 2HK2A 2UXBE 1MG7A 3GONA 4NXNE 4FW9A 3OTOE 4YY3E 3M85G 1KKHA 4WUBA 4IFDF 1FJGE 3T1YE 4JYAE 3HKMA 1FWLA 2VQEI 2HHHE 1NHIA 5JEAE 1Z0EA 4OX9I 4GQUA 2PO1B 5LMUI 5DRQA 4AM3A 4DV6I 4LF9E 4LF6I 2UXDI 2JE6A 4X66E 3PYGA 1USVA 4JI3E 4DUZE 3P06A 2WP8A 4B3SI 4LF8E 4PU9A 3ZKDA 4GKKI 1HNZE 2Z5BA 3JAMC 4FW5A 3L7ZB 2C38A 4BA1B 4LFAI 2O1WA 2VESA 5K36F 1XNRE 2R42A 5C0XE 4DV1I 4DR5I 4OO1C 4DPXA 4P7AA 3LNUA 4U3DA 3Q1QA 2GS8A 3P76A 4DPTA 1B62A 1RREA 3P3CA 4FW6A 1HNWI 2AJ4A 2BR2A 2VQEE 5EKWA 1NZ0A 2CVEA 4OX9E 1EA6A 3M85D 5LMUE 4DPUA 4DV0I 4DV6E 4LF6E 2UXDE 3J80C 4NBQA 5C0XC 1J5EE 4DV3I 4DXLA 2Z5EA 1OYSA 4JG4A 4MU0A 5JEAD 3KRNA 3J81C 2C37A 1NHJA 2IESA 1UDQA 2UUCI 2UXBI 4IS9A 4B3SE 3GMEA 4JI7I 4IZJD 1HNXI 4GKKE 3PS2A 4DR4I 4WUDA 1Z0GA 3V2UC 4LFAE 1N33I 1FNMA 2BM1A 1I94I 2BV3A 3NZKA 4DV1E 4DR5E 1Z5AA 4DPYA 2JEBA 4USMA 1Z59A 1N34I 4N3OA 2NN6E 4IZJA 5IT9Q 1HNWE 4B3MI 1N0VC 4FN5A 2ZITA 4X64I 4ZVIA 4FW4A 4DPWA 5C0XD 4OO1A 4JI0I 2PO2B 4DV0E 4LF8I 3ZZTA 1UDSA 2A2CA 4HYMA 2Q2EB 4DV3E 4HACB 3PYEA 5GMEA 4LF7I 5BR8I 2NN6C 2PNMA 5L3JA 4Z7YA 2UUCE 5C0XA 1N0UA 4JI7E 5DNLA 1HNXE 1ZM4A 4DR4E 4JV5I 3K1JA 1Y5YA 4DV2I 4HY1A 2GQ0A 3B78A 1KTVA 4LF4I 1XMOI 1N33E 4JI8I 2VF3A 1I94E 4DR2I 2JE6B 1R6MA 1ZM3A 3P3GA 1N34E 1J5EI 2PNZA 4DR1I 2Z5CA 4P52A 2C39A 2WP8B 4B3ME 1XXEA 4X64E 4LCGA 2IOPA 4DU8A 1Z0BA 2WNRA 4DUYI 1MU5A 1FWKA 2Z5BB 2ZM6I 3PYDA 1IBLI 4JI0E 3GLLA 4MYTA 5JEAC 4OZEA 4DR7E 5DROA 3LPSA 4MYUA 2NN6D 2LJPA 4AIMA 4IZKA 1QZRA 2V34A 2PO1A 4JI4I 1BKNA 4LF7E 4B3RI 5BR8E 1E3HA 1FKAE 4IFDB 2BR2B 4PRVA 4JV5E 1Z0TA 3GCMA 4BA2B 2NN6A 3HULA 4DV2E 4Z7CA 2X7IA 4OO1F 4LF4E 1XMOE 4JI8E 3QT7A 3UHMA 4DR2E 2JEAB 3L7ZA 2CZ9A 4R1FA 1S4EA 2GO4A 4BA1A 4DR3I 1Z5BA 4DR1E 2IERA 1U2RA 4MU3A 3J80Q 1KVKA 5IWAI 5GMDA
chains in the Genus database with same CATH topology
3P76A 4J3DA 3P3EA 4FW3A 1XXEA 2IESA 3PS1A 4LCGA 3P3CA 4IS9A 4FW6A 4FW4A 3PS2A 2O3ZA 4OZEA 5DROA 1P42A 5DRRA 4FW5A 4U3BA 3UHMA 5DRPA 4FW7A 1YH8A 4LCHA 4MQYA 5DRQA 4OKGA 2GO3A 4ISAA 4MDTA 2GO4A 3PS3A 4LCFA 2VESA 3P3GA 3NZKA 1YHCA 2JT2A 2IERA 2J65A 4U3DA 3U1YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P76 A;  4J3D A;  3P3E A;  4FW3 A;  1XXE A;  2IES A;  3PS1 A;  4LCG A;  3P3C A;  4IS9 A;  4FW6 A;  4FW4 A;  3PS2 A;  2O3Z A;  4OZE A;  5DRO A;  1P42 A;  5DRR A;  4FW5 A;  4U3B A;  3UHM A;  5DRP A;  4FW7 A;  1YH8 A;  4LCH A;  4MQY A;  5DRQ A;  4OKG A;  2GO3 A;  4ISA A;  4MDT A;  2GO4 A;  3PS3 A;  4LCF A;  2VES A;  3P3G A;  3NZK A;  1YHC A;  2JT2 A;  2IER A;  2J65 A;  4U3D A;  3U1Y A; 
#chains in the Genus database with same CATH topology
 4LF5 I;  3PS1 A;  4DUY E;  3J7A G;  1Z0V A;  4LOM A;  2J7K A;  5C0X F;  2ZM6 E;  1IBL E;  3J81 Q;  3H4L A;  4USK A;  3CDJ A;  2UUA I;  3K17 A;  4JI4 E;  2HFU A;  5DNX A;  3H1C A;  4B3R E;  2BA1 G;  5K36 B;  2JEB B;  1VI7 A;  4LFB E;  2PO0 B;  1YHC A;  5JEA A;  1IBK I;  3B8H A;  2HK3 A;  5LL6 R;  5A2Q C;  2O1T A;  2AE8 A;  4DR6 I;  3P3E A;  4OO1 B;  4AQY I;  2F4V I;  4ED4 A;  4DR7 I;  1S16 A;  2V8P A;  4DR3 E;  2UXC I;  2UU9 I;  4MDT A;  1IBM I;  4IFD E;  3PRY A;  1RHY A;  2XEX A;  5IWA E;  1NHH A;  3B4T A;  4LF5 E;  4FWH A;  4DV7 I;  2BA0 G;  2IOQ A;  2F1D A;  1KIJ A;  2E5L I;  1USU A;  2NN6 F;  2UUA E;  3QT8 A;  5EL9 A;  4GKJ I;  5FLX C;  3WU4 A;  2PO2 A;  2BM0 A;  1XMQ I;  1YH8 A;  1Y60 A;  3PS3 A;  2PNZ B;  2HKJ A;  1IBK E;  1HK7 A;  4HAC A;  3T1H I;  4DU7 A;  2BA1 D;  2J65 A;  4DV5 I;  4FWG A;  1N36 I;  4DR6 E;  2V2Z A;  4KHP I;  1XNQ I;  2WNR B;  4K0K I;  1D6T A;  2E1R A;  4B3T I;  4MU4 A;  4AID A;  4LFC I;  3WU6 A;  1OYR A;  4AQY E;  1H7U A;  1Z5C A;  2F4V E;  4RPF A;  2VQF I;  4NXM I;  4IZK B;  1N32 I;  5K36 E;  2UUB E;  2C38 B;  4URL A;  4X62 I;  4JI5 I;  2UXC E;  2UU9 E;  2GO3 A;  1IBM E;  1ZM2 A;  3QT5 A;  1FI4 A;  3F0N A;  1XHK A;  5LMN I;  3JAM Q;  2ZBK B;  4YHH E;  3ZZ0 A;  5JEA F;  3CDI A;  4LFB I;  4PRX A;  4DV7 E;  1PVG A;  1Y4S A;  2R3V A;  4UTG A;  3B82 A;  4OO1 E;  4J3D A;  4X65 I;  4UT4 A;  1Y4U A;  2NN6 B;  2E5L E;  4JI1 I;  5K36 C;  4IFD D;  4GKJ E;  1HR0 I;  1OYP A;  2BA0 D;  3WU3 A;  1XMQ E;  4QNK A;  3V5R A;  4MQY A;  1VIS A;  2CGE A;  4OKG A;  3ZM7 A;  4ISA A;  3PYF A;  2WW4 A;  3DD6 A;  3T1H E;  2JT2 A;  4DV5 E;  3Q6M A;  1N36 E;  2C37 B;  4KHP E;  1XNQ E;  4K0K E;  4B3T E;  2DEI A;  4LFC E;  4IFD A;  1Y6Z A;  2DEJ A;  1OJ4 A;  2VQF E;  1Z0W A;  4NXM E;  1N32 E;  4BA2 A;  2NPF A;  4FWD A;  4X62 E;  4JI5 E;  3M7N G;  1ELO A;  2CG9 A;  4U3B A;  4JI2 I;  4M1K A;  4DV4 I;  2PNL A;  5DRP A;  2EFG A;  1UEK A;  2V2V A;  4FW7 A;  4LCH A;  4JI6 I;  5JEA B;  2JEA A;  5LMN E;  1ZXM A;  3U1K A;  3CWV A;  1WUU A;  4HXZ A;  3M6A A;  5K36 D;  1B63 A;  3ZZU A;  4X65 E;  4IZJ B;  1A6F A;  3J7A M;  4FW3 A;  1E3P A;  1ZXN A;  4NXN I;  5ELW A;  3OTO I;  4YY3 I;  4JI1 E;  1UDN A;  5A2Q Q;  1HR0 E;  2O1V A;  1FJG I;  1RR9 A;  2O3Z A;  3T1Y I;  1P42 A;  1UDO A;  3LTO A;  4JYA I;  5DRR A;  4EMD A;  2HHH I;  4OO1 D;  3HJC A;  3ZKB A;  1MX0 A;  2UUB I;  1H74 A;  1H73 A;  4LF9 I;  3QT6 A;  5K36 A;  5IT9 C;  2PO0 A;  4QNJ A;  2OI2 A;  3Q6N A;  4X66 I;  3WU5 A;  4YHH I;  3U1Y A;  4JI3 I;  1DAR A;  2X36 A;  5C0X B;  4DUZ I;  1PKP A;  1H7S A;  4MU1 A;  4JI2 E;  4DV4 E;  1R6L A;  1ZM9 A;  2HKE A;  1HNZ I;  4JI6 E;  2O1U A;  2V2Q A;  1H72 C;  3K85 A;  1EI1 A;  5FWK A;  3M7N D;  4LCF A;  4IFD C;  5FLX Q;  4WUC A;  4I3H A;  1PIE A;  2Z5C B;  1Z0C A;  4LPF A;  4XTJ A;  3D4J A;  2A2D A;  4KQV A;  2C39 B;  1XNR I;  2HFS A;  1K47 A;  2HK2 A;  2UXB E;  1MG7 A;  3GON A;  4NXN E;  4FW9 A;  3OTO E;  4YY3 E;  3M85 G;  1KKH A;  4WUB A;  4IFD F;  1FJG E;  3T1Y E;  4JYA E;  3HKM A;  1FWL A;  2VQE I;  2HHH E;  1NHI A;  5JEA E;  1Z0E A;  4OX9 I;  4GQU A;  2PO1 B;  5LMU I;  5DRQ A;  4AM3 A;  4DV6 I;  4LF9 E;  4LF6 I;  2UXD I;  2JE6 A;  4X66 E;  3PYG A;  1USV A;  4JI3 E;  4DUZ E;  3P06 A;  2WP8 A;  4B3S I;  4LF8 E;  4PU9 A;  3ZKD A;  4GKK I;  1HNZ E;  2Z5B A;  3JAM C;  4FW5 A;  3L7Z B;  2C38 A;  4BA1 B;  4LFA I;  2O1W A;  2VES A;  5K36 F;  1XNR E;  2R42 A;  5C0X E;  4DV1 I;  4DR5 I;  4OO1 C;  4DPX A;  4P7A A;  3LNU A;  4U3D A;  3Q1Q A;  2GS8 A;  3P76 A;  4DPT A;  1B62 A;  1RRE A;  3P3C A;  4FW6 A;  1HNW I;  2AJ4 A;  2BR2 A;  2VQE E;  5EKW A;  1NZ0 A;  2CVE A;  4OX9 E;  1EA6 A;  3M85 D;  5LMU E;  4DPU A;  4DV0 I;  4DV6 E;  4LF6 E;  2UXD E;  3J80 C;  4NBQ A;  5C0X C;  1J5E E;  4DV3 I;  4DXL A;  2Z5E A;  1OYS A;  4JG4 A;  4MU0 A;  5JEA D;  3KRN A;  3J81 C;  2C37 A;  1NHJ A;  2IES A;  1UDQ A;  2UUC I;  2UXB I;  4IS9 A;  4B3S E;  3GME A;  4JI7 I;  4IZJ D;  1HNX I;  4GKK E;  3PS2 A;  4DR4 I;  4WUD A;  1Z0G A;  3V2U C;  4LFA E;  1N33 I;  1FNM A;  2BM1 A;  1I94 I;  2BV3 A;  3NZK A;  4DV1 E;  4DR5 E;  1Z5A A;  4DPY A;  2JEB A;  4USM A;  1Z59 A;  1N34 I;  4N3O A;  2NN6 E;  4IZJ A;  5IT9 Q;  1HNW E;  4B3M I;  1N0V C;  4FN5 A;  2ZIT A;  4X64 I;  4ZVI A;  4FW4 A;  4DPW A;  5C0X D;  4OO1 A;  4JI0 I;  2PO2 B;  4DV0 E;  4LF8 I;  3ZZT A;  1UDS A;  2A2C A;  4HYM A;  2Q2E B;  4DV3 E;  4HAC B;  3PYE A;  5GME A;  4LF7 I;  5BR8 I;  2NN6 C;  2PNM A;  5L3J A;  4Z7Y A;  2UUC E;  5C0X A;  1N0U A;  4JI7 E;  5DNL A;  1HNX E;  1ZM4 A;  4DR4 E;  4JV5 I;  3K1J A;  1Y5Y A;  4DV2 I;  4HY1 A;  2GQ0 A;  3B78 A;  1KTV A;  4LF4 I;  1XMO I;  1N33 E;  4JI8 I;  2VF3 A;  1I94 E;  4DR2 I;  2JE6 B;  1R6M A;  1ZM3 A;  3P3G A;  1N34 E;  1J5E I;  2PNZ A;  4DR1 I;  2Z5C A;  4P52 A;  2C39 A;  2WP8 B;  4B3M E;  1XXE A;  4X64 E;  4LCG A;  2IOP A;  4DU8 A;  1Z0B A;  2WNR A;  4DUY I;  1MU5 A;  1FWK A;  2Z5B B;  2ZM6 I;  3PYD A;  1IBL I;  4JI0 E;  3GLL A;  4MYT A;  5JEA C;  4OZE A;  4DR7 E;  5DRO A;  3LPS A;  4MYU A;  2NN6 D;  2LJP A;  4AIM A;  4IZK A;  1QZR A;  2V34 A;  2PO1 A;  4JI4 I;  1BKN A;  4LF7 E;  4B3R I;  5BR8 E;  1E3H A;  1FKA E;  4IFD B;  2BR2 B;  4PRV A;  4JV5 E;  1Z0T A;  3GCM A;  4BA2 B;  2NN6 A;  3HUL A;  4DV2 E;  4Z7C A;  2X7I A;  4OO1 F;  4LF4 E;  1XMO E;  4JI8 E;  3QT7 A;  3UHM A;  4DR2 E;  2JEA B;  3L7Z A;  2CZ9 A;  4R1F A;  1S4E A;  2GO4 A;  4BA1 A;  4DR3 I;  1Z5B A;  4DR1 E;  2IER A;  1U2R A;  4MU3 A;  3J80 Q;  1KVK A;  5IWA I;  5GMD A; 
#chains in the Genus database with same CATH homology
 3P76 A;  4J3D A;  3P3E A;  4FW3 A;  1XXE A;  2IES A;  3PS1 A;  4LCG A;  3P3C A;  4IS9 A;  4FW6 A;  4FW4 A;  3PS2 A;  2O3Z A;  4OZE A;  5DRO A;  1P42 A;  5DRR A;  4FW5 A;  4U3B A;  3UHM A;  5DRP A;  4FW7 A;  1YH8 A;  4LCH A;  4MQY A;  5DRQ A;  4OKG A;  2GO3 A;  4ISA A;  4MDT A;  2GO4 A;  3PS3 A;  4LCF A;  2VES A;  3P3G A;  3NZK A;  1YHC A;  2JT2 A;  2IER A;  2J65 A;  4U3D A;  3U1Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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