2JVMA

Solution nmr structure of rhodobacter sphaeroides protein rhos4_26430. northeast structural genomics consortium target rhr95
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
80
structure length
80
Chain Sequence
MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR Structure of Rhodobacter sphaeroides protein RHOS4_26430.
rcsb
molecule tags Structural genomics, unknown function
source organism Rhodobacter sphaeroides 2.4.1
molecule keywords Uncharacterized protein
total genus 7
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2007-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10276 zf-CHCC Zinc-finger domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.40 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain q5lls5 like domains 2jvmA01
2JZ8A 2ODXA 2JVMA 2JRRA
chains in the Genus database with same CATH superfamily
3TJAA 2B26A 4L3KA 3TJ9A 1NLTA 3I38A 3TJ8A 2QLDA 3L9ZA 1C3GA 1GMUA 1GMWA 1GMWD 1EARA 3AGXA 2ODXA 2Q2GA 3NY0A 3AKOB 3AGZA 1XAOA 2JRRA 4J80A 1GMVA 3LA0A 1EB0A 3NXZA 2JZ8A 3C6EC 3LZ8A 3C5XC 3AGYA 2JVMA
chains in the Genus database with same CATH topology
2JZ8A 2ODXA 2JVMA 2JRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JZ8 A;  2ODX A;  2JVM A;  2JRR A; 
#chains in the Genus database with same CATH topology
 3TJA A;  2B26 A;  4L3K A;  3TJ9 A;  1NLT A;  3I38 A;  3TJ8 A;  2QLD A;  3L9Z A;  1C3G A;  1GMU A;  1GMW A;  1GMW D;  1EAR A;  3AGX A;  2ODX A;  2Q2G A;  3NY0 A;  3AKO B;  3AGZ A;  1XAO A;  2JRR A;  4J80 A;  1GMV A;  3LA0 A;  1EB0 A;  3NXZ A;  2JZ8 A;  3C6E C;  3LZ8 A;  3C5X C;  3AGY A;  2JVM A; 
#chains in the Genus database with same CATH homology
 2JZ8 A;  2ODX A;  2JVM A;  2JRR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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