2JXIA

Solution structure of the dna-binding domain of pseudomonas putida proline utilization a (puta) bound to gttgca dna sequence
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
45
structure length
45
Chain Sequence
MATTTLGVKLDDPTRERLKAAAQSIDRTPHWLIKQAIFNYLEKLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Dna binding protein, dna
molecule keywords Proline dehydrogenase
publication title Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex
pubmed doi rcsb
total genus 13
structure length 45
sequence length 45
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2jxiA01
3GXQA 2BNWA 2RBFA 4HV0A 2JXIA 1BDTA 2HZAA 1EA4A 1ARQA 1PARA 2KELA 1QTGA 1BDVA 4ME7E 2HZVA 2BJ9A 2BNZA 2WVDA 3VEBA 2K6LA 2WVBA 2WVFA 2BJ8A 2BJ1A 2BJ3A 3QOQA 1NLAA 2K9IA 3H87C 1U9PA 2CPGA 3FMTA 4D8JA 1MYLA 2WVCA 1B28A 2BJ7A 2K5JA 2BA3A 1IRQA 4FXEA 2CAJA 3VW4A 2K1OA 3VEAA 2AY0A 3LGHA 1MNTA 1MYKA 2CAXA 2JXGA 1B01A 2WVEA 2GPEA 2CA9A 1P94A 2CADA 1ARRA 3FT7A 2K29A 1Q5VA 2JXHA 2BSQE 3OD2A 1X93A 1BAZA 2H1OE
chains in the Genus database with same CATH superfamily
3GXQA 4LQ3A 4HV0A 2Q2KA 2JXIA 1EA4A 4ME7E 3SFGA 2BJ9A 2WVDA 4QPXA 2WVFA 3G5OA 3UQSA 3QOQA 1NLAA 2K9IA 3H87C 2KKEA 4LQ9A 2B43A 3UR0A 2K1OA 2KOEA 1MYKA 1SH0A 3FT7A 2JXHA 2H1OE 2RBFA 1BDTA 3NAIA 2K6LA 2BJ3A 3FMTA 4D8JA 3H5YA 2BJ7A 2CAJA 2AY0A 4AAIA 1Q5VA 3VW4A 3IR7A 2K5JA 1SIWA 4MJWA 4LRVA 3NO7A 2CKWA 4NRUA 2ADLA 2HZAA 2JBVA 1PARA 1ARQA 2KELA 1QTGA 2HZVA 3LJPA 2BNZA 3BSNA 1Q16A 2WVBA 4O4RA 1OG7A 2A2BA 1U9PA 1SH2A 2WVCA 1OHNA 3VEAA 2CAXA 2CA9A 2CADA 1SH3A 1ARRA 2WK4A 2BSQE 3OD2A 3SFUA 1BAZA 2BNWA 1BDVA 3UPFA 3VEBA 2BJ8A 2BJ1A 3H5XA 2UUWA 2CPGA 3BSOA 3NNEA 1MYLA 1B28A 2UUTA 2BA3A 1IRQA 4FXEA 2AN7A 3LGHA 1MNTA 4NRTA 2JXGA 1B01A 2WVEA 2GPEA 1P94A 2H3AA 2K29A 3NAHA 1X93A 3QIDA
chains in the Genus database with same CATH topology
3GXQA 2BNWA 2RBFA 4HV0A 2JXIA 1BDTA 2HZAA 1EA4A 1ARQA 1PARA 2KELA 1QTGA 1BDVA 4ME7E 2HZVA 2BJ9A 2BNZA 2WVDA 3VEBA 2K6LA 2WVBA 2WVFA 2BJ8A 2BJ1A 2BJ3A 3QOQA 1NLAA 2K9IA 3H87C 1U9PA 2CPGA 3FMTA 4D8JA 1MYLA 2WVCA 1B28A 2BJ7A 2K5JA 2BA3A 1IRQA 4FXEA 2CAJA 3VW4A 2K1OA 3VEAA 2AY0A 3LGHA 1MNTA 1MYKA 2CAXA 2JXGA 1B01A 2WVEA 2GPEA 2CA9A 1P94A 2CADA 1ARRA 3FT7A 2K29A 1Q5VA 2JXHA 2BSQE 3OD2A 1X93A 1BAZA 2H1OE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GXQ A;  2BNW A;  2RBF A;  4HV0 A;  2JXI A;  1BDT A;  2HZA A;  1EA4 A;  1ARQ A;  1PAR A;  2KEL A;  1QTG A;  1BDV A;  4ME7 E;  2HZV A;  2BJ9 A;  2BNZ A;  2WVD A;  3VEB A;  2K6L A;  2WVB A;  2WVF A;  2BJ8 A;  2BJ1 A;  2BJ3 A;  3QOQ A;  1NLA A;  2K9I A;  3H87 C;  1U9P A;  2CPG A;  3FMT A;  4D8J A;  1MYL A;  2WVC A;  1B28 A;  2BJ7 A;  2K5J A;  2BA3 A;  1IRQ A;  4FXE A;  2CAJ A;  3VW4 A;  2K1O A;  3VEA A;  2AY0 A;  3LGH A;  1MNT A;  1MYK A;  2CAX A;  2JXG A;  1B01 A;  2WVE A;  2GPE A;  2CA9 A;  1P94 A;  2CAD A;  1ARR A;  3FT7 A;  2K29 A;  1Q5V A;  2JXH A;  2BSQ E;  3OD2 A;  1X93 A;  1BAZ A;  2H1O E; 
#chains in the Genus database with same CATH topology
 3GXQ A;  4LQ3 A;  4HV0 A;  2Q2K A;  2JXI A;  1EA4 A;  4ME7 E;  3SFG A;  2BJ9 A;  2WVD A;  4QPX A;  2WVF A;  3G5O A;  3UQS A;  3QOQ A;  1NLA A;  2K9I A;  3H87 C;  2KKE A;  4LQ9 A;  2B43 A;  3UR0 A;  2K1O A;  2KOE A;  1MYK A;  1SH0 A;  3FT7 A;  2JXH A;  2H1O E;  2RBF A;  1BDT A;  3NAI A;  2K6L A;  2BJ3 A;  3FMT A;  4D8J A;  3H5Y A;  2BJ7 A;  2CAJ A;  2AY0 A;  4AAI A;  1Q5V A;  3VW4 A;  3IR7 A;  2K5J A;  1SIW A;  4MJW A;  4LRV A;  3NO7 A;  2CKW A;  4NRU A;  2ADL A;  2HZA A;  2JBV A;  1PAR A;  1ARQ A;  2KEL A;  1QTG A;  2HZV A;  3LJP A;  2BNZ A;  3BSN A;  1Q16 A;  2WVB A;  4O4R A;  1OG7 A;  2A2B A;  1U9P A;  1SH2 A;  2WVC A;  1OHN A;  3VEA A;  2CAX A;  2CA9 A;  2CAD A;  1SH3 A;  1ARR A;  2WK4 A;  2BSQ E;  3OD2 A;  3SFU A;  1BAZ A;  2BNW A;  1BDV A;  3UPF A;  3VEB A;  2BJ8 A;  2BJ1 A;  3H5X A;  2UUW A;  2CPG A;  3BSO A;  3NNE A;  1MYL A;  1B28 A;  2UUT A;  2BA3 A;  1IRQ A;  4FXE A;  2AN7 A;  3LGH A;  1MNT A;  4NRT A;  2JXG A;  1B01 A;  2WVE A;  2GPE A;  1P94 A;  2H3A A;  2K29 A;  3NAH A;  1X93 A;  3QID A; 
#chains in the Genus database with same CATH homology
 3GXQ A;  2BNW A;  2RBF A;  4HV0 A;  2JXI A;  1BDT A;  2HZA A;  1EA4 A;  1ARQ A;  1PAR A;  2KEL A;  1QTG A;  1BDV A;  4ME7 E;  2HZV A;  2BJ9 A;  2BNZ A;  2WVD A;  3VEB A;  2K6L A;  2WVB A;  2WVF A;  2BJ8 A;  2BJ1 A;  2BJ3 A;  3QOQ A;  1NLA A;  2K9I A;  3H87 C;  1U9P A;  2CPG A;  3FMT A;  4D8J A;  1MYL A;  2WVC A;  1B28 A;  2BJ7 A;  2K5J A;  2BA3 A;  1IRQ A;  4FXE A;  2CAJ A;  3VW4 A;  2K1O A;  3VEA A;  2AY0 A;  3LGH A;  1MNT A;  1MYK A;  2CAX A;  2JXG A;  1B01 A;  2WVE A;  2GPE A;  2CA9 A;  1P94 A;  2CAD A;  1ARR A;  3FT7 A;  2K29 A;  1Q5V A;  2JXH A;  2BSQ E;  3OD2 A;  1X93 A;  1BAZ A;  2H1O E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...