2JWGA

Structure of a glycosylphosphatidylinositol-anchored domain from a trypanosome variant surface glycoprotein
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
46
structure length
46
Chain Sequence
GKSPEAECNKITEEPKCSEEKICSWHKEVKAGEKNCQFNSTKASKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein, immune system
molecule keywords Variant surface glycoprotein ILTAT 1.24
publication title Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
pubmed doi rcsb
source organism Trypanosoma
total genus 7
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1680.30 Alpha Beta 2-Layer Sandwich ligand-binding face of the semaphorins, domain 2 ligand-binding face of the semaphorins, domain 2 2jwgA00
2JWGA
chains in the Genus database with same CATH superfamily
2VDRB 2P28A 4Z7OB 2UZYB 2VDNB 4WJKB 4Z7NB 3NIGB 1YUKA 1TYEB 3OKWA 3VI3B 3AL8A 3OL2A 1SHYB 3ZDYB 3NIFB 3ZDZB 3ZE1B 3ZE2B 2VDKB 3T3MB 3FCUB 2VDMB 4WK2B 1U8CB 2P26A 4WK0B 5E6SB 5E6UB 4Z7QB 4O3TB 3AFCA 3VI4B 2VDLB 4UM9D 5E6RB 4UM9B 4UM8B 4O3UB 5HDBB 2VC2B 3NVQA 4GZ8A 3ZE0B 1OLZA 2VDOB 2JWHA 4K3JB 4FWWA 3AL8B 3T3PB 2VDQB 3OKYB 3AL9A 3OL2B 2VDPB 3ZDXB 1SSLA 2JWGA 3NIDB 4WK4B
chains in the Genus database with same CATH topology
2VDRB 2P28A 4Z7OB 2UZYB 2VDNB 4WJKB 4Z7NB 3NIGB 1YUKA 1TYEB 3OKWA 3VI3B 3AL8A 3OL2A 1SHYB 3ZDYB 3NIFB 3ZDZB 3ZE1B 3ZE2B 2VDKB 3T3MB 3FCUB 2VDMB 4WK2B 1U8CB 2P26A 4WK0B 5E6SB 5E6UB 4Z7QB 4O3TB 3AFCA 3VI4B 2VDLB 4UM9D 5E6RB 4UM9B 4UM8B 4O3UB 5HDBB 2VC2B 3NVQA 4GZ8A 3ZE0B 1OLZA 2VDOB 2JWHA 4K3JB 4FWWA 3AL8B 3T3PB 2VDQB 3OKYB 3AL9A 3OL2B 2VDPB 3ZDXB 1SSLA 2JWGA 3NIDB 4WK4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JWG A; 
#chains in the Genus database with same CATH topology
 2VDR B;  2P28 A;  4Z7O B;  2UZY B;  2VDN B;  4WJK B;  4Z7N B;  3NIG B;  1YUK A;  1TYE B;  3OKW A;  3VI3 B;  3AL8 A;  3OL2 A;  1SHY B;  3ZDY B;  3NIF B;  3ZDZ B;  3ZE1 B;  3ZE2 B;  2VDK B;  3T3M B;  3FCU B;  2VDM B;  4WK2 B;  1U8C B;  2P26 A;  4WK0 B;  5E6S B;  5E6U B;  4Z7Q B;  4O3T B;  3AFC A;  3VI4 B;  2VDL B;  4UM9 D;  5E6R B;  4UM9 B;  4UM8 B;  4O3U B;  5HDB B;  2VC2 B;  3NVQ A;  4GZ8 A;  3ZE0 B;  1OLZ A;  2VDO B;  2JWH A;  4K3J B;  4FWW A;  3AL8 B;  3T3P B;  2VDQ B;  3OKY B;  3AL9 A;  3OL2 B;  2VDP B;  3ZDX B;  1SSL A;  2JWG A;  3NID B;  4WK4 B; 
#chains in the Genus database with same CATH homology
 2VDR B;  2P28 A;  4Z7O B;  2UZY B;  2VDN B;  4WJK B;  4Z7N B;  3NIG B;  1YUK A;  1TYE B;  3OKW A;  3VI3 B;  3AL8 A;  3OL2 A;  1SHY B;  3ZDY B;  3NIF B;  3ZDZ B;  3ZE1 B;  3ZE2 B;  2VDK B;  3T3M B;  3FCU B;  2VDM B;  4WK2 B;  1U8C B;  2P26 A;  4WK0 B;  5E6S B;  5E6U B;  4Z7Q B;  4O3T B;  3AFC A;  3VI4 B;  2VDL B;  4UM9 D;  5E6R B;  4UM9 B;  4UM8 B;  4O3U B;  5HDB B;  2VC2 B;  3NVQ A;  4GZ8 A;  3ZE0 B;  1OLZ A;  2VDO B;  2JWH A;  4K3J B;  4FWW A;  3AL8 B;  3T3P B;  2VDQ B;  3OKY B;  3AL9 A;  3OL2 B;  2VDP B;  3ZDX B;  1SSL A;  2JWG A;  3NID B;  4WK4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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