2JZ4A

Putative 32 kda myrosinase binding protein at3g16450.1 from arabidopsis thaliana
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
299
structure length
299
Chain Sequence
AQKVEAGGGAGGASWDDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHGKKTLLGFETFEVDADDYIVAVQVTYDNVFGQDSDIITSITFNTFKGKTSPPYGLETQKKFVLKDKNGGKLVGFHGRAGEALYALGAYFATTTTPVTPAKKLSAIGGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHGKPTLLGFEEFEIDYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLEAGTAFELKEEGHKIVGFHGKASELLHQFGVHVMPLTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Jasmonate inducible protein isolog
publication title Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 30
structure length 299
sequence length 299
ec nomenclature
pdb deposition date 2007-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2jz4A01
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2jz4A02
1TOQA 2BN0A 1C3MA 1JOTA 1X1VA 1J4UA 3LKYA 1KUJA 1WS5C 1VBPA 3VZFA 1OUWA 1WS5A 2NU5A 4MQ0A 4PIUA 1J4SA 5J50A 3LL1A 4GX7A 3LLYA 1UGYC 1UGYA 3VZEA 5J4TA 4PITA 3LLZA 5J4XA 3MIVA 1UH1A 2GUEA 3O44A 3LL0A 3R51A 3LL2A 2GTYA 3AQGA 3VZGA 1VBOA 3P8SA 3LM1A 1M26A 2GUXA 3WOBA 1XXRA 2HYQA 1XXQA 4R6OA 1KU8A 4R6PA 4R6QA 2HYRA 1UGWA 1C3KA 5EXGA 2BMZA 4AKDA 1JACA 1TP8A 5J51A 4AKBA 4PIFA 3VY7A 3R52A 4PIKA 4AKCA 5AV7A 4DDNA 4R6NA 5JM1A 1ZGRA 1UGWC 1ZGSA 1PXDA 2NUOA 2JZ4A 3WOCA 1C3NA 2GUDA 1J4TA 1XEZA 1WS4C 1WS4A 3MIUA 3VY6A 4WOGA 2BMYA 3MITA 1UGXA 1UH0A 4AK4A 2GUCA 5BN6E 3APAA 4R6RA 3R50A
chains in the Genus database with same CATH superfamily
1TOQA 2BN0A 1C3MA 4QX0A 4QX1A 1JOTA 1I5PA 1X1VA 1J4UA 3LKYA 1KUJA 1WS5C 3VZFA 1OUWA 1WS5A 2NU5A 4MQ0A 4PIUA 1J4SA 5J50A 3LL1A 4GX7A 3LLYA 1UGYC 1UGYA 3VZEA 5J4TA 4PITA 3LLZA 5J4XA 3MIVA 1UH1A 2QP2A 2GUEA 3O44A 3LL0A 1JI6A 3R51A 3LL2A 2GTYA 4MOAA 3AQGA 4QX2A 4ARYA 3VZGA 1VBOA 1VMOA 3P8SA 3LM1A 1M26A 2GUXA 3WOBA 1DLCA 1XXRA 2HYQA 1XXQA 4R6OA 1KU8A 4R6PA 4R6QA 2C9KA 2HYRA 1UGWA 1C3KA 5EXGA 2BMZA 4AKDA 1JACA 1TP8A 5J51A 4AKBA 4R6RA 4PIFA 3TOWA 3VY7A 3R52A 4PIKA 4AKCA 4W8JA 5AV7A 4DDNA 4R6NA 5JM1A 1ZGRA 1UGWC 1ZGSA 1PXDA 2NUOA 2JZ4A 3WOCA 4ARXA 4D8MA 1W99A 4QX3A 1C3NA 2GUDA 1J4TA 1XEZA 1WS4C 1WS4A 3MIUA 3VY6A 4WOGA 2BMYA 3MITA 1UGXA 1UH0A 4AK4A 2GUCA 5BN6E 3APAA 3EB7A 1VBPA 1CIYA 3R50A
chains in the Genus database with same CATH topology
1TOQA 2BN0A 1C3MA 1JOTA 1X1VA 1J4UA 3LKYA 1KUJA 1WS5C 1VBPA 3VZFA 1OUWA 1WS5A 2NU5A 4MQ0A 4PIUA 1J4SA 5J50A 3LL1A 4GX7A 3LLYA 1UGYC 1UGYA 3VZEA 5J4TA 4PITA 3LLZA 5J4XA 3MIVA 1UH1A 2GUEA 3O44A 3LL0A 3R51A 3LL2A 2GTYA 3AQGA 3VZGA 1VBOA 3P8SA 3LM1A 1M26A 2GUXA 3WOBA 1XXRA 2HYQA 1XXQA 4R6OA 1KU8A 4R6PA 4R6QA 2HYRA 1UGWA 1C3KA 5EXGA 2BMZA 4AKDA 1JACA 1TP8A 5J51A 4AKBA 4PIFA 3VY7A 3R52A 4PIKA 4AKCA 5AV7A 4DDNA 4R6NA 5JM1A 1ZGRA 1UGWC 1ZGSA 1PXDA 2NUOA 2JZ4A 3WOCA 1C3NA 2GUDA 1J4TA 1XEZA 1WS4C 1WS4A 3MIUA 3VY6A 4WOGA 2BMYA 3MITA 1UGXA 1UH0A 4AK4A 2GUCA 5BN6E 3APAA 4R6RA 3R50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TOQ A;  2BN0 A;  1C3M A;  1JOT A;  1X1V A;  1J4U A;  3LKY A;  1KUJ A;  1WS5 C;  1VBP A;  3VZF A;  1OUW A;  1WS5 A;  2NU5 A;  4MQ0 A;  4PIU A;  1J4S A;  5J50 A;  3LL1 A;  4GX7 A;  3LLY A;  1UGY C;  1UGY A;  3VZE A;  5J4T A;  4PIT A;  3LLZ A;  5J4X A;  3MIV A;  1UH1 A;  2GUE A;  3O44 A;  3LL0 A;  3R51 A;  3LL2 A;  2GTY A;  3AQG A;  3VZG A;  1VBO A;  3P8S A;  3LM1 A;  1M26 A;  2GUX A;  3WOB A;  1XXR A;  2HYQ A;  1XXQ A;  4R6O A;  1KU8 A;  4R6P A;  4R6Q A;  2HYR A;  1UGW A;  1C3K A;  5EXG A;  2BMZ A;  4AKD A;  1JAC A;  1TP8 A;  5J51 A;  4AKB A;  4PIF A;  3VY7 A;  3R52 A;  4PIK A;  4AKC A;  5AV7 A;  4DDN A;  4R6N A;  5JM1 A;  1ZGR A;  1UGW C;  1ZGS A;  1PXD A;  2NUO A;  2JZ4 A;  3WOC A;  1C3N A;  2GUD A;  1J4T A;  1XEZ A;  1WS4 C;  1WS4 A;  3MIU A;  3VY6 A;  4WOG A;  2BMY A;  3MIT A;  1UGX A;  1UH0 A;  4AK4 A;  2GUC A;  5BN6 E;  3APA A;  4R6R A;  3R50 A; 
#chains in the Genus database with same CATH topology
 1TOQ A;  2BN0 A;  1C3M A;  4QX0 A;  4QX1 A;  1JOT A;  1I5P A;  1X1V A;  1J4U A;  3LKY A;  1KUJ A;  1WS5 C;  3VZF A;  1OUW A;  1WS5 A;  2NU5 A;  4MQ0 A;  4PIU A;  1J4S A;  5J50 A;  3LL1 A;  4GX7 A;  3LLY A;  1UGY C;  1UGY A;  3VZE A;  5J4T A;  4PIT A;  3LLZ A;  5J4X A;  3MIV A;  1UH1 A;  2QP2 A;  2GUE A;  3O44 A;  3LL0 A;  1JI6 A;  3R51 A;  3LL2 A;  2GTY A;  4MOA A;  3AQG A;  4QX2 A;  4ARY A;  3VZG A;  1VBO A;  1VMO A;  3P8S A;  3LM1 A;  1M26 A;  2GUX A;  3WOB A;  1DLC A;  1XXR A;  2HYQ A;  1XXQ A;  4R6O A;  1KU8 A;  4R6P A;  4R6Q A;  2C9K A;  2HYR A;  1UGW A;  1C3K A;  5EXG A;  2BMZ A;  4AKD A;  1JAC A;  1TP8 A;  5J51 A;  4AKB A;  4R6R A;  4PIF A;  3TOW A;  3VY7 A;  3R52 A;  4PIK A;  4AKC A;  4W8J A;  5AV7 A;  4DDN A;  4R6N A;  5JM1 A;  1ZGR A;  1UGW C;  1ZGS A;  1PXD A;  2NUO A;  2JZ4 A;  3WOC A;  4ARX A;  4D8M A;  1W99 A;  4QX3 A;  1C3N A;  2GUD A;  1J4T A;  1XEZ A;  1WS4 C;  1WS4 A;  3MIU A;  3VY6 A;  4WOG A;  2BMY A;  3MIT A;  1UGX A;  1UH0 A;  4AK4 A;  2GUC A;  5BN6 E;  3APA A;  3EB7 A;  1VBP A;  1CIY A;  3R50 A; 
#chains in the Genus database with same CATH homology
 1TOQ A;  2BN0 A;  1C3M A;  1JOT A;  1X1V A;  1J4U A;  3LKY A;  1KUJ A;  1WS5 C;  1VBP A;  3VZF A;  1OUW A;  1WS5 A;  2NU5 A;  4MQ0 A;  4PIU A;  1J4S A;  5J50 A;  3LL1 A;  4GX7 A;  3LLY A;  1UGY C;  1UGY A;  3VZE A;  5J4T A;  4PIT A;  3LLZ A;  5J4X A;  3MIV A;  1UH1 A;  2GUE A;  3O44 A;  3LL0 A;  3R51 A;  3LL2 A;  2GTY A;  3AQG A;  3VZG A;  1VBO A;  3P8S A;  3LM1 A;  1M26 A;  2GUX A;  3WOB A;  1XXR A;  2HYQ A;  1XXQ A;  4R6O A;  1KU8 A;  4R6P A;  4R6Q A;  2HYR A;  1UGW A;  1C3K A;  5EXG A;  2BMZ A;  4AKD A;  1JAC A;  1TP8 A;  5J51 A;  4AKB A;  4PIF A;  3VY7 A;  3R52 A;  4PIK A;  4AKC A;  5AV7 A;  4DDN A;  4R6N A;  5JM1 A;  1ZGR A;  1UGW C;  1ZGS A;  1PXD A;  2NUO A;  2JZ4 A;  3WOC A;  1C3N A;  2GUD A;  1J4T A;  1XEZ A;  1WS4 C;  1WS4 A;  3MIU A;  3VY6 A;  4WOG A;  2BMY A;  3MIT A;  1UGX A;  1UH0 A;  4AK4 A;  2GUC A;  5BN6 E;  3APA A;  4R6R A;  3R50 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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