2K49A

Solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR structure of UPF0339 protein SO3888 from Shewanella oneidensis.
rcsb
source organism Shewanella oneidensis
molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein SO_3888
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2008-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k49A00
2K49A 2K8EA
chains in the Genus database with same CATH superfamily
1J19A 2KR0A 3ULCA 5I2SA 3F5RA 1B55A 3SNHA 3FSSA 2LG1A 2P0HA 2DYNA 3TVVA 4KHAA 1Z87A 1AWEA 4GNKB 3M1IB 1ZM0A 2MKRA 2CRFA 2KUQA 1Q67A 1W1GA 1UNPA 2KGXB 1NU2A 1H4RA 2DX5A 5DIFB 2MWNB 4HB0B 3NWFA 2XQNM 1KZ7A 3ZVRA 3PEGA 2N0YA 3NSUA 3A58A 5CLLB 1DBHA 3O96A 2L1CA 2LKOA 4HHVA 5D3VA 2GS0A 2X18A 2LOXA 2YS5A 4D6WA 3VIAA 1MI1A 2BCJA 2Y7BA 4NY0A 2EMSA 2GCLA 5IRSA 1XCGA 4P7IA 2R2YA 1ZC4B 1IRSA 3QIJA 5KQ1A 3NWDA 3G9WA 2D9YA 1UNQA 3BINA 1WI1A 3QBVB 2KIEA 1RJ2A 2LYDA 3DXDA 3OANA 3T06A 4Y94A 3PP2A 3WYFB 3ZDTA 3PVUA 1U27A 1DDWA 3OHMB 1OY2A 4ZRIA 3DXCA 2DHKA 2I1KA 2ZPYA 4HAXB 1XX0A 3TFMA 2LOZA 4WJ7A 5I2MA 1BTKA 2D2QA 2YS3A 2RRFA 1X1FA 2GCJA 3WA0A 3KSYA 1BWNA 5HE3A 2COAA 3D8DA 2COFA 2RLOA 3NW8A 2Z0OA 3A8PA 4CYEA 2H7EA 1X05A 1XR0B 3ODOA 3CXBB 4QJ4B 1GC7A 4HB2B 1LW3A 4H8SA 3VOQA 2W2XC 3IVFA 2K00A 4MK0A 2M38A 3PZDA 1XD4A 2Z13A 2I1JA 4DX8A 1P6SA 1UPRA 2CY4A 1U2BA 2IFSA 2R0DA 2AL6A 4DIXA 2DYQA 1MIXA 2NZ8B 1E5WA 1KI1B 2I5FA 3ULBA 5HE2A 2RNRB 5J3TA 2D9ZA 2D10A 5DHFB 2ELAA 1FGZA 2FJLA 3X23A 3KRWA 2GJYA 1WJ1A 3SV1A 2OTXA 4L6EA 4HDOA 3F0WA 1WVHA 3AU4A 2ADZA 3HSAA 1H10A 1K5GB 3MDBC 1FHOA 3TW1A 5HE0A 3MPXA 3U8ZA 2EMTA 3ODXA 1W1HA 4KHBB 1MKEA 5CLQB 4F7UP 5L81A 4KAXB 3LJUX 3UZTA 1MAIA 3GYOA 4HB3B 2ROVA 2DKPA 2Z59A 4OSNA 5KCVA 4WVFB 4IFSA 3HW2B 4NSWA 2KUPA 5DH9B 2OQBA 2RGNB 1FB8A 1LB1A 4HAVB 4GMXB 4Z2MB 2LULA 4GXBA 1EGXA 4QXAB 1PFJA 5DHAB 3TCAA 2UZSA 2K49A 5M4YB 2EJ8A 4TKNA 5D3XA 1FAOA 1J0WA 3AJ4A 1DDMA 2D9WA 1QC6A 2D9VA 2K8EA 2QKLA 5KQ4A 1WG7A 1TJ6A 5C16A 2VKIA 2GUMA 3PSCA 3PVWA 1M7RA 1V5UA 1TQZA 2FJUB 2J0KA 1U5FA 5LG4B 2NMBA 2Y8FA 2KIGA 4QJ3B 1MK9B 1X1GA 4K2PA 1UEFA 5FI1A 2QKMA 1WGQA 1I2HA 1DROA 2Q13A 2UZRA 4HAYB 1V5MA 5D3WA 3NWAA 1SHCA 2DKQA 2D11A 5JLJB 3PVLA 4A6FB 4HSIA 4A6KA 4DX90 2G35A 5FI0A 4EMOA 5D27A 4MT7A 3SO6A 4WSFA 2Z4DA 2YT1A 3SYXA 4PNKA 3CIKA 3DXEA 3B77A 4F7HA 4IOYX 3HK0A 1OMWA 1PMSA 3KZ1A 3DCXA 2E2XA 4KVGB 2DN6A 5DI9B 1U5GA 4HDQA 1U29A 3P7ZA 2P0DA 3FVCA 3ODWA 3HIEA 2YRYA 2IYBA 3AU5A 2COCA 3QWMA 2ELBA 1W1DA 3D8EA 5JHHA 1EF1A 2PZ1A 1DDVA 4IAPA 1N3HA 1RRPB 4KHOA 2HTHB 4GPTB 1FGYA 2Z14A 2MDXA 4GOUA 1BAKA 4ZRJA 4K17A 4PQ0A 3BJIA 5C5BB 4CHMA 1ZC3B 2NBVA 1U5DA 5JP4A 3GYPA 1NTVA 2DHIA 2I5CA 4EJNA 4F7GA 2YSZA 5LONB 2VSZA 2YVCA 2K2JA 4GZUA 2RVBB 1V89A 1X86A 4DXAB 4HATB 3A8QA 4CHJA 2YS1A 1EVHA 2DA0A 3U7DA 1XODA 4GN1A 4A6HA 3ML4A 2YF0A 2N23A 2YT2A 4HAUB 1QQGA 5J3YA 5JHGA 1P3RA 5J3QA 2Z0PA 2RUKB 1ISNA 1WGUA 1K5DB 1V88A 2K2UA 4MY6A 1ZVRA 2MFQA 1UNRA 1AQCA 4D0NB 3V5WA 2JP2A 1SGHA 1ZYIA 2DLWA 2M14A 3D8FA 2EC1A 5LOPB 2UVMA 1Y5OA 4ZRKA 4DBBA 5C6RA 3PG7A 2VRWB 4XWXA 3U12A 2Z0QA 4C0AA 4B6HA 5C79A 1GG3A 4QJ5B 1ZSQA 3FM8C 5HE1A 3HQCA 4YL8A 2D4QA 1V5PA 1TXDA 1T77A 2DHJA 1FHWA 1OQNA 3SUZA 4HAZB 2L2IA 1FOEA 2DFKA 1EAZA 3N7CA 5C5BA 1P5TA 4EKUA 1UPQA 2Y8GA 4GMVA 2P0FA 4A5KA 1XKEA 2D9XA 4CSQA 2J0MA 2CAYA 2DTCA 2ROZB 2RSGA 2KCJA 4K2OA 4BBKA 1V61A 4TYZA 3P6AA 3A98B 4YONA 2H7DA 4HAWB 2P8VA 1PLSA 2W2WA 2W2XD 2CY5A 1FHXA 1GC6A 1Y19B 2CODA 1NI2A 3KY9A 2V76A 1DYNA 2J0JA 2YT0A 4Z2NA 3FEHA 2ZKMX 1MK7B 4HB4B 2J59M 1X11A 2DX1A 3RCPA 2R09A 1BTNA 4KHBA 5EFXA 4L1RA 5D3YA 3TO1A 2HE7A 1MIZB 1U5EA 2AEHA 4K81A 1MPHA 1WJMA 5GOWB 3KRXA 1I7AA 4A6FA 1NTYA 1M7EA 1KZGA 4OT1A
chains in the Genus database with same CATH topology
2KUQA 4DIXA 3OHMB 3NW8A 3FVCA 3U12A 3HIEA 4KHBB 4Z2MB 2KR0A 4Z2NA 2ZKMX 2GCLA 5I2SA 2GUMA 4QXAB 5IRSA 2R2YA 2Z4DA 3NWFA 2K49A 5M4YB 2FJUB 4QJ4B 5LG4B 4QJ5B 3GYOA 5I2MA 4CSQA 3NWDA 3FSSA 4KHBA 4L1RA 4KHOA 3TVVA 2KIGA 2Z59A 4KHAA 4QJ3B 2KIEA 2RRFA 2GCJA 1ZYIA 2Z14A 4IOYX 4GOUA 4OSNA 3A58A 3TO1A 4GNKB 4IFSA 2Z13A 2YT2A 4PQ0A 3NWAA 4D6WA 2NBVA 3TW1A 3GYPA 4OT1A 2K8EA 4HSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K49 A;  2K8E A; 
#chains in the Genus database with same CATH topology
 1J19 A;  2KR0 A;  3ULC A;  5I2S A;  3F5R A;  1B55 A;  3SNH A;  3FSS A;  2LG1 A;  2P0H A;  2DYN A;  3TVV A;  4KHA A;  1Z87 A;  1AWE A;  4GNK B;  3M1I B;  1ZM0 A;  2MKR A;  2CRF A;  2KUQ A;  1Q67 A;  1W1G A;  1UNP A;  2KGX B;  1NU2 A;  1H4R A;  2DX5 A;  5DIF B;  2MWN B;  4HB0 B;  3NWF A;  2XQN M;  1KZ7 A;  3ZVR A;  3PEG A;  2N0Y A;  3NSU A;  3A58 A;  5CLL B;  1DBH A;  3O96 A;  2L1C A;  2LKO A;  4HHV A;  5D3V A;  2GS0 A;  2X18 A;  2LOX A;  2YS5 A;  4D6W A;  3VIA A;  1MI1 A;  2BCJ A;  2Y7B A;  4NY0 A;  2EMS A;  2GCL A;  5IRS A;  1XCG A;  4P7I A;  2R2Y A;  1ZC4 B;  1IRS A;  3QIJ A;  5KQ1 A;  3NWD A;  3G9W A;  2D9Y A;  1UNQ A;  3BIN A;  1WI1 A;  3QBV B;  2KIE A;  1RJ2 A;  2LYD A;  3DXD A;  3OAN A;  3T06 A;  4Y94 A;  3PP2 A;  3WYF B;  3ZDT A;  3PVU A;  1U27 A;  1DDW A;  3OHM B;  1OY2 A;  4ZRI A;  3DXC A;  2DHK A;  2I1K A;  2ZPY A;  4HAX B;  1XX0 A;  3TFM A;  2LOZ A;  4WJ7 A;  5I2M A;  1BTK A;  2D2Q A;  2YS3 A;  2RRF A;  1X1F A;  2GCJ A;  3WA0 A;  3KSY A;  1BWN A;  5HE3 A;  2COA A;  3D8D A;  2COF A;  2RLO A;  3NW8 A;  2Z0O A;  3A8P A;  4CYE A;  2H7E A;  1X05 A;  1XR0 B;  3ODO A;  3CXB B;  4QJ4 B;  1GC7 A;  4HB2 B;  1LW3 A;  4H8S A;  3VOQ A;  2W2X C;  3IVF A;  2K00 A;  4MK0 A;  2M38 A;  3PZD A;  1XD4 A;  2Z13 A;  2I1J A;  4DX8 A;  1P6S A;  1UPR A;  2CY4 A;  1U2B A;  2IFS A;  2R0D A;  2AL6 A;  4DIX A;  2DYQ A;  1MIX A;  2NZ8 B;  1E5W A;  1KI1 B;  2I5F A;  3ULB A;  5HE2 A;  2RNR B;  5J3T A;  2D9Z A;  2D10 A;  5DHF B;  2ELA A;  1FGZ A;  2FJL A;  3X23 A;  3KRW A;  2GJY A;  1WJ1 A;  3SV1 A;  2OTX A;  4L6E A;  4HDO A;  3F0W A;  1WVH A;  3AU4 A;  2ADZ A;  3HSA A;  1H10 A;  1K5G B;  3MDB C;  1FHO A;  3TW1 A;  5HE0 A;  3MPX A;  3U8Z A;  2EMT A;  3ODX A;  1W1H A;  4KHB B;  1MKE A;  5CLQ B;  4F7U P;  5L81 A;  4KAX B;  3LJU X;  3UZT A;  1MAI A;  3GYO A;  4HB3 B;  2ROV A;  2DKP A;  2Z59 A;  4OSN A;  5KCV A;  4WVF B;  4IFS A;  3HW2 B;  4NSW A;  2KUP A;  5DH9 B;  2OQB A;  2RGN B;  1FB8 A;  1LB1 A;  4HAV B;  4GMX B;  4Z2M B;  2LUL A;  4GXB A;  1EGX A;  4QXA B;  1PFJ A;  5DHA B;  3TCA A;  2UZS A;  2K49 A;  5M4Y B;  2EJ8 A;  4TKN A;  5D3X A;  1FAO A;  1J0W A;  3AJ4 A;  1DDM A;  2D9W A;  1QC6 A;  2D9V A;  2K8E A;  2QKL A;  5KQ4 A;  1WG7 A;  1TJ6 A;  5C16 A;  2VKI A;  2GUM A;  3PSC A;  3PVW A;  1M7R A;  1V5U A;  1TQZ A;  2FJU B;  2J0K A;  1U5F A;  5LG4 B;  2NMB A;  2Y8F A;  2KIG A;  4QJ3 B;  1MK9 B;  1X1G A;  4K2P A;  1UEF A;  5FI1 A;  2QKM A;  1WGQ A;  1I2H A;  1DRO A;  2Q13 A;  2UZR A;  4HAY B;  1V5M A;  5D3W A;  3NWA A;  1SHC A;  2DKQ A;  2D11 A;  5JLJ B;  3PVL A;  4A6F B;  4HSI A;  4A6K A;  4DX9 0;  2G35 A;  5FI0 A;  4EMO A;  5D27 A;  4MT7 A;  3SO6 A;  4WSF A;  2Z4D A;  2YT1 A;  3SYX A;  4PNK A;  3CIK A;  3DXE A;  3B77 A;  4F7H A;  4IOY X;  3HK0 A;  1OMW A;  1PMS A;  3KZ1 A;  3DCX A;  2E2X A;  4KVG B;  2DN6 A;  5DI9 B;  1U5G A;  4HDQ A;  1U29 A;  3P7Z A;  2P0D A;  3FVC A;  3ODW A;  3HIE A;  2YRY A;  2IYB A;  3AU5 A;  2COC A;  3QWM A;  2ELB A;  1W1D A;  3D8E A;  5JHH A;  1EF1 A;  2PZ1 A;  1DDV A;  4IAP A;  1N3H A;  1RRP B;  4KHO A;  2HTH B;  4GPT B;  1FGY A;  2Z14 A;  2MDX A;  4GOU A;  1BAK A;  4ZRJ A;  4K17 A;  4PQ0 A;  3BJI A;  5C5B B;  4CHM A;  1ZC3 B;  2NBV A;  1U5D A;  5JP4 A;  3GYP A;  1NTV A;  2DHI A;  2I5C A;  4EJN A;  4F7G A;  2YSZ A;  5LON B;  2VSZ A;  2YVC A;  2K2J A;  4GZU A;  2RVB B;  1V89 A;  1X86 A;  4DXA B;  4HAT B;  3A8Q A;  4CHJ A;  2YS1 A;  1EVH A;  2DA0 A;  3U7D A;  1XOD A;  4GN1 A;  4A6H A;  3ML4 A;  2YF0 A;  2N23 A;  2YT2 A;  4HAU B;  1QQG A;  5J3Y A;  5JHG A;  1P3R A;  5J3Q A;  2Z0P A;  2RUK B;  1ISN A;  1WGU A;  1K5D B;  1V88 A;  2K2U A;  4MY6 A;  1ZVR A;  2MFQ A;  1UNR A;  1AQC A;  4D0N B;  3V5W A;  2JP2 A;  1SGH A;  1ZYI A;  2DLW A;  2M14 A;  3D8F A;  2EC1 A;  5LOP B;  2UVM A;  1Y5O A;  4ZRK A;  4DBB A;  5C6R A;  3PG7 A;  2VRW B;  4XWX A;  3U12 A;  2Z0Q A;  4C0A A;  4B6H A;  5C79 A;  1GG3 A;  4QJ5 B;  1ZSQ A;  3FM8 C;  5HE1 A;  3HQC A;  4YL8 A;  2D4Q A;  1V5P A;  1TXD A;  1T77 A;  2DHJ A;  1FHW A;  1OQN A;  3SUZ A;  4HAZ B;  2L2I A;  1FOE A;  2DFK A;  1EAZ A;  3N7C A;  5C5B A;  1P5T A;  4EKU A;  1UPQ A;  2Y8G A;  4GMV A;  2P0F A;  4A5K A;  1XKE A;  2D9X A;  4CSQ A;  2J0M A;  2CAY A;  2DTC A;  2ROZ B;  2RSG A;  2KCJ A;  4K2O A;  4BBK A;  1V61 A;  4TYZ A;  3P6A A;  3A98 B;  4YON A;  2H7D A;  4HAW B;  2P8V A;  1PLS A;  2W2W A;  2W2X D;  2CY5 A;  1FHX A;  1GC6 A;  1Y19 B;  2COD A;  1NI2 A;  3KY9 A;  2V76 A;  1DYN A;  2J0J A;  2YT0 A;  4Z2N A;  3FEH A;  2ZKM X;  1MK7 B;  4HB4 B;  2J59 M;  1X11 A;  2DX1 A;  3RCP A;  2R09 A;  1BTN A;  4KHB A;  5EFX A;  4L1R A;  5D3Y A;  3TO1 A;  2HE7 A;  1MIZ B;  1U5E A;  2AEH A;  4K81 A;  1MPH A;  1WJM A;  5GOW B;  3KRX A;  1I7A A;  4A6F A;  1NTY A;  1M7E A;  1KZG A;  4OT1 A; 
#chains in the Genus database with same CATH homology
 2KUQ A;  4DIX A;  3OHM B;  3NW8 A;  3FVC A;  3U12 A;  3HIE A;  4KHB B;  4Z2M B;  2KR0 A;  4Z2N A;  2ZKM X;  2GCL A;  5I2S A;  2GUM A;  4QXA B;  5IRS A;  2R2Y A;  2Z4D A;  3NWF A;  2K49 A;  5M4Y B;  2FJU B;  4QJ4 B;  5LG4 B;  4QJ5 B;  3GYO A;  5I2M A;  4CSQ A;  3NWD A;  3FSS A;  4KHB A;  4L1R A;  4KHO A;  3TVV A;  2KIG A;  2Z59 A;  4KHA A;  4QJ3 B;  2KIE A;  2RRF A;  2GCJ A;  1ZYI A;  2Z14 A;  4IOY X;  4GOU A;  4OSN A;  3A58 A;  3TO1 A;  4GNK B;  4IFS A;  2Z13 A;  2YT2 A;  4PQ0 A;  3NWA A;  4D6W A;  2NBV A;  3TW1 A;  3GYP A;  4OT1 A;  2K8E A;  4HSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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