2JZFA

Nmr conformer closest to the mean coordinates of the domain 513-651 of the sars-cov nonstructural protein nsp3
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
143
structure length
143
Chain Sequence
GSHMVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Replicase polyprotein 1ab
publication title Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
pubmed doi rcsb
source organism Sars coronavirus
total genus 35
structure length 143
sequence length 143
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11633 SUD-M Single-stranded poly(A) binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2jzfA01
2JZFA 2KQVA 2RNKA 2WCTA 2JZEA 2W2GA 2JZDA
chains in the Genus database with same CATH superfamily
4KYBA 5D8NA 3KR4A 4ESSA 3PEIA 4UMLA 3EKEA 1ZR3A 3EWQA 4K0CA 1SPVA 1LCPA 1GYTA 2W2GA 2JZDA 3VFQA 3ETIA 2KQVA 1TY8A 5CBMA 3SIIA 2J9AA 2EEEA 2JZEA 2FG1A 1NJRA 3GQEA 4ZY0A 3Q6ZA 5HOLA 2WCTA 1VHUA 4ZX8A 4ZX9A 4K3NA 3IIFA 3SIHA 3H8FA 3GPGA 3SIGA 3Q71A 2AFCA 3GQOA 3SIJA 4ETJA 4ABLA 3JRUA 3EWRA 3EW5A 4ABKA 1BPMA 3KQZA 4R76A 4J5QA 3IIDA 5FSUA 1BLLE 5FSVA 5CMSA 2XD7A 4ZYQA 4ZY1A 5E3BA 4ETKA 4J4ZA 2VRIA 4GVVA 5AILA 4D86A 4R6TA 2JZFA 1YD9A 2FAVA 3KQXA 5CB5A 5CB3A 3IJ3A 4GVWA 4ZY2A 2RNKA 3EJFA 2EWBA 1ZR5A 3EWOA 3JZTA 3KZWA 2LGRA 4ZI6A 3GPQA 3GPOA 1LAMA 2ACFA 3V45A 4KSIA 3V2BA 5FSYA 4JGKA 3EJGA 4IQYA 4JLLA 3EWPA 3KR5A 4JVVA 4GUAA 4X2TA 4JCAA 1LANA 4J5RA 5FSXA 2BFQA 2FXKA 2X47A 1LAPA 3T8WA 5HIHA 2DX6A 1BPNA 3H8EA 5DUSA 1TXZA 3H8GA 1HJZA 2BFRA 2L8RA 5FSZA 4TU0A 4R7MA 4J5SA
chains in the Genus database with same CATH topology
2JZFA 2KQVA 2RNKA 2WCTA 2JZEA 2W2GA 2JZDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JZF A;  2KQV A;  2RNK A;  2WCT A;  2JZE A;  2W2G A;  2JZD A; 
#chains in the Genus database with same CATH topology
 4KYB A;  5D8N A;  3KR4 A;  4ESS A;  3PEI A;  4UML A;  3EKE A;  1ZR3 A;  3EWQ A;  4K0C A;  1SPV A;  1LCP A;  1GYT A;  2W2G A;  2JZD A;  3VFQ A;  3ETI A;  2KQV A;  1TY8 A;  5CBM A;  3SII A;  2J9A A;  2EEE A;  2JZE A;  2FG1 A;  1NJR A;  3GQE A;  4ZY0 A;  3Q6Z A;  5HOL A;  2WCT A;  1VHU A;  4ZX8 A;  4ZX9 A;  4K3N A;  3IIF A;  3SIH A;  3H8F A;  3GPG A;  3SIG A;  3Q71 A;  2AFC A;  3GQO A;  3SIJ A;  4ETJ A;  4ABL A;  3JRU A;  3EWR A;  3EW5 A;  4ABK A;  1BPM A;  3KQZ A;  4R76 A;  4J5Q A;  3IID A;  5FSU A;  1BLL E;  5FSV A;  5CMS A;  2XD7 A;  4ZYQ A;  4ZY1 A;  5E3B A;  4ETK A;  4J4Z A;  2VRI A;  4GVV A;  5AIL A;  4D86 A;  4R6T A;  2JZF A;  1YD9 A;  2FAV A;  3KQX A;  5CB5 A;  5CB3 A;  3IJ3 A;  4GVW A;  4ZY2 A;  2RNK A;  3EJF A;  2EWB A;  1ZR5 A;  3EWO A;  3JZT A;  3KZW A;  2LGR A;  4ZI6 A;  3GPQ A;  3GPO A;  1LAM A;  2ACF A;  3V45 A;  4KSI A;  3V2B A;  5FSY A;  4JGK A;  3EJG A;  4IQY A;  4JLL A;  3EWP A;  3KR5 A;  4JVV A;  4GUA A;  4X2T A;  4JCA A;  1LAN A;  4J5R A;  5FSX A;  2BFQ A;  2FXK A;  2X47 A;  1LAP A;  3T8W A;  5HIH A;  2DX6 A;  1BPN A;  3H8E A;  5DUS A;  1TXZ A;  3H8G A;  1HJZ A;  2BFR A;  2L8R A;  5FSZ A;  4TU0 A;  4R7M A;  4J5S A; 
#chains in the Genus database with same CATH homology
 2JZF A;  2KQV A;  2RNK A;  2WCT A;  2JZE A;  2W2G A;  2JZD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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