2K49A

Solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UPF0339 protein SO_3888
publication title Solution NMR structure of UPF0339 protein SO3888 from Shewanella oneidensis.
rcsb
source organism Shewanella oneidensis
molecule tags Structural genomics, unknown function
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2008-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k49A00
2K8EA 2K49A
chains in the Genus database with same CATH superfamily
2J0KA 3U8ZA 3KRWA 2MWNB 2ELBA 5KQ1A 4DBBA 5FI0A 1PLSA 1ZSQA 4HB4B 3P7ZA 5LOPB 4HB2B 3A98B 2OTXA 4KVGB 2JP2A 3FM8C 3ZDTA 1IRSA 1ZC3B 1KI1B 3ULCA 3A8QA 2DLWA 5J3YA 2YVCA 4Z2MB 4XWXA 2K8EA 4CHMA 2Y8FA 3UZTA 2KUQA 4K81A 2J0JA 4WJ7A 2E2XA 2KCJA 2KGXB 2H7DA 2DKPA 1U5GA 1UPQA 2P0DA 3MDBC 1DDWA 1WGQA 2LYDA 1PMSA 4F7GA 4QXAB 2NZ8B 4OT1A 4HB3B 3PZDA 5DI9B 5C6RA 1QQGA 2Z13A 5M4YB 1OY2A 2DHIA 1WVHA 3GYPA 4HAZB 2CY4A 1RJ2A 1DDVA 1K5DB 5JHGA 3X23A 1V88A 3AJ4A 3IVFA 3NWAA 4TKNA 3PP2A 4K2OA 4EKUA 3TCAA 2RGNB 1ZC4B 3PVUA 2L2IA 3QWMA 1MPHA 5LG4B 2DA0A 3AU4A 2K2UA 2I1JA 1OMWA 2Y8GA 2COFA 1MKEA 3PVLA 3HQCA 1FGYA 1UNPA 1GG3A 1LW3A 1I2HA 2IFSA 2H7EA 1K5GB 4PNKA 1U5DA 2KUPA 1N3HA 3G9WA 1WG7A 4MY6A 5I2SA 1TXDA 5FI1A 3WA0A 1WGUA 1X11A 3SYXA 4CSQA 3NSUA 4GNKB 2NBVA 3F0WA 5J3TA 2YT1A 1ISNA 3QBVB 1WI1A 3KRXA 1T77A 3V5WA 1XR0B 2YRYA 4A6FB 1BTNA 2N0YA 1EF1A 1H4RA 2D9XA 2UZSA 4D6WA 1J19A 4HAXB 3PG7A 5HE2A 2DX5A 2YT0A 1RRPB 4KHOA 4ZRIA 2PZ1A 5DHFB 3U12A 1TJ6A 4CYEA 2DFKA 3SV1A 1ZM0A 5HE0A 2AEHA 4A6HA 2GUMA 3HIEA 4HAWB 2Q13A 1DYNA 2D9VA 2ELAA 1QC6A 3NW8A 5D27A 2DN6A 2Z14A 5D3YA 2BCJA 3D8EA 1Q67A 4EMOA 4HHVA 2MFQA 5D3WA 1U27A 3ULBA 4HDOA 1WJMA 3MPXA 3RCPA 4NSWA 4CHJA 2EMTA 3P6AA 1J0WA 1V61A 1V5MA 1H10A 1V5UA 3SO6A 4DXAB 2XQNM 3A8PA 2EJ8A 1M7EA 4HAUB 4KAXB 3ODWA 5GOWB 2HE7A 1EGXA 3SUZA 2GS0A 4Z2NA 1XX0A 4GPTB 4WVFB 4YL8A 2P0HA 2CODA 1SGHA 1FOEA 3QIJA 3PVWA 3DXCA 5L81A 1NTYA 3VOQA 5EFXA 2QKLA 3U7DA 3TO1A 2LOXA 2I5FA 2YT2A 3HSAA 2AL6A 2GJYA 2COCA 2P0FA 4HSIA 3DXDA 5C5BA 5I2MA 2UZRA 1AWEA 1V5PA 3N7CA 1PFJA 3KZ1A 2NMBA 4BBKA 2GCLA 5JP4A 2RRFA 4GXBA 1UEFA 1V89A 4DX90 2QKMA 3NWDA 1MK9B 3CXBB 5C16A 2Z59A 2Z0PA 3GYOA 3ODXA 2K2JA 2Z0OA 4H8SA 4QJ4B 2P8VA 4EJNA 3AU5A 2YS1A 1EVHA 2W2WA 2V76A 4A5KA 2W2XC 2G35A 2ROVA 1FHOA 5D3XA 3BJIA 1XD4A 1KZ7A 1Y19B 2VSZA 2KIEA 2Z0QA 2D9YA 4A6KA 4F7UP 4OSNA 4GMVA 4P7IA 2KIGA 1KZGA 5KCVA 4QJ5B 4D0NB 1NI2A 5KQ4A 5C5BB 5CLLB 1Z87A 4F7HA 1MK7B 3PSCA 1MAIA 2I5CA 1MIXA 4L1RA 5HE3A 2OQBA 2ZKMX 1FHWA 2DYNA 2RNRB 4DIXA 4GZUA 1XCGA 3FVCA 4HATB 4GOUA 2CAYA 1W1HA 1U2BA 5DHAB 3TW1A 3PEGA 1EAZA 2LULA 1BAKA 1NU2A 1MI1A 1UPRA 2M38A 3ODOA 3OHMB 2YSZA 4HAYB 5DIFB 4QJ3B 3CIKA 2GCJA 2LG1A 3KY9A 1U5FA 5JLJB 1P3RA 4K17A 1NTVA 2LOZA 2YS5A 2J0MA 1ZVRA 3DCXA 3WYFB 4ZRKA 1DDMA 2R09A 2FJLA 1U29A 2K00A 4MT7A 2YF0A 1BTKA 2MDXA 3D8DA 1U5EA 2UVMA 1GC6A 2I1KA 5J3QA 1MIZB 1BWNA 4HDQA 2EC1A 3SNHA 1W1GA 2DHKA 3HW2B 1DBHA 4WSFA 3BINA 2K49A 1DROA 2RLOA 2DKQA 3VIAA 5D3VA 1XODA 2J59M 1LB1A 2N23A 1X05A 1E5WA 1M7RA 3TVVA 2CRFA 2VKIA 4IFSA 2D9ZA 3ML4A 1UNQA 1W1DA 1SHCA 1FHXA 3NWFA 2DYQA 4C0AA 4DX8A 4PQ0A 1FAOA 5HE1A 3LJUX 2W2XD 2Y7BA 2COAA 4ZRJA 2MKRA 2ADZA 4A6FA 2YS3A 2Z4DA 1FB8A 3KSYA 3OANA 3A58A 5C79A 5IRSA 2ZPYA 3FEHA 3O96A 2RSGA 3HK0A 4IAPA 2DTCA 2D9WA 4TYZA 1TQZA 4KHBA 4GMXB 4Y94A 2EMSA 3T06A 5LONB 1X1GA 1OQNA 2CY5A 2ROZB 2HTHB 4K2PA 4B6HA 1XKEA 1P5TA 1X1FA 4NY0A 1I7AA 5CLQB 1X86A 2M14A 4IOYX 2R0DA 3DXEA 3M1IB 2D4QA 1P6SA 1WJ1A 2RUKB 1ZYIA 1AQCA 5JHHA 2KR0A 2FJUB 2L1CA 2DX1A 3ZVRA 3D8FA 3B77A 4GN1A 1GC7A 3F5RA 3FSSA 2D10A 2X18A 2DHJA 4MK0A 1UNRA 2D11A 4YONA 4HB0B 4KHAA 3TFMA 2D2QA 2LKOA 2VRWB 5DH9B 2R2YA 2RVBB 4KHBB 4HAVB 1FGZA 4L6EA 1B55A 2IYBA 1Y5OA
chains in the Genus database with same CATH topology
4KHBA 2K8EA 2KR0A 2Z13A 3OHMB 5I2MA 2FJUB 3NW8A 5M4YB 2Z14A 2KUQA 3GYPA 2GCLA 4L1RA 3TVVA 2Z4DA 2ZKMX 4D6WA 4Z2NA 2RRFA 4QJ3B 2GCJA 3FSSA 3A58A 4IFSA 4DIXA 3NWFA 4KHOA 5IRSA 4IOYX 3NWDA 3NWAA 3FVCA 2KIEA 4KHAA 4PQ0A 4GOUA 4HSIA 2Z59A 4OSNA 5I2SA 3U12A 3GYOA 2KIGA 3TW1A 4QJ5B 2R2YA 4CSQA 2K49A 4GNKB 2NBVA 4KHBB 3TO1A 1ZYIA 2GUMA 3HIEA 4QJ4B 5LG4B 4QXAB 4OT1A 2YT2A 4Z2MB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K8E A;  2K49 A; 
#chains in the Genus database with same CATH topology
 2J0K A;  3U8Z A;  3KRW A;  2MWN B;  2ELB A;  5KQ1 A;  4DBB A;  5FI0 A;  1PLS A;  1ZSQ A;  4HB4 B;  3P7Z A;  5LOP B;  4HB2 B;  3A98 B;  2OTX A;  4KVG B;  2JP2 A;  3FM8 C;  3ZDT A;  1IRS A;  1ZC3 B;  1KI1 B;  3ULC A;  3A8Q A;  2DLW A;  5J3Y A;  2YVC A;  4Z2M B;  4XWX A;  2K8E A;  4CHM A;  2Y8F A;  3UZT A;  2KUQ A;  4K81 A;  2J0J A;  4WJ7 A;  2E2X A;  2KCJ A;  2KGX B;  2H7D A;  2DKP A;  1U5G A;  1UPQ A;  2P0D A;  3MDB C;  1DDW A;  1WGQ A;  2LYD A;  1PMS A;  4F7G A;  4QXA B;  2NZ8 B;  4OT1 A;  4HB3 B;  3PZD A;  5DI9 B;  5C6R A;  1QQG A;  2Z13 A;  5M4Y B;  1OY2 A;  2DHI A;  1WVH A;  3GYP A;  4HAZ B;  2CY4 A;  1RJ2 A;  1DDV A;  1K5D B;  5JHG A;  3X23 A;  1V88 A;  3AJ4 A;  3IVF A;  3NWA A;  4TKN A;  3PP2 A;  4K2O A;  4EKU A;  3TCA A;  2RGN B;  1ZC4 B;  3PVU A;  2L2I A;  3QWM A;  1MPH A;  5LG4 B;  2DA0 A;  3AU4 A;  2K2U A;  2I1J A;  1OMW A;  2Y8G A;  2COF A;  1MKE A;  3PVL A;  3HQC A;  1FGY A;  1UNP A;  1GG3 A;  1LW3 A;  1I2H A;  2IFS A;  2H7E A;  1K5G B;  4PNK A;  1U5D A;  2KUP A;  1N3H A;  3G9W A;  1WG7 A;  4MY6 A;  5I2S A;  1TXD A;  5FI1 A;  3WA0 A;  1WGU A;  1X11 A;  3SYX A;  4CSQ A;  3NSU A;  4GNK B;  2NBV A;  3F0W A;  5J3T A;  2YT1 A;  1ISN A;  3QBV B;  1WI1 A;  3KRX A;  1T77 A;  3V5W A;  1XR0 B;  2YRY A;  4A6F B;  1BTN A;  2N0Y A;  1EF1 A;  1H4R A;  2D9X A;  2UZS A;  4D6W A;  1J19 A;  4HAX B;  3PG7 A;  5HE2 A;  2DX5 A;  2YT0 A;  1RRP B;  4KHO A;  4ZRI A;  2PZ1 A;  5DHF B;  3U12 A;  1TJ6 A;  4CYE A;  2DFK A;  3SV1 A;  1ZM0 A;  5HE0 A;  2AEH A;  4A6H A;  2GUM A;  3HIE A;  4HAW B;  2Q13 A;  1DYN A;  2D9V A;  2ELA A;  1QC6 A;  3NW8 A;  5D27 A;  2DN6 A;  2Z14 A;  5D3Y A;  2BCJ A;  3D8E A;  1Q67 A;  4EMO A;  4HHV A;  2MFQ A;  5D3W A;  1U27 A;  3ULB A;  4HDO A;  1WJM A;  3MPX A;  3RCP A;  4NSW A;  4CHJ A;  2EMT A;  3P6A A;  1J0W A;  1V61 A;  1V5M A;  1H10 A;  1V5U A;  3SO6 A;  4DXA B;  2XQN M;  3A8P A;  2EJ8 A;  1M7E A;  4HAU B;  4KAX B;  3ODW A;  5GOW B;  2HE7 A;  1EGX A;  3SUZ A;  2GS0 A;  4Z2N A;  1XX0 A;  4GPT B;  4WVF B;  4YL8 A;  2P0H A;  2COD A;  1SGH A;  1FOE A;  3QIJ A;  3PVW A;  3DXC A;  5L81 A;  1NTY A;  3VOQ A;  5EFX A;  2QKL A;  3U7D A;  3TO1 A;  2LOX A;  2I5F A;  2YT2 A;  3HSA A;  2AL6 A;  2GJY A;  2COC A;  2P0F A;  4HSI A;  3DXD A;  5C5B A;  5I2M A;  2UZR A;  1AWE A;  1V5P A;  3N7C A;  1PFJ A;  3KZ1 A;  2NMB A;  4BBK A;  2GCL A;  5JP4 A;  2RRF A;  4GXB A;  1UEF A;  1V89 A;  4DX9 0;  2QKM A;  3NWD A;  1MK9 B;  3CXB B;  5C16 A;  2Z59 A;  2Z0P A;  3GYO A;  3ODX A;  2K2J A;  2Z0O A;  4H8S A;  4QJ4 B;  2P8V A;  4EJN A;  3AU5 A;  2YS1 A;  1EVH A;  2W2W A;  2V76 A;  4A5K A;  2W2X C;  2G35 A;  2ROV A;  1FHO A;  5D3X A;  3BJI A;  1XD4 A;  1KZ7 A;  1Y19 B;  2VSZ A;  2KIE A;  2Z0Q A;  2D9Y A;  4A6K A;  4F7U P;  4OSN A;  4GMV A;  4P7I A;  2KIG A;  1KZG A;  5KCV A;  4QJ5 B;  4D0N B;  1NI2 A;  5KQ4 A;  5C5B B;  5CLL B;  1Z87 A;  4F7H A;  1MK7 B;  3PSC A;  1MAI A;  2I5C A;  1MIX A;  4L1R A;  5HE3 A;  2OQB A;  2ZKM X;  1FHW A;  2DYN A;  2RNR B;  4DIX A;  4GZU A;  1XCG A;  3FVC A;  4HAT B;  4GOU A;  2CAY A;  1W1H A;  1U2B A;  5DHA B;  3TW1 A;  3PEG A;  1EAZ A;  2LUL A;  1BAK A;  1NU2 A;  1MI1 A;  1UPR A;  2M38 A;  3ODO A;  3OHM B;  2YSZ A;  4HAY B;  5DIF B;  4QJ3 B;  3CIK A;  2GCJ A;  2LG1 A;  3KY9 A;  1U5F A;  5JLJ B;  1P3R A;  4K17 A;  1NTV A;  2LOZ A;  2YS5 A;  2J0M A;  1ZVR A;  3DCX A;  3WYF B;  4ZRK A;  1DDM A;  2R09 A;  2FJL A;  1U29 A;  2K00 A;  4MT7 A;  2YF0 A;  1BTK A;  2MDX A;  3D8D A;  1U5E A;  2UVM A;  1GC6 A;  2I1K A;  5J3Q A;  1MIZ B;  1BWN A;  4HDQ A;  2EC1 A;  3SNH A;  1W1G A;  2DHK A;  3HW2 B;  1DBH A;  4WSF A;  3BIN A;  2K49 A;  1DRO A;  2RLO A;  2DKQ A;  3VIA A;  5D3V A;  1XOD A;  2J59 M;  1LB1 A;  2N23 A;  1X05 A;  1E5W A;  1M7R A;  3TVV A;  2CRF A;  2VKI A;  4IFS A;  2D9Z A;  3ML4 A;  1UNQ A;  1W1D A;  1SHC A;  1FHX A;  3NWF A;  2DYQ A;  4C0A A;  4DX8 A;  4PQ0 A;  1FAO A;  5HE1 A;  3LJU X;  2W2X D;  2Y7B A;  2COA A;  4ZRJ A;  2MKR A;  2ADZ A;  4A6F A;  2YS3 A;  2Z4D A;  1FB8 A;  3KSY A;  3OAN A;  3A58 A;  5C79 A;  5IRS A;  2ZPY A;  3FEH A;  3O96 A;  2RSG A;  3HK0 A;  4IAP A;  2DTC A;  2D9W A;  4TYZ A;  1TQZ A;  4KHB A;  4GMX B;  4Y94 A;  2EMS A;  3T06 A;  5LON B;  1X1G A;  1OQN A;  2CY5 A;  2ROZ B;  2HTH B;  4K2P A;  4B6H A;  1XKE A;  1P5T A;  1X1F A;  4NY0 A;  1I7A A;  5CLQ B;  1X86 A;  2M14 A;  4IOY X;  2R0D A;  3DXE A;  3M1I B;  2D4Q A;  1P6S A;  1WJ1 A;  2RUK B;  1ZYI A;  1AQC A;  5JHH A;  2KR0 A;  2FJU B;  2L1C A;  2DX1 A;  3ZVR A;  3D8F A;  3B77 A;  4GN1 A;  1GC7 A;  3F5R A;  3FSS A;  2D10 A;  2X18 A;  2DHJ A;  4MK0 A;  1UNR A;  2D11 A;  4YON A;  4HB0 B;  4KHA A;  3TFM A;  2D2Q A;  2LKO A;  2VRW B;  5DH9 B;  2R2Y A;  2RVB B;  4KHB B;  4HAV B;  1FGZ A;  4L6E A;  1B55 A;  2IYB A;  1Y5O A; 
#chains in the Genus database with same CATH homology
 4KHB A;  2K8E A;  2KR0 A;  2Z13 A;  3OHM B;  5I2M A;  2FJU B;  3NW8 A;  5M4Y B;  2Z14 A;  2KUQ A;  3GYP A;  2GCL A;  4L1R A;  3TVV A;  2Z4D A;  2ZKM X;  4D6W A;  4Z2N A;  2RRF A;  4QJ3 B;  2GCJ A;  3FSS A;  3A58 A;  4IFS A;  4DIX A;  3NWF A;  4KHO A;  5IRS A;  4IOY X;  3NWD A;  3NWA A;  3FVC A;  2KIE A;  4KHA A;  4PQ0 A;  4GOU A;  4HSI A;  2Z59 A;  4OSN A;  5I2S A;  3U12 A;  3GYO A;  2KIG A;  3TW1 A;  4QJ5 B;  2R2Y A;  4CSQ A;  2K49 A;  4GNK B;  2NBV A;  4KHB B;  3TO1 A;  1ZYI A;  2GUM A;  3HIE A;  4QJ4 B;  5LG4 B;  4QXA B;  4OT1 A;  2YT2 A;  4Z2M B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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