2K49A

Solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein SO_3888
publication title Solution NMR structure of UPF0339 protein SO3888 from Shewanella oneidensis.
rcsb
source organism Shewanella oneidensis
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2008-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k49A00
2K49A 2K8EA
chains in the Genus database with same CATH superfamily
2VSZA 2EC1A 3FEHA 3ULBA 2P0FA 1V5MA 1X11A 5M4YB 1U5DA 3OANA 5LONB 2KGXB 5C6RA 2D2QA 2KUQA 2YSZA 1UNPA 1Y5OA 2RNRB 4QJ4B 3VIAA 5L81A 2J0KA 4MT7A 1DYNA 2V76A 4IOYX 2L1CA 1WGQA 1P6SA 5D3WA 1K5GB 2P8VA 5CLQB 4ZRJA 5I2MA 5J3YA 5D3VA 2RVBB 3ODWA 1I2HA 3TO1A 1MPHA 2K2UA 5DHFB 2CODA 3NWAA 2FJUB 4F7UP 1X86A 1MKEA 4NSWA 4Z2MB 4GN1A 1V5PA 2KIEA 1XODA 2X18A 2ZPYA 2CAYA 3X23A 2ROZB 3TFMA 5J3TA 1EGXA 2J0MA 1MIXA 1W1GA 2YT1A 1FOEA 4EKUA 1U29A 1WJ1A 4HAUB 2EMTA 1KI1B 4WVFB 1Q67A 3SV1A 1QQGA 2R2YA 4B6HA 4CSQA 1UNRA 2QKMA 1J0WA 3KSYA 1BAKA 4KHBB 1XX0A 2LULA 4GOUA 3PSCA 3O96A 2D9WA 1FHXA 2COAA 4YONA 2H7EA 1P3RA 2DKPA 5HE1A 1GG3A 1TJ6A 5DHAB 4HB0B 1ZM0A 4HB4B 2I1JA 4CYEA 3NSUA 3M1IB 3ODOA 5C16A 4KHAA 2M14A 1H10A 4Y94A 2K8EA 2KIGA 3PP2A 5HE2A 1V89A 4A6KA 4TKNA 3T06A 1U5EA 4IFSA 2YT2A 5KQ1A 2GUMA 1DDWA 2Z4DA 4HB3B 3V5WA 4K81A 4GMVA 4HB2B 2YT0A 3KRXA 1V88A 2VRWB 4GXBA 3A8QA 2Y8FA 1XR0B 2E2XA 2M38A 3PVLA 4K17A 3QIJA 2D9YA 2LOZA 1MAIA 3ULCA 1H4RA 2K00A 1XCGA 3B77A 3MDBC 3WA0A 2I5CA 4HDOA 1OQNA 2DHKA 1MI1A 4D6WA 5C79A 2ADZA 3PVUA 4DX8A 4H8SA 3FSSA 2D9VA 2RUKB 3RCPA 4KVGB 1T77A 4GNKB 2Z59A 2I5FA 2IYBA 1M7RA 4TYZA 4KHBA 3VOQA 1ZC3B 2YRYA 4F7HA 2ZKMX 1ZC4B 2VKIA 4XWXA 2K2JA 2Y8GA 1ISNA 1DDVA 5D3XA 1ZVRA 3LJUX 5FI0A 2CY4A 1RJ2A 3MPXA 2KCJA 2GS0A 1FGZA 3ZVRA 3PVWA 1OY2A 5C5BB 4DXAB 1FHWA 1U5FA 2Z0QA 3D8DA 2Z0PA 4NY0A 1WJMA 3NW8A 3PEGA 4GMXB 4A6FA 1NU2A 1BWNA 2GCJA 4DBBA 5JHHA 3FVCA 4KHOA 3ML4A 1AQCA 5EFXA 3BINA 5JLJB 4KAXB 2H7DA 4K2OA 2FJLA 1TXDA 5KQ4A 2QKLA 3FM8C 2DHIA 1EAZA 3IVFA 1GC7A 1NTVA 1NI2A 2DN6A 1U27A 5LG4B 2KR0A 3DCXA 1UPRA 3G9WA 3KRWA 5HE3A 4K2PA 1FHOA 3SNHA 1WVHA 2RLOA 1X1FA 1V5UA 1W1DA 1M7EA 5CLLB 2RRFA 1ZYIA 2Y7BA 1XD4A 4L6EA 2N0YA 3U8ZA 3GYOA 2EJ8A 4OT1A 4PNKA 1EF1A 1PMSA 2HE7A 5J3QA 3BJIA 2YF0A 3AU4A 2UVMA 4CHJA 2MFQA 4HAXB 4BBKA 3TCAA 4HAWB 5KCVA 2YVCA 5FI1A 1UEFA 2LKOA 2ELAA 1QC6A 2L2IA 2DFKA 2MWNB 4WSFA 2R09A 2KUPA 3P7ZA 2W2XD 5GOWB 5JHGA 2DA0A 3AJ4A 5C5BA 3F5RA 1LW3A 2HTHB 4EJNA 2RGNB 3HIEA 4HAYB 2RSGA 2W2WA 2LG1A 4GPTB 2W2XC 5DIFB 1WGUA 1WI1A 1WG7A 2IFSA 3NWFA 2J0JA 2COCA 2MDXA 1UNQA 3QWMA 2Q13A 2ROVA 2LYDA 2OQBA 4F7GA 2DLWA 3F0WA 5DI9B 2P0DA 2COFA 3SUZA 3ODXA 3SYXA 2GCLA 2GJYA 1K5DB 3OHMB 3CIKA 2AEHA 5D3YA 4QXAB 1W1HA 1N3HA 1DDMA 2MKRA 2NMBA 4HSIA 1MK7B 2YS1A 4IAPA 4A6HA 2K49A 1AWEA 4HHVA 4ZRKA 4YL8A 4ZRIA 2D11A 4GZUA 2DHJA 2Z13A 3TW1A 3D8EA 1U5GA 2DKQA 3KZ1A 2DYNA 1PLSA 1BTNA 2JP2A 1RRPB 2P0HA 5D27A 1LB1A 4P7IA 1MK9B 2D9XA 5LOPB 1X1GA 3DXDA 4Z2NA 2PZ1A 3HW2B 4MY6A 1IRSA 3QBVB 2BCJA 1I7AA 1XKEA 3ZDTA 1PFJA 2DX5A 3D8FA 4MK0A 4DIXA 3DXCA 3NWDA 1B55A 2D9ZA 4C0AA 2NBVA 4A5KA 4HATB 3A98B 1FGYA 1TQZA 1KZGA 1P5TA 3HSAA 2DX1A 2J59M 1OMWA 2EMSA 2D4QA 1V61A 3A58A 3P6AA 1DBHA 2AL6A 1U2BA 4WJ7A 1FAOA 2UZRA 4CHMA 3PG7A 1EVHA 1NTYA 3PZDA 5JP4A 3U7DA 5I2SA 2R0DA 3UZTA 3U12A 1Y19B 2DYQA 3KY9A 2XQNM 1J19A 3SO6A 4QJ5B 3DXEA 4A6FB 4D0NB 2CRFA 3CXBB 1SHCA 3GYPA 2LOXA 2UZSA 4QJ3B 1E5WA 2G35A 2D10A 3HQCA 1SGHA 5DH9B 2Z0OA 5HE0A 1FB8A 4HAVB 3A8PA 4DX90 2Z14A 5IRSA 1X05A 4OSNA 2YS3A 3WYFB 1GC6A 2OTXA 3TVVA 2I1KA 1UPQA 2N23A 2ELBA 1Z87A 2CY5A 2DTCA 2NZ8B 1MIZB 3N7CA 1KZ7A 4PQ0A 1ZSQA 3AU5A 3HK0A 4HDQA 2YS5A 4HAZB 1BTKA 4L1RA 1DROA 4EMOA
chains in the Genus database with same CATH topology
3NWDA 2ZKMX 5I2MA 2NBVA 2GCLA 3U12A 2RRFA 1ZYIA 2YT2A 4IFSA 3TO1A 2Z14A 5IRSA 3NWAA 3OHMB 5I2SA 2FJUB 5M4YB 4D6WA 4OSNA 2GUMA 4QJ5B 3FSSA 4QXAB 2Z4DA 3NWFA 4Z2MB 3GYOA 3TVVA 4Z2NA 4HSIA 3TW1A 4OT1A 2KUQA 2R2YA 4CSQA 3A58A 4QJ4B 2K49A 2KIEA 3GYPA 4GNKB 4KHBB 4GOUA 2Z59A 3NW8A 5LG4B 2KR0A 4IOYX 2GCJA 4PQ0A 4QJ3B 3FVCA 4KHOA 4KHBA 3HIEA 4KHAA 2Z13A 4L1RA 2K8EA 2KIGA 4DIXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K49 A;  2K8E A; 
#chains in the Genus database with same CATH topology
 2VSZ A;  2EC1 A;  3FEH A;  3ULB A;  2P0F A;  1V5M A;  1X11 A;  5M4Y B;  1U5D A;  3OAN A;  5LON B;  2KGX B;  5C6R A;  2D2Q A;  2KUQ A;  2YSZ A;  1UNP A;  1Y5O A;  2RNR B;  4QJ4 B;  3VIA A;  5L81 A;  2J0K A;  4MT7 A;  1DYN A;  2V76 A;  4IOY X;  2L1C A;  1WGQ A;  1P6S A;  5D3W A;  1K5G B;  2P8V A;  5CLQ B;  4ZRJ A;  5I2M A;  5J3Y A;  5D3V A;  2RVB B;  3ODW A;  1I2H A;  3TO1 A;  1MPH A;  2K2U A;  5DHF B;  2COD A;  3NWA A;  2FJU B;  4F7U P;  1X86 A;  1MKE A;  4NSW A;  4Z2M B;  4GN1 A;  1V5P A;  2KIE A;  1XOD A;  2X18 A;  2ZPY A;  2CAY A;  3X23 A;  2ROZ B;  3TFM A;  5J3T A;  1EGX A;  2J0M A;  1MIX A;  1W1G A;  2YT1 A;  1FOE A;  4EKU A;  1U29 A;  1WJ1 A;  4HAU B;  2EMT A;  1KI1 B;  4WVF B;  1Q67 A;  3SV1 A;  1QQG A;  2R2Y A;  4B6H A;  4CSQ A;  1UNR A;  2QKM A;  1J0W A;  3KSY A;  1BAK A;  4KHB B;  1XX0 A;  2LUL A;  4GOU A;  3PSC A;  3O96 A;  2D9W A;  1FHX A;  2COA A;  4YON A;  2H7E A;  1P3R A;  2DKP A;  5HE1 A;  1GG3 A;  1TJ6 A;  5DHA B;  4HB0 B;  1ZM0 A;  4HB4 B;  2I1J A;  4CYE A;  3NSU A;  3M1I B;  3ODO A;  5C16 A;  4KHA A;  2M14 A;  1H10 A;  4Y94 A;  2K8E A;  2KIG A;  3PP2 A;  5HE2 A;  1V89 A;  4A6K A;  4TKN A;  3T06 A;  1U5E A;  4IFS A;  2YT2 A;  5KQ1 A;  2GUM A;  1DDW A;  2Z4D A;  4HB3 B;  3V5W A;  4K81 A;  4GMV A;  4HB2 B;  2YT0 A;  3KRX A;  1V88 A;  2VRW B;  4GXB A;  3A8Q A;  2Y8F A;  1XR0 B;  2E2X A;  2M38 A;  3PVL A;  4K17 A;  3QIJ A;  2D9Y A;  2LOZ A;  1MAI A;  3ULC A;  1H4R A;  2K00 A;  1XCG A;  3B77 A;  3MDB C;  3WA0 A;  2I5C A;  4HDO A;  1OQN A;  2DHK A;  1MI1 A;  4D6W A;  5C79 A;  2ADZ A;  3PVU A;  4DX8 A;  4H8S A;  3FSS A;  2D9V A;  2RUK B;  3RCP A;  4KVG B;  1T77 A;  4GNK B;  2Z59 A;  2I5F A;  2IYB A;  1M7R A;  4TYZ A;  4KHB A;  3VOQ A;  1ZC3 B;  2YRY A;  4F7H A;  2ZKM X;  1ZC4 B;  2VKI A;  4XWX A;  2K2J A;  2Y8G A;  1ISN A;  1DDV A;  5D3X A;  1ZVR A;  3LJU X;  5FI0 A;  2CY4 A;  1RJ2 A;  3MPX A;  2KCJ A;  2GS0 A;  1FGZ A;  3ZVR A;  3PVW A;  1OY2 A;  5C5B B;  4DXA B;  1FHW A;  1U5F A;  2Z0Q A;  3D8D A;  2Z0P A;  4NY0 A;  1WJM A;  3NW8 A;  3PEG A;  4GMX B;  4A6F A;  1NU2 A;  1BWN A;  2GCJ A;  4DBB A;  5JHH A;  3FVC A;  4KHO A;  3ML4 A;  1AQC A;  5EFX A;  3BIN A;  5JLJ B;  4KAX B;  2H7D A;  4K2O A;  2FJL A;  1TXD A;  5KQ4 A;  2QKL A;  3FM8 C;  2DHI A;  1EAZ A;  3IVF A;  1GC7 A;  1NTV A;  1NI2 A;  2DN6 A;  1U27 A;  5LG4 B;  2KR0 A;  3DCX A;  1UPR A;  3G9W A;  3KRW A;  5HE3 A;  4K2P A;  1FHO A;  3SNH A;  1WVH A;  2RLO A;  1X1F A;  1V5U A;  1W1D A;  1M7E A;  5CLL B;  2RRF A;  1ZYI A;  2Y7B A;  1XD4 A;  4L6E A;  2N0Y A;  3U8Z A;  3GYO A;  2EJ8 A;  4OT1 A;  4PNK A;  1EF1 A;  1PMS A;  2HE7 A;  5J3Q A;  3BJI A;  2YF0 A;  3AU4 A;  2UVM A;  4CHJ A;  2MFQ A;  4HAX B;  4BBK A;  3TCA A;  4HAW B;  5KCV A;  2YVC A;  5FI1 A;  1UEF A;  2LKO A;  2ELA A;  1QC6 A;  2L2I A;  2DFK A;  2MWN B;  4WSF A;  2R09 A;  2KUP A;  3P7Z A;  2W2X D;  5GOW B;  5JHG A;  2DA0 A;  3AJ4 A;  5C5B A;  3F5R A;  1LW3 A;  2HTH B;  4EJN A;  2RGN B;  3HIE A;  4HAY B;  2RSG A;  2W2W A;  2LG1 A;  4GPT B;  2W2X C;  5DIF B;  1WGU A;  1WI1 A;  1WG7 A;  2IFS A;  3NWF A;  2J0J A;  2COC A;  2MDX A;  1UNQ A;  3QWM A;  2Q13 A;  2ROV A;  2LYD A;  2OQB A;  4F7G A;  2DLW A;  3F0W A;  5DI9 B;  2P0D A;  2COF A;  3SUZ A;  3ODX A;  3SYX A;  2GCL A;  2GJY A;  1K5D B;  3OHM B;  3CIK A;  2AEH A;  5D3Y A;  4QXA B;  1W1H A;  1N3H A;  1DDM A;  2MKR A;  2NMB A;  4HSI A;  1MK7 B;  2YS1 A;  4IAP A;  4A6H A;  2K49 A;  1AWE A;  4HHV A;  4ZRK A;  4YL8 A;  4ZRI A;  2D11 A;  4GZU A;  2DHJ A;  2Z13 A;  3TW1 A;  3D8E A;  1U5G A;  2DKQ A;  3KZ1 A;  2DYN A;  1PLS A;  1BTN A;  2JP2 A;  1RRP B;  2P0H A;  5D27 A;  1LB1 A;  4P7I A;  1MK9 B;  2D9X A;  5LOP B;  1X1G A;  3DXD A;  4Z2N A;  2PZ1 A;  3HW2 B;  4MY6 A;  1IRS A;  3QBV B;  2BCJ A;  1I7A A;  1XKE A;  3ZDT A;  1PFJ A;  2DX5 A;  3D8F A;  4MK0 A;  4DIX A;  3DXC A;  3NWD A;  1B55 A;  2D9Z A;  4C0A A;  2NBV A;  4A5K A;  4HAT B;  3A98 B;  1FGY A;  1TQZ A;  1KZG A;  1P5T A;  3HSA A;  2DX1 A;  2J59 M;  1OMW A;  2EMS A;  2D4Q A;  1V61 A;  3A58 A;  3P6A A;  1DBH A;  2AL6 A;  1U2B A;  4WJ7 A;  1FAO A;  2UZR A;  4CHM A;  3PG7 A;  1EVH A;  1NTY A;  3PZD A;  5JP4 A;  3U7D A;  5I2S A;  2R0D A;  3UZT A;  3U12 A;  1Y19 B;  2DYQ A;  3KY9 A;  2XQN M;  1J19 A;  3SO6 A;  4QJ5 B;  3DXE A;  4A6F B;  4D0N B;  2CRF A;  3CXB B;  1SHC A;  3GYP A;  2LOX A;  2UZS A;  4QJ3 B;  1E5W A;  2G35 A;  2D10 A;  3HQC A;  1SGH A;  5DH9 B;  2Z0O A;  5HE0 A;  1FB8 A;  4HAV B;  3A8P A;  4DX9 0;  2Z14 A;  5IRS A;  1X05 A;  4OSN A;  2YS3 A;  3WYF B;  1GC6 A;  2OTX A;  3TVV A;  2I1K A;  1UPQ A;  2N23 A;  2ELB A;  1Z87 A;  2CY5 A;  2DTC A;  2NZ8 B;  1MIZ B;  3N7C A;  1KZ7 A;  4PQ0 A;  1ZSQ A;  3AU5 A;  3HK0 A;  4HDQ A;  2YS5 A;  4HAZ B;  1BTK A;  4L1R A;  1DRO A;  4EMO A; 
#chains in the Genus database with same CATH homology
 3NWD A;  2ZKM X;  5I2M A;  2NBV A;  2GCL A;  3U12 A;  2RRF A;  1ZYI A;  2YT2 A;  4IFS A;  3TO1 A;  2Z14 A;  5IRS A;  3NWA A;  3OHM B;  5I2S A;  2FJU B;  5M4Y B;  4D6W A;  4OSN A;  2GUM A;  4QJ5 B;  3FSS A;  4QXA B;  2Z4D A;  3NWF A;  4Z2M B;  3GYO A;  3TVV A;  4Z2N A;  4HSI A;  3TW1 A;  4OT1 A;  2KUQ A;  2R2Y A;  4CSQ A;  3A58 A;  4QJ4 B;  2K49 A;  2KIE A;  3GYP A;  4GNK B;  4KHB B;  4GOU A;  2Z59 A;  3NW8 A;  5LG4 B;  2KR0 A;  4IOY X;  2GCJ A;  4PQ0 A;  4QJ3 B;  3FVC A;  4KHO A;  4KHB A;  3HIE A;  4KHA A;  2Z13 A;  4L1R A;  2K8E A;  2KIG A;  4DIX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...