2JTSA

Rhodanese with anions from e. coli
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
85
structure length
85
Chain Sequence
AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Phage shock protein E
publication title Solution structures and backbone dynamics of Escherichia coli rhodanese PspE in its sulfur-free and persulfide-intermediate forms: implications for the catalytic mechanism of rhodanese.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 85
sequence length 85
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2007-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2jtsA00
5HBQA 1OKGA 1TQ1A 3R2UA 1BOHA 2MOIA 1RHSA 1HZMA 2KL3A 4JGTA 1C25A 3FS5A 2IFVA 3IWHA 4WH9A 1T3KA 2WLXA 3GK5A 1YMLA 2JTRA 1CWSA 3ICRA 5LAOA 3TG3A 1H4MX 3O3WA 1CWTA 1QXNA 1VEEA 2IFDA 3NT6A 3ILMA 3I3UA 3NTAA 1E0CA 2MOLA 3TP9A 2K0ZA 3HIXA 3NHVA 2EG4A 3K9RA 2JTSA 3AAXA 3D1PA 4OCGA 2A2KA 3OLHA 4WH7A 3FLHA 5HBLA 2OUCA 2FSXA 3IPPA 3TG1B 1H4KX 3HZUA 2ORAA 2VSWA 1DP2A 1YS0A 1GMXA 1YMDA 3UTNX 1YMKA 3G5JA 3ICSA 1ORBA 1YM9A 1URHA 3NTDA 2GWFA 1BOIA 2J6PA 1CWRA 1GN0A 2JTQA 2HHGA 3AAYA 5LAMA 2WLRA 1YT8A 3IPOA 5HBOA 1WHBA 2MRMA 1RHDA 3MZZA 5HPAA 1WV9A 3FOJA 5HBPA 2EG3A 3ICTA 1QB0A 3OP3A 2DCQA 4F67A 3F4AA 3HWIA 2EG4B 1UARA 3FNJA 3P3AA 2UZQA 3I2VA
chains in the Genus database with same CATH superfamily
5HBQA 1OKGA 1TQ1A 3R2UA 1BOHA 2MOIA 1RHSA 1HZMA 2KL3A 4JGTA 1C25A 3FS5A 2IFVA 3IWHA 4WH9A 1T3KA 2WLXA 3GK5A 1YMLA 2JTRA 1CWSA 3ICRA 5LAOA 3TG3A 1H4MX 3O3WA 1CWTA 1QXNA 1VEEA 2IFDA 3NT6A 3ILMA 3I3UA 3NTAA 1E0CA 2MOLA 3TP9A 2K0ZA 3HIXA 3NHVA 2EG4A 3K9RA 2JTSA 3AAXA 3D1PA 4OCGA 2Q82A 2A2KA 3OLHA 4WH7A 3FLHA 5HBLA 2OUCA 2FSXA 3IPPA 3TG1B 1H4KX 3HZUA 2ORAA 2VSWA 1DP2A 1YS0A 1GMXA 1YMDA 3UTNX 1YMKA 3G5JA 3ICSA 1ORBA 1YM9A 1URHA 3NTDA 2GWFA 1BOIA 2J6PA 1CWRA 1GN0A 2JTQA 2HHGA 3AAYA 5LAMA 2WLRA 1YT8A 3IPOA 5HBOA 1WHBA 2MRMA 1RHDA 3MZZA 5HPAA 1WV9A 3FOJA 5HBPA 2EG3A 3ICTA 1QB0A 3OP3A 2DCQA 4F67A 3F4AA 3HWIA 2EG4B 1UARA 3FNJA 3P3AA 2UZQA 3I2VA
chains in the Genus database with same CATH topology
5HBQA 1OKGA 1TQ1A 3R2UA 1BOHA 2MOIA 1RHSA 1HZMA 2KL3A 4JGTA 1C25A 3FS5A 2IFVA 3IWHA 4WH9A 1T3KA 2WLXA 3GK5A 1YMLA 2JTRA 1CWSA 3ICRA 5LAOA 3TG3A 1H4MX 3O3WA 1CWTA 1QXNA 1VEEA 2IFDA 3NT6A 3ILMA 3I3UA 3NTAA 1E0CA 2MOLA 3TP9A 2K0ZA 3HIXA 3NHVA 2EG4A 3K9RA 2JTSA 3AAXA 3D1PA 4OCGA 2A2KA 3OLHA 4WH7A 3FLHA 5HBLA 2OUCA 2FSXA 3IPPA 3TG1B 1H4KX 3HZUA 2ORAA 2VSWA 1DP2A 1YS0A 1GMXA 1YMDA 3UTNX 1YMKA 3G5JA 3ICSA 1ORBA 1YM9A 1URHA 3NTDA 2GWFA 1BOIA 2J6PA 1CWRA 1GN0A 2JTQA 2HHGA 3AAYA 5LAMA 2WLRA 1YT8A 3IPOA 5HBOA 1WHBA 2MRMA 1RHDA 3MZZA 5HPAA 1WV9A 3FOJA 5HBPA 2EG3A 3ICTA 1QB0A 3OP3A 2DCQA 4F67A 3F4AA 3HWIA 2EG4B 1UARA 3FNJA 3P3AA 2UZQA 3I2VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HBQ A;  1OKG A;  1TQ1 A;  3R2U A;  1BOH A;  2MOI A;  1RHS A;  1HZM A;  2KL3 A;  4JGT A;  1C25 A;  3FS5 A;  2IFV A;  3IWH A;  4WH9 A;  1T3K A;  2WLX A;  3GK5 A;  1YML A;  2JTR A;  1CWS A;  3ICR A;  5LAO A;  3TG3 A;  1H4M X;  3O3W A;  1CWT A;  1QXN A;  1VEE A;  2IFD A;  3NT6 A;  3ILM A;  3I3U A;  3NTA A;  1E0C A;  2MOL A;  3TP9 A;  2K0Z A;  3HIX A;  3NHV A;  2EG4 A;  3K9R A;  2JTS A;  3AAX A;  3D1P A;  4OCG A;  2A2K A;  3OLH A;  4WH7 A;  3FLH A;  5HBL A;  2OUC A;  2FSX A;  3IPP A;  3TG1 B;  1H4K X;  3HZU A;  2ORA A;  2VSW A;  1DP2 A;  1YS0 A;  1GMX A;  1YMD A;  3UTN X;  1YMK A;  3G5J A;  3ICS A;  1ORB A;  1YM9 A;  1URH A;  3NTD A;  2GWF A;  1BOI A;  2J6P A;  1CWR A;  1GN0 A;  2JTQ A;  2HHG A;  3AAY A;  5LAM A;  2WLR A;  1YT8 A;  3IPO A;  5HBO A;  1WHB A;  2MRM A;  1RHD A;  3MZZ A;  5HPA A;  1WV9 A;  3FOJ A;  5HBP A;  2EG3 A;  3ICT A;  1QB0 A;  3OP3 A;  2DCQ A;  4F67 A;  3F4A A;  3HWI A;  2EG4 B;  1UAR A;  3FNJ A;  3P3A A;  2UZQ A;  3I2V A; 
#chains in the Genus database with same CATH topology
 5HBQ A;  1OKG A;  1TQ1 A;  3R2U A;  1BOH A;  2MOI A;  1RHS A;  1HZM A;  2KL3 A;  4JGT A;  1C25 A;  3FS5 A;  2IFV A;  3IWH A;  4WH9 A;  1T3K A;  2WLX A;  3GK5 A;  1YML A;  2JTR A;  1CWS A;  3ICR A;  5LAO A;  3TG3 A;  1H4M X;  3O3W A;  1CWT A;  1QXN A;  1VEE A;  2IFD A;  3NT6 A;  3ILM A;  3I3U A;  3NTA A;  1E0C A;  2MOL A;  3TP9 A;  2K0Z A;  3HIX A;  3NHV A;  2EG4 A;  3K9R A;  2JTS A;  3AAX A;  3D1P A;  4OCG A;  2Q82 A;  2A2K A;  3OLH A;  4WH7 A;  3FLH A;  5HBL A;  2OUC A;  2FSX A;  3IPP A;  3TG1 B;  1H4K X;  3HZU A;  2ORA A;  2VSW A;  1DP2 A;  1YS0 A;  1GMX A;  1YMD A;  3UTN X;  1YMK A;  3G5J A;  3ICS A;  1ORB A;  1YM9 A;  1URH A;  3NTD A;  2GWF A;  1BOI A;  2J6P A;  1CWR A;  1GN0 A;  2JTQ A;  2HHG A;  3AAY A;  5LAM A;  2WLR A;  1YT8 A;  3IPO A;  5HBO A;  1WHB A;  2MRM A;  1RHD A;  3MZZ A;  5HPA A;  1WV9 A;  3FOJ A;  5HBP A;  2EG3 A;  3ICT A;  1QB0 A;  3OP3 A;  2DCQ A;  4F67 A;  3F4A A;  3HWI A;  2EG4 B;  1UAR A;  3FNJ A;  3P3A A;  2UZQ A;  3I2V A; 
#chains in the Genus database with same CATH homology
 5HBQ A;  1OKG A;  1TQ1 A;  3R2U A;  1BOH A;  2MOI A;  1RHS A;  1HZM A;  2KL3 A;  4JGT A;  1C25 A;  3FS5 A;  2IFV A;  3IWH A;  4WH9 A;  1T3K A;  2WLX A;  3GK5 A;  1YML A;  2JTR A;  1CWS A;  3ICR A;  5LAO A;  3TG3 A;  1H4M X;  3O3W A;  1CWT A;  1QXN A;  1VEE A;  2IFD A;  3NT6 A;  3ILM A;  3I3U A;  3NTA A;  1E0C A;  2MOL A;  3TP9 A;  2K0Z A;  3HIX A;  3NHV A;  2EG4 A;  3K9R A;  2JTS A;  3AAX A;  3D1P A;  4OCG A;  2A2K A;  3OLH A;  4WH7 A;  3FLH A;  5HBL A;  2OUC A;  2FSX A;  3IPP A;  3TG1 B;  1H4K X;  3HZU A;  2ORA A;  2VSW A;  1DP2 A;  1YS0 A;  1GMX A;  1YMD A;  3UTN X;  1YMK A;  3G5J A;  3ICS A;  1ORB A;  1YM9 A;  1URH A;  3NTD A;  2GWF A;  1BOI A;  2J6P A;  1CWR A;  1GN0 A;  2JTQ A;  2HHG A;  3AAY A;  5LAM A;  2WLR A;  1YT8 A;  3IPO A;  5HBO A;  1WHB A;  2MRM A;  1RHD A;  3MZZ A;  5HPA A;  1WV9 A;  3FOJ A;  5HBP A;  2EG3 A;  3ICT A;  1QB0 A;  3OP3 A;  2DCQ A;  4F67 A;  3F4A A;  3HWI A;  2EG4 B;  1UAR A;  3FNJ A;  3P3A A;  2UZQ A;  3I2V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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