2K4RA

Nmr solution structure of the neurotrypsin kringle domain
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
77
structure length
77
Chain Sequence
RCGAGEPWGNATNLGVPCLHWDEVPPFLERSPPASWAELRGQPHNFCRSPDGAGRPWCFYRNAQGKVDWGYCDCGQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Neurotrypsin
publication title NMR Solution Structure of the Neurotrypsin Kringle Domain
pubmed doi rcsb
source organism Rattus norvegicus
total genus 14
structure length 77
sequence length 77
ec nomenclature ec 3.4.21.-:
pdb deposition date 2008-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 2k4rA00
3E6PL 2L0SA 3BT2A 1CEBA 2HPPP 3K65A 1KIVA 4D3CA 5CS1A 2KNFA 5COEA 1NK1A 2PF1A 4BVVA 4A5TS 1B2IA 1GMNA 3BT1A 1PK4A 5CS9A 2I9AA 3MKPA 1I5KA 3KIVA 4O03A 5CT3A 2KJ4A 1PK2A 3NXPA 2QJ4A 4DURA 3U73A 2DOIA 4NZQA 4BVWA 4KIVA 4BVCA 2HPQP 1CEAA 1GP9A 2PK4A 5CS5A 1HPKA 1NL1A 5CSQA 4BV7A 5CT2A 2QJ2A 1PKRA 1BHTA 1I71A 1PMKA 1KRNA 1TPKA 5CP9A 3LAQA 2FEBA 4BV5A 4BVDA 2DOHX 3HN4A 2PF2A 4HZHA 1KI0A 4IUAA 5CT1A 2I9BA 1A0HA 1KDUA 4CIKA 5CS3A 2K51A 2K4RA 1NL2A 2FD6A 1PMLA 3SP8A 5HPGA 1GMOA 1HPJA 1JFNA 1URKA 2SPTA
chains in the Genus database with same CATH superfamily
3E6PL 2L0SA 3BT2A 1CEBA 2HPPP 3K65A 1KIVA 4D3CA 5CS1A 2KNFA 5COEA 1NK1A 2PF1A 4BVVA 4A5TS 1B2IA 1GMNA 3BT1A 1PK4A 5CS9A 2I9AA 3MKPA 1I5KA 3KIVA 4O03A 5CT3A 2KJ4A 1PK2A 3NXPA 2QJ4A 4DURA 3U73A 2DOIA 4NZQA 4BVWA 4KIVA 4BVCA 2HPQP 1CEAA 1GP9A 2PK4A 5CS5A 1HPKA 1NL1A 5CSQA 4BV7A 5CT2A 2QJ2A 1PKRA 1BHTA 1I71A 1PMKA 1KRNA 1TPKA 5CP9A 3LAQA 2FEBA 4BV5A 4BVDA 2DOHX 3HN4A 2PF2A 4HZHA 1KI0A 4IUAA 5CT1A 2I9BA 1A0HA 1KDUA 4CIKA 5CS3A 2K51A 2K4RA 1NL2A 2FD6A 1PMLA 3SP8A 5HPGA 1GMOA 1HPJA 1JFNA 1URKA 2SPTA
chains in the Genus database with same CATH topology
3E6PL 2L0SA 3BT2A 1CEBA 2HPPP 3K65A 1KIVA 4D3CA 5CS1A 2KNFA 5COEA 1NK1A 2PF1A 4BVVA 4A5TS 1B2IA 1GMNA 3BT1A 1PK4A 5CS9A 2I9AA 3MKPA 1I5KA 3KIVA 4O03A 5CT3A 2KJ4A 1PK2A 3NXPA 2QJ4A 4DURA 3U73A 2DOIA 4NZQA 4BVWA 4KIVA 4BVCA 2HPQP 1CEAA 1GP9A 2PK4A 5CS5A 1HPKA 1NL1A 5CSQA 4BV7A 5CT2A 2QJ2A 1PKRA 1BHTA 1I71A 1PMKA 1KRNA 1TPKA 5CP9A 3LAQA 2FEBA 4BV5A 4BVDA 2DOHX 3HN4A 2PF2A 4HZHA 1KI0A 4IUAA 5CT1A 2I9BA 1A0HA 1KDUA 4CIKA 5CS3A 2K51A 2K4RA 1NL2A 2FD6A 1PMLA 3SP8A 5HPGA 1GMOA 1HPJA 1JFNA 1URKA 2SPTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E6P L;  2L0S A;  3BT2 A;  1CEB A;  2HPP P;  3K65 A;  1KIV A;  4D3C A;  5CS1 A;  2KNF A;  5COE A;  1NK1 A;  2PF1 A;  4BVV A;  4A5T S;  1B2I A;  1GMN A;  3BT1 A;  1PK4 A;  5CS9 A;  2I9A A;  3MKP A;  1I5K A;  3KIV A;  4O03 A;  5CT3 A;  2KJ4 A;  1PK2 A;  3NXP A;  2QJ4 A;  4DUR A;  3U73 A;  2DOI A;  4NZQ A;  4BVW A;  4KIV A;  4BVC A;  2HPQ P;  1CEA A;  1GP9 A;  2PK4 A;  5CS5 A;  1HPK A;  1NL1 A;  5CSQ A;  4BV7 A;  5CT2 A;  2QJ2 A;  1PKR A;  1BHT A;  1I71 A;  1PMK A;  1KRN A;  1TPK A;  5CP9 A;  3LAQ A;  2FEB A;  4BV5 A;  4BVD A;  2DOH X;  3HN4 A;  2PF2 A;  4HZH A;  1KI0 A;  4IUA A;  5CT1 A;  2I9B A;  1A0H A;  1KDU A;  4CIK A;  5CS3 A;  2K51 A;  2K4R A;  1NL2 A;  2FD6 A;  1PML A;  3SP8 A;  5HPG A;  1GMO A;  1HPJ A;  1JFN A;  1URK A;  2SPT A; 
#chains in the Genus database with same CATH topology
 3E6P L;  2L0S A;  3BT2 A;  1CEB A;  2HPP P;  3K65 A;  1KIV A;  4D3C A;  5CS1 A;  2KNF A;  5COE A;  1NK1 A;  2PF1 A;  4BVV A;  4A5T S;  1B2I A;  1GMN A;  3BT1 A;  1PK4 A;  5CS9 A;  2I9A A;  3MKP A;  1I5K A;  3KIV A;  4O03 A;  5CT3 A;  2KJ4 A;  1PK2 A;  3NXP A;  2QJ4 A;  4DUR A;  3U73 A;  2DOI A;  4NZQ A;  4BVW A;  4KIV A;  4BVC A;  2HPQ P;  1CEA A;  1GP9 A;  2PK4 A;  5CS5 A;  1HPK A;  1NL1 A;  5CSQ A;  4BV7 A;  5CT2 A;  2QJ2 A;  1PKR A;  1BHT A;  1I71 A;  1PMK A;  1KRN A;  1TPK A;  5CP9 A;  3LAQ A;  2FEB A;  4BV5 A;  4BVD A;  2DOH X;  3HN4 A;  2PF2 A;  4HZH A;  1KI0 A;  4IUA A;  5CT1 A;  2I9B A;  1A0H A;  1KDU A;  4CIK A;  5CS3 A;  2K51 A;  2K4R A;  1NL2 A;  2FD6 A;  1PML A;  3SP8 A;  5HPG A;  1GMO A;  1HPJ A;  1JFN A;  1URK A;  2SPT A; 
#chains in the Genus database with same CATH homology
 3E6P L;  2L0S A;  3BT2 A;  1CEB A;  2HPP P;  3K65 A;  1KIV A;  4D3C A;  5CS1 A;  2KNF A;  5COE A;  1NK1 A;  2PF1 A;  4BVV A;  4A5T S;  1B2I A;  1GMN A;  3BT1 A;  1PK4 A;  5CS9 A;  2I9A A;  3MKP A;  1I5K A;  3KIV A;  4O03 A;  5CT3 A;  2KJ4 A;  1PK2 A;  3NXP A;  2QJ4 A;  4DUR A;  3U73 A;  2DOI A;  4NZQ A;  4BVW A;  4KIV A;  4BVC A;  2HPQ P;  1CEA A;  1GP9 A;  2PK4 A;  5CS5 A;  1HPK A;  1NL1 A;  5CSQ A;  4BV7 A;  5CT2 A;  2QJ2 A;  1PKR A;  1BHT A;  1I71 A;  1PMK A;  1KRN A;  1TPK A;  5CP9 A;  3LAQ A;  2FEB A;  4BV5 A;  4BVD A;  2DOH X;  3HN4 A;  2PF2 A;  4HZH A;  1KI0 A;  4IUA A;  5CT1 A;  2I9B A;  1A0H A;  1KDU A;  4CIK A;  5CS3 A;  2K51 A;  2K4R A;  1NL2 A;  2FD6 A;  1PML A;  3SP8 A;  5HPG A;  1GMO A;  1HPJ A;  1JFN A;  1URK A;  2SPT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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