2JW6A

Solution structure of the deaf1 mynd domain
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
42
structure length
42
Chain Sequence
SCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Deformed epidermal autoregulatory factor 1 homolog
publication title Retraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508].
pubmed rcsb
source organism Homo sapiens
total genus 11
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 2007-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01753 zf-MYND MYND finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.180 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2jw6A00
5HI7A 3OXLA 2JW6A 5EX3A 5HQ8A 5EX0A 3RU0A 2ODDA 3OXFA 2OD1A 4A24A 3MEKA 3OXGA 5CCMA 3PDNA 3QWPA 5CCLA
chains in the Genus database with same CATH superfamily
5FUVA 2NU4I 1R0RI 2QQDA 2JYYA 1OVOA 1CGII 1HJAI 4L9MA 1N13A 5E3QA 1CHOI 1HDLA 1R79A 2WCYA 2NU0I 1K7VA 4E1RA 2SGEI 2YQPA 1SGYI 3VDPA 1M8BA 1MJAA 1RFHA 2E73A 2WGCA 2ARPF 2CWHA 4FKDA 2F3CI 2N71A 2RC4A 1UVFA 2ODDA 1SGEI 2JZMA 1FY7A 3QTLD 1HPTA 2JA1A 1UVGA 2GVIA 3SEKC 3UEYA 4DNCA 2BUSA 1IY5A 2V1CA 2LB7A 1XBTA 2QQCA 3BJIA 1TUSA 5J8FA 3HH2C 1HEVA 4A24A 3MEKA 2GKTI 2ORWA 5CCMA 2YUUA 1PJUA 1OMUA 1K7TA 4UXHA 1SGQI 5FUXA 1ULNA 2JW6A 1WTJA 4UXJA 2P6AC 3E2IA 1CT0I 1TBOA 1X74A 2CJSC 2E5RA 3VDUA 5E3PA 1OMTA 2KMPA 2OU2A 1LR9A 1P9ZA 1K7UA 2X52A 2CWGA 1FYBA 2PQ8A 2RIJA 1KBEA 2KMQA 1IW4A 2XRCA 2M5XA 1BUSA 2K9HA 2ENZA 1TOTA 2SGQI 1WGCA 2V53A 7WGAA 4JCVE 1LR8A 1PPFI 1ULMA 1TBNA 2JXDA 3UFFA 1TBQR 2DKVA 3FSYA 2Y0MA 2GIVA 1NUBA 9WGAA 2UZ3A 2WVJA 3OXGA 5J8CA 1Y8FA 1S20A 3OL0A 3TOAA 1LR7A 1V1HA 1XA6A 2OVOA 4E1PA 3D00A 1Z7KB 1Z2IA 3OVOA 1IY6A 2GKVA 1TURA 2A20A 1TIHA 3UGIA 2ORVA 1X4SA 1PTQA 2X3TA 3FSXA 3VE5A 4WP4A 1OYVI 1Y1BA 5DAEA 2SGDI 2ERWA 2OD1A 3TOBA 1FAQA 2ENNA 3R5CA 4B6DA 3E59A 3R5BA 1M8CA 1U5KA 4MPIA 3FC3A 2B8TA 1KBFA 1MT1A 2VRWB 2N52A 2NU1I 5EX3A 3R5DA 1Y1CA 1DS3I 5HI7A 2DB6A 3TO6A 1UUCA 1W4RA 2KMOA 4GI3C 1SGPI 1TGSI 2N17A 1TBRR 1SGRI 2SGPI 1BMOA 2LUYA 3SGQI 1Q9BA 5E3RA 1UHAA 3B4VC 1FARA 3TO9A 3GOXA 2NU2I 3UOEA 2ELIA 3UEJA 1XX6A 2N1AB 1PCEA 1ULKA 4OVOA 2ROWA 2FNFX 3PDNA 2L7XA 2UVOA 2W0TA 3TO7A 1CGJI 3OXLA 1SGDI 2V1CC 1YTPA 1DS2I 4SGBI 2KCXA 1CSOI 2CWFA 3R5AA 1V1IA 1SGNI 5CCLA 1H0ZA 2QQEA 2QPOA 3CXLA 1MJBA 2GKRI 2J9RA 5EX0A 3TJQA 5FUYA 1CT4I 3OXFA 2DIPA 2KMRA 4HGUA 1NXUA 1W3SA 2LEOA 3UGDA 5JHWC 2QQ0A 1CE3A 2B0UC 1MJ9A 2SGFI 5HQ8A 1YU6C 1KMAA 3RU0A 1PTRA 4UXIA 1VDDA 1AN1I 2J87A 3QAHA 2NU3I 3SGBI 3QWPA 1WKXA 2OZUA 3KY9A 2L8EA 1CT2I 3UGLA 1P9GA 4AMLA 5FUWA 1WGTA
chains in the Genus database with same CATH topology
5FUVA 2NU4I 1R0RI 2QQDA 2JYYA 1OVOA 1CGII 1HJAI 4L9MA 1N13A 1CHOI 1HDLA 1R79A 2WCYA 2NU0I 4E1RA 2SGEI 2YQPA 1SGYI 3VDPA 1M8BA 1RFHA 2E73A 2ARPF 4FKDA 2F3CI 2N71A 1UVFA 2ODDA 1SGEI 2JZMA 3SEKC 3QTLD 1HPTA 2JA1A 1UVGA 2GVIA 3UEYA 2BUSA 1IY5A 2V1CA 3BJIA 1XBTA 2QQCA 1TUSA 3HH2C 4A24A 3MEKA 2GKTI 2ORWA 5CCMA 2YUUA 1PJUA 1OMUA 4UXHA 5FUXA 1SGQI 2JW6A 4UXJA 2P6AC 3E2IA 1CT0I 1TBOA 1X74A 2CJSC 2E5RA 3VDUA 1OMTA 2KMPA 1LR9A 1FYBA 1KBEA 2KMQA 1IW4A 2XRCA 2M5XA 1BUSA 2K9HA 2ENZA 1TOTA 2SGQI 2V53A 4JCVE 1LR8A 1PPFI 2JXDA 1TBNA 3UFFA 1TBQR 1NUBA 2UZ3A 2WVJA 3OXGA 1Y8FA 3OL0A 1LR7A 1V1HA 1XA6A 2OVOA 4E1PA 3D00A 1Z7KB 3OVOA 1IY6A 2GKVA 2A20A 1TURA 1TIHA 3UGIA 2ORVA 1X4SA 1PTQA 3VE5A 1OYVI 1Y1BA 5DAEA 2SGDI 2ERWA 2OD1A 1FAQA 2ENNA 4B6DA 3E59A 1M8CA 1U5KA 3FC3A 2B8TA 1KBFA 1MT1A 2VRWB 2N52A 2NU1I 5EX3A 1Y1CA 1DS3I 5HI7A 2DB6A 1UUCA 1W4RA 2KMOA 4GI3C 1SGPI 1TGSI 2N17A 1TBRR 1SGRI 2SGPI 1BMOA 2LUYA 3SGQI 3GOXA 3B4VC 1FARA 2NU2I 2ELIA 3UEJA 1XX6A 2N1AB 1PCEA 4OVOA 2ROWA 2FNFX 3PDNA 2L7XA 2W0TA 1CGJI 3OXLA 1SGDI 2V1CC 1YTPA 1DS2I 4SGBI 2KCXA 1CSOI 1V1IA 1SGNI 5CCLA 1H0ZA 2QQEA 2QPOA 3CXLA 2GKRI 2J9RA 5EX0A 3TJQA 5FUYA 1CT4I 3OXFA 2DIPA 2KMRA 4HGUA 1W3SA 2LEOA 3UGDA 5JHWC 2QQ0A 1CE3A 2B0UC 2SGFI 5HQ8A 1YU6C 1KMAA 3RU0A 1PTRA 4UXIA 1VDDA 1AN1I 2J87A 2NU3I 3SGBI 3QWPA 3KY9A 2L8EA 1CT2I 3UGLA 5FUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HI7 A;  3OXL A;  2JW6 A;  5EX3 A;  5HQ8 A;  5EX0 A;  3RU0 A;  2ODD A;  3OXF A;  2OD1 A;  4A24 A;  3MEK A;  3OXG A;  5CCM A;  3PDN A;  3QWP A;  5CCL A; 
#chains in the Genus database with same CATH topology
 5FUV A;  2NU4 I;  1R0R I;  2QQD A;  2JYY A;  1OVO A;  1CGI I;  1HJA I;  4L9M A;  1N13 A;  5E3Q A;  1CHO I;  1HDL A;  1R79 A;  2WCY A;  2NU0 I;  1K7V A;  4E1R A;  2SGE I;  2YQP A;  1SGY I;  3VDP A;  1M8B A;  1MJA A;  1RFH A;  2E73 A;  2WGC A;  2ARP F;  2CWH A;  4FKD A;  2F3C I;  2N71 A;  2RC4 A;  1UVF A;  2ODD A;  1SGE I;  2JZM A;  1FY7 A;  3QTL D;  1HPT A;  2JA1 A;  1UVG A;  2GVI A;  3SEK C;  3UEY A;  4DNC A;  2BUS A;  1IY5 A;  2V1C A;  2LB7 A;  1XBT A;  2QQC A;  3BJI A;  1TUS A;  5J8F A;  3HH2 C;  1HEV A;  4A24 A;  3MEK A;  2GKT I;  2ORW A;  5CCM A;  2YUU A;  1PJU A;  1OMU A;  1K7T A;  4UXH A;  1SGQ I;  5FUX A;  1ULN A;  2JW6 A;  1WTJ A;  4UXJ A;  2P6A C;  3E2I A;  1CT0 I;  1TBO A;  1X74 A;  2CJS C;  2E5R A;  3VDU A;  5E3P A;  1OMT A;  2KMP A;  2OU2 A;  1LR9 A;  1P9Z A;  1K7U A;  2X52 A;  2CWG A;  1FYB A;  2PQ8 A;  2RIJ A;  1KBE A;  2KMQ A;  1IW4 A;  2XRC A;  2M5X A;  1BUS A;  2K9H A;  2ENZ A;  1TOT A;  2SGQ I;  1WGC A;  2V53 A;  7WGA A;  4JCV E;  1LR8 A;  1PPF I;  1ULM A;  1TBN A;  2JXD A;  3UFF A;  1TBQ R;  2DKV A;  3FSY A;  2Y0M A;  2GIV A;  1NUB A;  9WGA A;  2UZ3 A;  2WVJ A;  3OXG A;  5J8C A;  1Y8F A;  1S20 A;  3OL0 A;  3TOA A;  1LR7 A;  1V1H A;  1XA6 A;  2OVO A;  4E1P A;  3D00 A;  1Z7K B;  1Z2I A;  3OVO A;  1IY6 A;  2GKV A;  1TUR A;  2A20 A;  1TIH A;  3UGI A;  2ORV A;  1X4S A;  1PTQ A;  2X3T A;  3FSX A;  3VE5 A;  4WP4 A;  1OYV I;  1Y1B A;  5DAE A;  2SGD I;  2ERW A;  2OD1 A;  3TOB A;  1FAQ A;  2ENN A;  3R5C A;  4B6D A;  3E59 A;  3R5B A;  1M8C A;  1U5K A;  4MPI A;  3FC3 A;  2B8T A;  1KBF A;  1MT1 A;  2VRW B;  2N52 A;  2NU1 I;  5EX3 A;  3R5D A;  1Y1C A;  1DS3 I;  5HI7 A;  2DB6 A;  3TO6 A;  1UUC A;  1W4R A;  2KMO A;  4GI3 C;  1SGP I;  1TGS I;  2N17 A;  1TBR R;  1SGR I;  2SGP I;  1BMO A;  2LUY A;  3SGQ I;  1Q9B A;  5E3R A;  1UHA A;  3B4V C;  1FAR A;  3TO9 A;  3GOX A;  2NU2 I;  3UOE A;  2ELI A;  3UEJ A;  1XX6 A;  2N1A B;  1PCE A;  1ULK A;  4OVO A;  2ROW A;  2FNF X;  3PDN A;  2L7X A;  2UVO A;  2W0T A;  3TO7 A;  1CGJ I;  3OXL A;  1SGD I;  2V1C C;  1YTP A;  1DS2 I;  4SGB I;  2KCX A;  1CSO I;  2CWF A;  3R5A A;  1V1I A;  1SGN I;  5CCL A;  1H0Z A;  2QQE A;  2QPO A;  3CXL A;  1MJB A;  2GKR I;  2J9R A;  5EX0 A;  3TJQ A;  5FUY A;  1CT4 I;  3OXF A;  2DIP A;  2KMR A;  4HGU A;  1NXU A;  1W3S A;  2LEO A;  3UGD A;  5JHW C;  2QQ0 A;  1CE3 A;  2B0U C;  1MJ9 A;  2SGF I;  5HQ8 A;  1YU6 C;  1KMA A;  3RU0 A;  1PTR A;  4UXI A;  1VDD A;  1AN1 I;  2J87 A;  3QAH A;  2NU3 I;  3SGB I;  3QWP A;  1WKX A;  2OZU A;  3KY9 A;  2L8E A;  1CT2 I;  3UGL A;  1P9G A;  4AML A;  5FUW A;  1WGT A; 
#chains in the Genus database with same CATH homology
 5FUV A;  2NU4 I;  1R0R I;  2QQD A;  2JYY A;  1OVO A;  1CGI I;  1HJA I;  4L9M A;  1N13 A;  1CHO I;  1HDL A;  1R79 A;  2WCY A;  2NU0 I;  4E1R A;  2SGE I;  2YQP A;  1SGY I;  3VDP A;  1M8B A;  1RFH A;  2E73 A;  2ARP F;  4FKD A;  2F3C I;  2N71 A;  1UVF A;  2ODD A;  1SGE I;  2JZM A;  3SEK C;  3QTL D;  1HPT A;  2JA1 A;  1UVG A;  2GVI A;  3UEY A;  2BUS A;  1IY5 A;  2V1C A;  3BJI A;  1XBT A;  2QQC A;  1TUS A;  3HH2 C;  4A24 A;  3MEK A;  2GKT I;  2ORW A;  5CCM A;  2YUU A;  1PJU A;  1OMU A;  4UXH A;  5FUX A;  1SGQ I;  2JW6 A;  4UXJ A;  2P6A C;  3E2I A;  1CT0 I;  1TBO A;  1X74 A;  2CJS C;  2E5R A;  3VDU A;  1OMT A;  2KMP A;  1LR9 A;  1FYB A;  1KBE A;  2KMQ A;  1IW4 A;  2XRC A;  2M5X A;  1BUS A;  2K9H A;  2ENZ A;  1TOT A;  2SGQ I;  2V53 A;  4JCV E;  1LR8 A;  1PPF I;  2JXD A;  1TBN A;  3UFF A;  1TBQ R;  1NUB A;  2UZ3 A;  2WVJ A;  3OXG A;  1Y8F A;  3OL0 A;  1LR7 A;  1V1H A;  1XA6 A;  2OVO A;  4E1P A;  3D00 A;  1Z7K B;  3OVO A;  1IY6 A;  2GKV A;  2A20 A;  1TUR A;  1TIH A;  3UGI A;  2ORV A;  1X4S A;  1PTQ A;  3VE5 A;  1OYV I;  1Y1B A;  5DAE A;  2SGD I;  2ERW A;  2OD1 A;  1FAQ A;  2ENN A;  4B6D A;  3E59 A;  1M8C A;  1U5K A;  3FC3 A;  2B8T A;  1KBF A;  1MT1 A;  2VRW B;  2N52 A;  2NU1 I;  5EX3 A;  1Y1C A;  1DS3 I;  5HI7 A;  2DB6 A;  1UUC A;  1W4R A;  2KMO A;  4GI3 C;  1SGP I;  1TGS I;  2N17 A;  1TBR R;  1SGR I;  2SGP I;  1BMO A;  2LUY A;  3SGQ I;  3GOX A;  3B4V C;  1FAR A;  2NU2 I;  2ELI A;  3UEJ A;  1XX6 A;  2N1A B;  1PCE A;  4OVO A;  2ROW A;  2FNF X;  3PDN A;  2L7X A;  2W0T A;  1CGJ I;  3OXL A;  1SGD I;  2V1C C;  1YTP A;  1DS2 I;  4SGB I;  2KCX A;  1CSO I;  1V1I A;  1SGN I;  5CCL A;  1H0Z A;  2QQE A;  2QPO A;  3CXL A;  2GKR I;  2J9R A;  5EX0 A;  3TJQ A;  5FUY A;  1CT4 I;  3OXF A;  2DIP A;  2KMR A;  4HGU A;  1W3S A;  2LEO A;  3UGD A;  5JHW C;  2QQ0 A;  1CE3 A;  2B0U C;  2SGF I;  5HQ8 A;  1YU6 C;  1KMA A;  3RU0 A;  1PTR A;  4UXI A;  1VDD A;  1AN1 I;  2J87 A;  2NU3 I;  3SGB I;  3QWP A;  3KY9 A;  2L8E A;  1CT2 I;  3UGL A;  5FUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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