2K49A

Solution nmr structure of upf0339 protein so3888 from shewanella oneidensis. northeast structural genomics consortium target sor190
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
118
structure length
118
Chain Sequence
MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR structure of UPF0339 protein SO3888 from Shewanella oneidensis.
rcsb
source organism Shewanella oneidensis
molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein SO_3888
total genus 32
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2008-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k49A00
2K49A 2K8EA
chains in the Genus database with same CATH superfamily
1QQGA 1ZC4B 2VRWB 2QKMA 2YRYA 5HE2A 5DH9B 1OY2A 3SYXA 2GS0A 5JHGA 2Y8FA 1FHXA 1FGYA 2V76A 4KHBA 3FVCA 2GCLA 4QJ5B 3NWAA 4A6HA 1FAOA 3FEHA 2W2WA 1FGZA 4HAWB 2UVMA 3FM8C 2Z14A 1WGUA 1X1GA 5LOPB 1BTNA 2K00A 2M38A 2W2XC 1N3HA 2CAYA 4DX8A 3NSUA 4K2PA 3DXCA 3HSAA 4QJ3B 3QBVB 2D9ZA 4GMXB 4F7GA 5D27A 1MI1A 5KQ1A 2KR0A 4L6EA 1Q67A 1ZVRA 5D3XA 2ZPYA 1X11A 3HK0A 1X86A 1FB8A 4D0NB 4ZRJA 4DX90 2DX1A 5IRSA 2KUPA 2LOXA 2X18A 5GOWB 4HB3B 2P0DA 3PVLA 4QXAB 4KHBB 2K8EA 4Z2NA 4CYEA 2ADZA 3KRXA 2EJ8A 1ZSQA 4EJNA 2M14A 5C79A 3G9WA 2Q13A 3GYOA 3P6AA 1AWEA 1SHCA 3CIKA 1PFJA 2YS1A 4WVFB 2ELBA 2W2XD 4QJ4B 3F0WA 2N0YA 4PQ0A 1U27A 1UPRA 1UNRA 4YL8A 2FJLA 5JLJB 4D6WA 5KQ4A 2YS5A 1IRSA 3PP2A 3ODWA 5JHHA 2DN6A 2DKQA 4DXAB 2MWNB 1WGQA 5J3YA 3PVUA 2LULA 3PZDA 2RUKB 3A98B 2P8VA 1EGXA 2GCJA 1I2HA 4F7HA 4HAXB 2KUQA 4MT7A 3CXBB 2COCA 4OT1A 4WSFA 5I2SA 2EMTA 3ZVRA 5HE1A 3PSCA 1KI1B 2DYQA 3KSYA 3QIJA 3SO6A 1V89A 1XODA 3AU5A 1DBHA 2CY4A 2J0MA 5HE3A 3RCPA 3OHMB 1NU2A 1NTVA 1U2BA 4YONA 2DTCA 1XCGA 5JP4A 2KGXB 3ULCA 1ISNA 2NZ8B 2I1KA 5C16A 3O96A 3BINA 4CHJA 1QC6A 2QKLA 4HHVA 3GYPA 2DA0A 2G35A 2K2JA 5C6RA 1MAIA 4ZRKA 5HE0A 1WG7A 3DXDA 1I7AA 1UPQA 1M7EA 4TKNA 4B6HA 1OMWA 3PG7A 2UZSA 2R0DA 2Z59A 4GXBA 1BWNA 2MKRA 5J3QA 2VKIA 4GOUA 3TCAA 2ROVA 3TVVA 4WJ7A 2D2QA 3HQCA 2IFSA 1P5TA 3M1IB 2LG1A 1MK7B 2DFKA 5M4YB 1B55A 4A6KA 5KCVA 2JP2A 1W1HA 1XX0A 2COAA 1MK9B 2GJYA 1M7RA 4GNKB 2KIEA 4A6FA 4GZUA 2DHIA 3B77A 1SGHA 1LW3A 1KZGA 3NWDA 1J0WA 1U5DA 3D8FA 2YVCA 1EVHA 1FHOA 3WA0A 3PEGA 1DDWA 2NMBA 2RLOA 2RSGA 3V5WA 1BTKA 2I5CA 1UEFA 2DYNA 4GN1A 2ZKMX 2H7EA 1DDVA 4KVGB 3PVWA 3KRWA 2K49A 1U5GA 2E2XA 3SNHA 4HAZB 3A8PA 4Z2MB 4A5KA 4HB0B 2D11A 2D4QA 1NTYA 5J3TA 4XWXA 1MIZB 1V88A 2BCJA 3NWFA 4KHOA 2R2YA 1Y5OA 2EMSA 3AU4A 2LOZA 3A8QA 1K5GB 1GC6A 2DLWA 1T77A 1P3RA 4IFSA 3D8DA 4GPTB 1AQCA 2DHJA 1V5PA 2H7DA 2D9XA 2YSZA 3D8EA 2KCJA 2P0FA 1UNPA 2XQNM 1TQZA 1FOEA 2YS3A 2MFQA 2VSZA 4EMOA 2R09A 1MPHA 1FHWA 1PLSA 4H8SA 5FI1A 1OQNA 5LG4B 4K81A 1H4RA 4KHAA 1U5EA 4A6FB 1H10A 1ZC3B 2AEHA 2NBVA 2DHKA 1V5UA 2Z13A 2RVBB 2CRFA 4IOYX 3U7DA 5C5BB 4IAPA 1U29A 3N7CA 1RJ2A 3A58A 3U12A 2CODA 5DHAB 1J19A 2L1CA 1U5FA 2GUMA 2ELAA 4HB2B 2HTHB 4OSNA 1WVHA 1RRPB 2EC1A 4GMVA 4EKUA 4P7IA 3LJUX 1Y19B 3HIEA 5CLLB 5D3VA 1WJ1A 2RGNB 3T06A 4NSWA 1EAZA 3MDBC 3SUZA 1GG3A 1MKEA 1W1GA 1XR0B 4NY0A 2I5FA 4HSIA 3TO1A 2Z0QA 4HDOA 5C5BA 4BBKA 3MPXA 2DKPA 3BJIA 4DIXA 1V5MA 2IYBA 4MY6A 1E5WA 5D3WA 3VOQA 3ODXA 2J0KA 5D3YA 1BAKA 1K5DB 1TJ6A 3OANA 1DROA 5L81A 4K17A 5LONB 3ULBA 2L2IA 2J59M 2D9WA 2AL6A 1X05A 2ROZB 1UNQA 3ML4A 3U8ZA 2OTXA 2J0JA 2YT0A 2P0HA 2D9VA 3KY9A 4HAUB 2D10A 1X1FA 4Y94A 2K2UA 3ZDTA 2LYDA 4F7UP 2I1JA 2Z4DA 1W1DA 2Z0PA 4L1RA 1PMSA 5FI0A 5EFXA 3SV1A 2RNRB 2Z0OA 1TXDA 3IVFA 1EF1A 2Y8GA 3FSSA 1ZYIA 3TFMA 2MDXA 5DIFB 1MIXA 1GC7A 2COFA 3TW1A 4HAYB 2UZRA 3KZ1A 4C0AA 3UZTA 2KIGA 2N23A 5DI9B 4ZRIA 1NI2A 1LB1A 1ZM0A 4DBBA 2Y7BA 3DCXA 1KZ7A 4MK0A 1XKEA 3NW8A 2YT2A 4HDQA 4HATB 2OQBA 1WI1A 4CSQA 2RRFA 2CY5A 3QWMA 1XD4A 4TYZA 1DDMA 1WJMA 1P6SA 3P7ZA 4KAXB 4K2OA 2YT1A 3AJ4A 3X23A 2HE7A 3WYFB 2DX5A 2YF0A 4HB4B 5CLQB 4PNKA 4HAVB 2D9YA 3ODOA 5I2MA 2PZ1A 5DHFB 1Z87A 2FJUB 3DXEA 2LKOA 3VIAA 4CHMA 1V61A 3F5RA 1DYNA 3HW2B
chains in the Genus database with same CATH topology
4QJ4B 4L1RA 4IOYX 2KUQA 5IRSA 4PQ0A 5M4YB 4QJ3B 2KIGA 3GYPA 4OT1A 5I2SA 3A58A 3U12A 3NWFA 4QXAB 4D6WA 4KHBA 4KHOA 2ZKMX 2R2YA 2GCLA 3FVCA 3NWAA 4KHBB 4QJ5B 2K8EA 3NW8A 4HSIA 3TO1A 4Z2NA 2GUMA 2KR0A 4GNKB 3FSSA 2YT2A 2KIEA 5LG4B 4KHAA 1ZYIA 3OHMB 4OSNA 2K49A 5I2MA 3GYOA 2Z14A 4CSQA 4DIXA 2RRFA 2FJUB 2NBVA 4Z2MB 2Z59A 4IFSA 2Z13A 3NWDA 2GCJA 4GOUA 3TW1A 2Z4DA 3HIEA 3TVVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K49 A;  2K8E A; 
#chains in the Genus database with same CATH topology
 1QQG A;  1ZC4 B;  2VRW B;  2QKM A;  2YRY A;  5HE2 A;  5DH9 B;  1OY2 A;  3SYX A;  2GS0 A;  5JHG A;  2Y8F A;  1FHX A;  1FGY A;  2V76 A;  4KHB A;  3FVC A;  2GCL A;  4QJ5 B;  3NWA A;  4A6H A;  1FAO A;  3FEH A;  2W2W A;  1FGZ A;  4HAW B;  2UVM A;  3FM8 C;  2Z14 A;  1WGU A;  1X1G A;  5LOP B;  1BTN A;  2K00 A;  2M38 A;  2W2X C;  1N3H A;  2CAY A;  4DX8 A;  3NSU A;  4K2P A;  3DXC A;  3HSA A;  4QJ3 B;  3QBV B;  2D9Z A;  4GMX B;  4F7G A;  5D27 A;  1MI1 A;  5KQ1 A;  2KR0 A;  4L6E A;  1Q67 A;  1ZVR A;  5D3X A;  2ZPY A;  1X11 A;  3HK0 A;  1X86 A;  1FB8 A;  4D0N B;  4ZRJ A;  4DX9 0;  2DX1 A;  5IRS A;  2KUP A;  2LOX A;  2X18 A;  5GOW B;  4HB3 B;  2P0D A;  3PVL A;  4QXA B;  4KHB B;  2K8E A;  4Z2N A;  4CYE A;  2ADZ A;  3KRX A;  2EJ8 A;  1ZSQ A;  4EJN A;  2M14 A;  5C79 A;  3G9W A;  2Q13 A;  3GYO A;  3P6A A;  1AWE A;  1SHC A;  3CIK A;  1PFJ A;  2YS1 A;  4WVF B;  2ELB A;  2W2X D;  4QJ4 B;  3F0W A;  2N0Y A;  4PQ0 A;  1U27 A;  1UPR A;  1UNR A;  4YL8 A;  2FJL A;  5JLJ B;  4D6W A;  5KQ4 A;  2YS5 A;  1IRS A;  3PP2 A;  3ODW A;  5JHH A;  2DN6 A;  2DKQ A;  4DXA B;  2MWN B;  1WGQ A;  5J3Y A;  3PVU A;  2LUL A;  3PZD A;  2RUK B;  3A98 B;  2P8V A;  1EGX A;  2GCJ A;  1I2H A;  4F7H A;  4HAX B;  2KUQ A;  4MT7 A;  3CXB B;  2COC A;  4OT1 A;  4WSF A;  5I2S A;  2EMT A;  3ZVR A;  5HE1 A;  3PSC A;  1KI1 B;  2DYQ A;  3KSY A;  3QIJ A;  3SO6 A;  1V89 A;  1XOD A;  3AU5 A;  1DBH A;  2CY4 A;  2J0M A;  5HE3 A;  3RCP A;  3OHM B;  1NU2 A;  1NTV A;  1U2B A;  4YON A;  2DTC A;  1XCG A;  5JP4 A;  2KGX B;  3ULC A;  1ISN A;  2NZ8 B;  2I1K A;  5C16 A;  3O96 A;  3BIN A;  4CHJ A;  1QC6 A;  2QKL A;  4HHV A;  3GYP A;  2DA0 A;  2G35 A;  2K2J A;  5C6R A;  1MAI A;  4ZRK A;  5HE0 A;  1WG7 A;  3DXD A;  1I7A A;  1UPQ A;  1M7E A;  4TKN A;  4B6H A;  1OMW A;  3PG7 A;  2UZS A;  2R0D A;  2Z59 A;  4GXB A;  1BWN A;  2MKR A;  5J3Q A;  2VKI A;  4GOU A;  3TCA A;  2ROV A;  3TVV A;  4WJ7 A;  2D2Q A;  3HQC A;  2IFS A;  1P5T A;  3M1I B;  2LG1 A;  1MK7 B;  2DFK A;  5M4Y B;  1B55 A;  4A6K A;  5KCV A;  2JP2 A;  1W1H A;  1XX0 A;  2COA A;  1MK9 B;  2GJY A;  1M7R A;  4GNK B;  2KIE A;  4A6F A;  4GZU A;  2DHI A;  3B77 A;  1SGH A;  1LW3 A;  1KZG A;  3NWD A;  1J0W A;  1U5D A;  3D8F A;  2YVC A;  1EVH A;  1FHO A;  3WA0 A;  3PEG A;  1DDW A;  2NMB A;  2RLO A;  2RSG A;  3V5W A;  1BTK A;  2I5C A;  1UEF A;  2DYN A;  4GN1 A;  2ZKM X;  2H7E A;  1DDV A;  4KVG B;  3PVW A;  3KRW A;  2K49 A;  1U5G A;  2E2X A;  3SNH A;  4HAZ B;  3A8P A;  4Z2M B;  4A5K A;  4HB0 B;  2D11 A;  2D4Q A;  1NTY A;  5J3T A;  4XWX A;  1MIZ B;  1V88 A;  2BCJ A;  3NWF A;  4KHO A;  2R2Y A;  1Y5O A;  2EMS A;  3AU4 A;  2LOZ A;  3A8Q A;  1K5G B;  1GC6 A;  2DLW A;  1T77 A;  1P3R A;  4IFS A;  3D8D A;  4GPT B;  1AQC A;  2DHJ A;  1V5P A;  2H7D A;  2D9X A;  2YSZ A;  3D8E A;  2KCJ A;  2P0F A;  1UNP A;  2XQN M;  1TQZ A;  1FOE A;  2YS3 A;  2MFQ A;  2VSZ A;  4EMO A;  2R09 A;  1MPH A;  1FHW A;  1PLS A;  4H8S A;  5FI1 A;  1OQN A;  5LG4 B;  4K81 A;  1H4R A;  4KHA A;  1U5E A;  4A6F B;  1H10 A;  1ZC3 B;  2AEH A;  2NBV A;  2DHK A;  1V5U A;  2Z13 A;  2RVB B;  2CRF A;  4IOY X;  3U7D A;  5C5B B;  4IAP A;  1U29 A;  3N7C A;  1RJ2 A;  3A58 A;  3U12 A;  2COD A;  5DHA B;  1J19 A;  2L1C A;  1U5F A;  2GUM A;  2ELA A;  4HB2 B;  2HTH B;  4OSN A;  1WVH A;  1RRP B;  2EC1 A;  4GMV A;  4EKU A;  4P7I A;  3LJU X;  1Y19 B;  3HIE A;  5CLL B;  5D3V A;  1WJ1 A;  2RGN B;  3T06 A;  4NSW A;  1EAZ A;  3MDB C;  3SUZ A;  1GG3 A;  1MKE A;  1W1G A;  1XR0 B;  4NY0 A;  2I5F A;  4HSI A;  3TO1 A;  2Z0Q A;  4HDO A;  5C5B A;  4BBK A;  3MPX A;  2DKP A;  3BJI A;  4DIX A;  1V5M A;  2IYB A;  4MY6 A;  1E5W A;  5D3W A;  3VOQ A;  3ODX A;  2J0K A;  5D3Y A;  1BAK A;  1K5D B;  1TJ6 A;  3OAN A;  1DRO A;  5L81 A;  4K17 A;  5LON B;  3ULB A;  2L2I A;  2J59 M;  2D9W A;  2AL6 A;  1X05 A;  2ROZ B;  1UNQ A;  3ML4 A;  3U8Z A;  2OTX A;  2J0J A;  2YT0 A;  2P0H A;  2D9V A;  3KY9 A;  4HAU B;  2D10 A;  1X1F A;  4Y94 A;  2K2U A;  3ZDT A;  2LYD A;  4F7U P;  2I1J A;  2Z4D A;  1W1D A;  2Z0P A;  4L1R A;  1PMS A;  5FI0 A;  5EFX A;  3SV1 A;  2RNR B;  2Z0O A;  1TXD A;  3IVF A;  1EF1 A;  2Y8G A;  3FSS A;  1ZYI A;  3TFM A;  2MDX A;  5DIF B;  1MIX A;  1GC7 A;  2COF A;  3TW1 A;  4HAY B;  2UZR A;  3KZ1 A;  4C0A A;  3UZT A;  2KIG A;  2N23 A;  5DI9 B;  4ZRI A;  1NI2 A;  1LB1 A;  1ZM0 A;  4DBB A;  2Y7B A;  3DCX A;  1KZ7 A;  4MK0 A;  1XKE A;  3NW8 A;  2YT2 A;  4HDQ A;  4HAT B;  2OQB A;  1WI1 A;  4CSQ A;  2RRF A;  2CY5 A;  3QWM A;  1XD4 A;  4TYZ A;  1DDM A;  1WJM A;  1P6S A;  3P7Z A;  4KAX B;  4K2O A;  2YT1 A;  3AJ4 A;  3X23 A;  2HE7 A;  3WYF B;  2DX5 A;  2YF0 A;  4HB4 B;  5CLQ B;  4PNK A;  4HAV B;  2D9Y A;  3ODO A;  5I2M A;  2PZ1 A;  5DHF B;  1Z87 A;  2FJU B;  3DXE A;  2LKO A;  3VIA A;  4CHM A;  1V61 A;  3F5R A;  1DYN A;  3HW2 B; 
#chains in the Genus database with same CATH homology
 4QJ4 B;  4L1R A;  4IOY X;  2KUQ A;  5IRS A;  4PQ0 A;  5M4Y B;  4QJ3 B;  2KIG A;  3GYP A;  4OT1 A;  5I2S A;  3A58 A;  3U12 A;  3NWF A;  4QXA B;  4D6W A;  4KHB A;  4KHO A;  2ZKM X;  2R2Y A;  2GCL A;  3FVC A;  3NWA A;  4KHB B;  4QJ5 B;  2K8E A;  3NW8 A;  4HSI A;  3TO1 A;  4Z2N A;  2GUM A;  2KR0 A;  4GNK B;  3FSS A;  2YT2 A;  2KIE A;  5LG4 B;  4KHA A;  1ZYI A;  3OHM B;  4OSN A;  2K49 A;  5I2M A;  3GYO A;  2Z14 A;  4CSQ A;  4DIX A;  2RRF A;  2FJU B;  2NBV A;  4Z2M B;  2Z59 A;  4IFS A;  2Z13 A;  3NWD A;  2GCJ A;  4GOU A;  3TW1 A;  2Z4D A;  3HIE A;  3TVV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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