2K4TA

Solution structure of human vdac-1 in ldao micelles
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
285
structure length
285
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein,apoptosis
molecule keywords Voltage-dependent anion-selective channel protein 1
publication title Solution structure of the integral human membrane protein VDAC-1 in detergent micelles.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 285
sequence length 285
ec nomenclature
pdb deposition date 2008-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2k4tA00
2OMFA 4GCSA 4FRTA 1PHOA 3HW9A 3K19A 3VZUX 2FGQX 3SY7A 2Y2XA 5FVNA 7PRNA 3T20A 1HXUA 4FT6A 3SY9A 2J1NA 1PRNA 1HXXA 1GFOA 3UU2A 4FSOA 1GFQA 3VZTX 3UPGA 4LSFA 1GFNA 4D65A 2Y0KA 4LSHA 2PORA 1OSMA 3EMNX 4RJWA 3WI4A 1HXTA 3POUA 4D5UA 4FOZA 3HWBA 5DL5A 3WI5A 4LSIA 1GFMA 4KR4A 1OPFA 3SYSA 3VY8X 3POQA 2XE3A 2QTKA 2O4VA 2XE2A 3A2SX 2K4TA 4RJXA 1MPFA 1E54A 4FMSA 1BT9A 2Y0LA 5DL7A 3SYBA 3T24A 3JTYA 4D64A 2XE1A 2ZLDA 2Y0HA 6PRNA 8PRNA 3SZVA 2XG6A 4KR8A 3PRNA 4KRAA 4LSEA 1GFPA 3FYXA 4FRXA 4GCQA 3VY9X 3O0EA 4JFBA 3VZWX 3PORA 1H6S1 2FGRA 3SZDA 3T0SA 2XE5A 2ODJA 3POXA 3NSGA 2PRNA 4C69X 4AUIA 4BUMX 5DL6A 4FSPA 1BH3A 5JDPA 2J4UP 4GCPA 5DL8A 5PRNA 2ZFGA
chains in the Genus database with same CATH superfamily
2OMFA 1QJ8A 3LK3A 4GCSA 4FRTA 1PHOA 3HW9A 3K19A 3DWNA 4N59A 3UAQA 3VZUX 1G90A 2FGQX 4F4BA 2KZ7A 3SY7A 2Y2XA 3HOLA 3LK42 5FVNA 7PRNA 1MM4A 2R4PA 4C4VB 5AFUK 3T20A 4UB6O 2F1VA 1HXUA 5B66O 4FT6A 3SY9A 2R88A 5AFUL 2J1NA 3JCUO 1PRNA 2Y7SA 4RL9A 4N74A 1HXXA 3AA6A 4AYMC 1GFOA 2N2LA 3QRAA 3UU2A 3LK2A 3KZIO 2IWWA 4FSOA 1MM5A 2KC0A 2XMXA 1GFQA 3PGRA 3VZTX 1ZHYA 3UPGA 1BXWA 2IWVA 1GFNA 2YPVA 4LSFA 4FZMA 4AKRB 4D65A 2Y0KA 1YS5A 4FUVA 3LK3B 1ZHZA 4LSHA 4K3BA 4AFKA 4AKMA 3GP6A 2PORA 5TISO 2F1TA 1Q9FA 3NJTA 2R4LA 5EE2A 2WVPA 5KAFO 1OSMA 3EMNX 4RJWA 3VE2A 3WI4A 1HXTA 2KXPA 2GE4A 2MNHA 4G76A 3POUA 2X9KA 4O3XB 4D5UA 2R4OA 4FOZA 5IYUA 1T1LA 3AA7A 3AA0A 1IZNA 3HWBA 3AA6B 3PF1A 1Q9GA 4O4XA 5DL5A 3LK2B 5G3AA 3WI5A 4LSIA 5H2FO 1GFMA 4KR4A 1OPFA 4FZLA 3SYSA 5T5FA 2KDYA 2W80C 3C5OA 2XTQA 3BRYA 3VY8X 5E79O 3POQA 4N75A 2M06A 2XE3A 3PGSA 2QTKA 4G75A 3AA1A 2JMMA 4FZNA 2O4VA 3HOEA 5ADXK 2XE2A 4PUXA 3A2SX 2K4TA 3DA4A 4AZLA 4AYID 5ADXL 1ORMA 2KXPB 4RJXA 1T16A 2WJRA 1MPFA 2WJQA 3AA7B 1E54A 1IZNB 3AA0B 3RBHA 3TZGA 4FMSA 1BT9A 2Y0LA 5DL7A 3SYBA 2K0LA 4FESA 3DZMA 3JTYA 4O3WA 5GTIO 3T24A 3WU2O 4AYDC 4IL6O 4D64A 2XE1A 4O4UA 2LFUA 5G38A 3QRCA 2F1CX 2ZLDA 3DWOX 4O3ZA 3AAAA 4XNLA 3VE1A 4Z3TA 3AA1B 3AAEA 1ZHWA 2LHFA 2Y0HA 4C00A 2M07A 6PRNA 8PRNA 3SZVA 2XG6A 2N2MA 4KR8A 4O49A 1ZHTA 3PRNA 3PQSA 4KRAA 4LSEA 3A0HO 1GFPA 3FYXA 4FRXA 4GCQA 3VY9X 3O0EA 4JFBA 3VZWX 3BRZA 4XNKA 2MHLA 3KVDD 2R8AA 4GF4A 3LK41 5B5EO 2X27X 1ZHXA 1QJPA 4UB8O 4E1TA 3A0BO 3PORA 1H6S1 4RLBA 2XTRA 2FGRA 4PR7A 3SZDA 3G7GA 3T0SA 1THQA 2ODJA 2XE5A 3POXA 3BS0A 5GV0A 5G39A 3DA3A 1P4TA 3AAAB 4K3CA 4JCHA 3NSGA 4FQEA 3AAEB 3PQUA 2PRNA 4N58A 4PJ0O 3V8UA 4C69X 1S5LO 2R89A 4AUIA 4BUMX 5DL6A 4C4VA 4FSPA 1QJ9A 2ERVA 5GTHO 3PGUA 4GHBA 4QQ1A 1BH3A 5JDPA 2AXTO 5KAIO 2JQYA 2YNKA 4U9CA 2R4NA 4RLCA 2W81C 2J4UP 4GCPA 4AYNA 5D5DA 5DL8A 5PRNA 2ZFGA 4E1SA 2KZ7B 5G26A 4AKRA 4AYEC 4O3YA 4CTDA 4B61A
chains in the Genus database with same CATH topology
2OMFA 1QJ8A 3LK3A 4GCSA 4FRTA 1PHOA 3HW9A 3K19A 4N59A 3VZUX 3UAQA 1G90A 2FGQX 4F4BA 2KZ7A 3SY7A 2Y2XA 3HOLA 3LK42 5FVNA 7PRNA 1MM4A 5AFUK 3T20A 2F1VA 1HXUA 4FT6A 3SY9A 5AFUL 2J1NA 1PRNA 2Y7SA 4RL9A 1HXXA 3AA6A 4AYMC 1GFOA 2N2LA 3QRAA 3UU2A 3LK2A 4FSOA 1MM5A 2KC0A 2XMXA 1GFQA 3VZTX 3UPGA 1ZHYA 1BXWA 4LSFA 1GFNA 2YPVA 4AKRB 4FZMA 4D65A 2Y0KA 1YS5A 4FUVA 3LK3B 1ZHZA 4LSHA 4AFKA 4AKMA 3GP6A 2PORA 2F1TA 1Q9FA 5EE2A 1OSMA 3EMNX 4RJWA 3VE2A 3WI4A 1HXTA 2KXPA 2GE4A 2MNHA 4G76A 3POUA 4O3XB 4D5UA 4FOZA 5IYUA 3AA7A 3AA0A 1IZNA 3HWBA 3AA6B 1Q9GA 4O4XA 5DL5A 3LK2B 3WI5A 4LSIA 1GFMA 4KR4A 1OPFA 4FZLA 3SYSA 5T5FA 2KDYA 2W80C 3C5OA 2XTQA 3VY8X 3POQA 2M06A 2XE3A 2QTKA 4G75A 3AA1A 2JMMA 4FZNA 2O4VA 3HOEA 5ADXK 2XE2A 4PUXA 3A2SX 2K4TA 3DA4A 4AZLA 4AYID 5ADXL 1ORMA 2KXPB 4RJXA 1MPFA 3AA7B 3AA0B 1E54A 1IZNB 3RBHA 3TZGA 4FMSA 1BT9A 2Y0LA 5DL7A 3SYBA 2K0LA 4FESA 3JTYA 3T24A 4O3WA 4AYDC 4D64A 2XE1A 4O4UA 2LFUA 3QRCA 2ZLDA 4O3ZA 3AAAA 4XNLA 3VE1A 4Z3TA 3AA1B 3AAEA 1ZHWA 2LHFA 2Y0HA 6PRNA 2M07A 8PRNA 3SZVA 2XG6A 2N2MA 4KR8A 4O49A 1ZHTA 3PRNA 3PQSA 4KRAA 4LSEA 1GFPA 3FYXA 4FRXA 4GCQA 3VY9X 3O0EA 4JFBA 3VZWX 4XNKA 2MHLA 3KVDD 4GF4A 3LK41 2X27X 1ZHXA 1QJPA 4E1TA 3PORA 1H6S1 4RLBA 2XTRA 2FGRA 3SZDA 3G7GA 3T0SA 1THQA 2ODJA 2XE5A 3POXA 5GV0A 3DA3A 1P4TA 3AAAB 4JCHA 3NSGA 3AAEB 3PQUA 2PRNA 4N58A 3V8UA 4C69X 4AUIA 4BUMX 5DL6A 4FSPA 1QJ9A 2ERVA 4GHBA 4QQ1A 1BH3A 5JDPA 2YNKA 4U9CA 4RLCA 2W81C 2J4UP 4GCPA 4AYNA 5D5DA 5DL8A 5PRNA 2ZFGA 4E1SA 2KZ7B 5G26A 4AKRA 4AYEC 4O3YA 4B61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OMF A;  4GCS A;  4FRT A;  1PHO A;  3HW9 A;  3K19 A;  3VZU X;  2FGQ X;  3SY7 A;  2Y2X A;  5FVN A;  7PRN A;  3T20 A;  1HXU A;  4FT6 A;  3SY9 A;  2J1N A;  1PRN A;  1HXX A;  1GFO A;  3UU2 A;  4FSO A;  1GFQ A;  3VZT X;  3UPG A;  4LSF A;  1GFN A;  4D65 A;  2Y0K A;  4LSH A;  2POR A;  1OSM A;  3EMN X;  4RJW A;  3WI4 A;  1HXT A;  3POU A;  4D5U A;  4FOZ A;  3HWB A;  5DL5 A;  3WI5 A;  4LSI A;  1GFM A;  4KR4 A;  1OPF A;  3SYS A;  3VY8 X;  3POQ A;  2XE3 A;  2QTK A;  2O4V A;  2XE2 A;  3A2S X;  2K4T A;  4RJX A;  1MPF A;  1E54 A;  4FMS A;  1BT9 A;  2Y0L A;  5DL7 A;  3SYB A;  3T24 A;  3JTY A;  4D64 A;  2XE1 A;  2ZLD A;  2Y0H A;  6PRN A;  8PRN A;  3SZV A;  2XG6 A;  4KR8 A;  3PRN A;  4KRA A;  4LSE A;  1GFP A;  3FYX A;  4FRX A;  4GCQ A;  3VY9 X;  3O0E A;  4JFB A;  3VZW X;  3POR A;  1H6S 1;  2FGR A;  3SZD A;  3T0S A;  2XE5 A;  2ODJ A;  3POX A;  3NSG A;  2PRN A;  4C69 X;  4AUI A;  4BUM X;  5DL6 A;  4FSP A;  1BH3 A;  5JDP A;  2J4U P;  4GCP A;  5DL8 A;  5PRN A;  2ZFG A; 
#chains in the Genus database with same CATH topology
 2OMF A;  1QJ8 A;  3LK3 A;  4GCS A;  4FRT A;  1PHO A;  3HW9 A;  3K19 A;  3DWN A;  4N59 A;  3UAQ A;  3VZU X;  1G90 A;  2FGQ X;  4F4B A;  2KZ7 A;  3SY7 A;  2Y2X A;  3HOL A;  3LK4 2;  5FVN A;  7PRN A;  1MM4 A;  2R4P A;  4C4V B;  5AFU K;  3T20 A;  4UB6 O;  2F1V A;  1HXU A;  5B66 O;  4FT6 A;  3SY9 A;  2R88 A;  5AFU L;  2J1N A;  3JCU O;  1PRN A;  2Y7S A;  4RL9 A;  4N74 A;  1HXX A;  3AA6 A;  4AYM C;  1GFO A;  2N2L A;  3QRA A;  3UU2 A;  3LK2 A;  3KZI O;  2IWW A;  4FSO A;  1MM5 A;  2KC0 A;  2XMX A;  1GFQ A;  3PGR A;  3VZT X;  1ZHY A;  3UPG A;  1BXW A;  2IWV A;  1GFN A;  2YPV A;  4LSF A;  4FZM A;  4AKR B;  4D65 A;  2Y0K A;  1YS5 A;  4FUV A;  3LK3 B;  1ZHZ A;  4LSH A;  4K3B A;  4AFK A;  4AKM A;  3GP6 A;  2POR A;  5TIS O;  2F1T A;  1Q9F A;  3NJT A;  2R4L A;  5EE2 A;  2WVP A;  5KAF O;  1OSM A;  3EMN X;  4RJW A;  3VE2 A;  3WI4 A;  1HXT A;  2KXP A;  2GE4 A;  2MNH A;  4G76 A;  3POU A;  2X9K A;  4O3X B;  4D5U A;  2R4O A;  4FOZ A;  5IYU A;  1T1L A;  3AA7 A;  3AA0 A;  1IZN A;  3HWB A;  3AA6 B;  3PF1 A;  1Q9G A;  4O4X A;  5DL5 A;  3LK2 B;  5G3A A;  3WI5 A;  4LSI A;  5H2F O;  1GFM A;  4KR4 A;  1OPF A;  4FZL A;  3SYS A;  5T5F A;  2KDY A;  2W80 C;  3C5O A;  2XTQ A;  3BRY A;  3VY8 X;  5E79 O;  3POQ A;  4N75 A;  2M06 A;  2XE3 A;  3PGS A;  2QTK A;  4G75 A;  3AA1 A;  2JMM A;  4FZN A;  2O4V A;  3HOE A;  5ADX K;  2XE2 A;  4PUX A;  3A2S X;  2K4T A;  3DA4 A;  4AZL A;  4AYI D;  5ADX L;  1ORM A;  2KXP B;  4RJX A;  1T16 A;  2WJR A;  1MPF A;  2WJQ A;  3AA7 B;  1E54 A;  1IZN B;  3AA0 B;  3RBH A;  3TZG A;  4FMS A;  1BT9 A;  2Y0L A;  5DL7 A;  3SYB A;  2K0L A;  4FES A;  3DZM A;  3JTY A;  4O3W A;  5GTI O;  3T24 A;  3WU2 O;  4AYD C;  4IL6 O;  4D64 A;  2XE1 A;  4O4U A;  2LFU A;  5G38 A;  3QRC A;  2F1C X;  2ZLD A;  3DWO X;  4O3Z A;  3AAA A;  4XNL A;  3VE1 A;  4Z3T A;  3AA1 B;  3AAE A;  1ZHW A;  2LHF A;  2Y0H A;  4C00 A;  2M07 A;  6PRN A;  8PRN A;  3SZV A;  2XG6 A;  2N2M A;  4KR8 A;  4O49 A;  1ZHT A;  3PRN A;  3PQS A;  4KRA A;  4LSE A;  3A0H O;  1GFP A;  3FYX A;  4FRX A;  4GCQ A;  3VY9 X;  3O0E A;  4JFB A;  3VZW X;  3BRZ A;  4XNK A;  2MHL A;  3KVD D;  2R8A A;  4GF4 A;  3LK4 1;  5B5E O;  2X27 X;  1ZHX A;  1QJP A;  4UB8 O;  4E1T A;  3A0B O;  3POR A;  1H6S 1;  4RLB A;  2XTR A;  2FGR A;  4PR7 A;  3SZD A;  3G7G A;  3T0S A;  1THQ A;  2ODJ A;  2XE5 A;  3POX A;  3BS0 A;  5GV0 A;  5G39 A;  3DA3 A;  1P4T A;  3AAA B;  4K3C A;  4JCH A;  3NSG A;  4FQE A;  3AAE B;  3PQU A;  2PRN A;  4N58 A;  4PJ0 O;  3V8U A;  4C69 X;  1S5L O;  2R89 A;  4AUI A;  4BUM X;  5DL6 A;  4C4V A;  4FSP A;  1QJ9 A;  2ERV A;  5GTH O;  3PGU A;  4GHB A;  4QQ1 A;  1BH3 A;  5JDP A;  2AXT O;  5KAI O;  2JQY A;  2YNK A;  4U9C A;  2R4N A;  4RLC A;  2W81 C;  2J4U P;  4GCP A;  4AYN A;  5D5D A;  5DL8 A;  5PRN A;  2ZFG A;  4E1S A;  2KZ7 B;  5G26 A;  4AKR A;  4AYE C;  4O3Y A;  4CTD A;  4B61 A; 
#chains in the Genus database with same CATH homology
 2OMF A;  1QJ8 A;  3LK3 A;  4GCS A;  4FRT A;  1PHO A;  3HW9 A;  3K19 A;  4N59 A;  3VZU X;  3UAQ A;  1G90 A;  2FGQ X;  4F4B A;  2KZ7 A;  3SY7 A;  2Y2X A;  3HOL A;  3LK4 2;  5FVN A;  7PRN A;  1MM4 A;  5AFU K;  3T20 A;  2F1V A;  1HXU A;  4FT6 A;  3SY9 A;  5AFU L;  2J1N A;  1PRN A;  2Y7S A;  4RL9 A;  1HXX A;  3AA6 A;  4AYM C;  1GFO A;  2N2L A;  3QRA A;  3UU2 A;  3LK2 A;  4FSO A;  1MM5 A;  2KC0 A;  2XMX A;  1GFQ A;  3VZT X;  3UPG A;  1ZHY A;  1BXW A;  4LSF A;  1GFN A;  2YPV A;  4AKR B;  4FZM A;  4D65 A;  2Y0K A;  1YS5 A;  4FUV A;  3LK3 B;  1ZHZ A;  4LSH A;  4AFK A;  4AKM A;  3GP6 A;  2POR A;  2F1T A;  1Q9F A;  5EE2 A;  1OSM A;  3EMN X;  4RJW A;  3VE2 A;  3WI4 A;  1HXT A;  2KXP A;  2GE4 A;  2MNH A;  4G76 A;  3POU A;  4O3X B;  4D5U A;  4FOZ A;  5IYU A;  3AA7 A;  3AA0 A;  1IZN A;  3HWB A;  3AA6 B;  1Q9G A;  4O4X A;  5DL5 A;  3LK2 B;  3WI5 A;  4LSI A;  1GFM A;  4KR4 A;  1OPF A;  4FZL A;  3SYS A;  5T5F A;  2KDY A;  2W80 C;  3C5O A;  2XTQ A;  3VY8 X;  3POQ A;  2M06 A;  2XE3 A;  2QTK A;  4G75 A;  3AA1 A;  2JMM A;  4FZN A;  2O4V A;  3HOE A;  5ADX K;  2XE2 A;  4PUX A;  3A2S X;  2K4T A;  3DA4 A;  4AZL A;  4AYI D;  5ADX L;  1ORM A;  2KXP B;  4RJX A;  1MPF A;  3AA7 B;  3AA0 B;  1E54 A;  1IZN B;  3RBH A;  3TZG A;  4FMS A;  1BT9 A;  2Y0L A;  5DL7 A;  3SYB A;  2K0L A;  4FES A;  3JTY A;  3T24 A;  4O3W A;  4AYD C;  4D64 A;  2XE1 A;  4O4U A;  2LFU A;  3QRC A;  2ZLD A;  4O3Z A;  3AAA A;  4XNL A;  3VE1 A;  4Z3T A;  3AA1 B;  3AAE A;  1ZHW A;  2LHF A;  2Y0H A;  6PRN A;  2M07 A;  8PRN A;  3SZV A;  2XG6 A;  2N2M A;  4KR8 A;  4O49 A;  1ZHT A;  3PRN A;  3PQS A;  4KRA A;  4LSE A;  1GFP A;  3FYX A;  4FRX A;  4GCQ A;  3VY9 X;  3O0E A;  4JFB A;  3VZW X;  4XNK A;  2MHL A;  3KVD D;  4GF4 A;  3LK4 1;  2X27 X;  1ZHX A;  1QJP A;  4E1T A;  3POR A;  1H6S 1;  4RLB A;  2XTR A;  2FGR A;  3SZD A;  3G7G A;  3T0S A;  1THQ A;  2ODJ A;  2XE5 A;  3POX A;  5GV0 A;  3DA3 A;  1P4T A;  3AAA B;  4JCH A;  3NSG A;  3AAE B;  3PQU A;  2PRN A;  4N58 A;  3V8U A;  4C69 X;  4AUI A;  4BUM X;  5DL6 A;  4FSP A;  1QJ9 A;  2ERV A;  4GHB A;  4QQ1 A;  1BH3 A;  5JDP A;  2YNK A;  4U9C A;  4RLC A;  2W81 C;  2J4U P;  4GCP A;  4AYN A;  5D5D A;  5DL8 A;  5PRN A;  2ZFG A;  4E1S A;  2KZ7 B;  5G26 A;  4AKR A;  4AYE C;  4O3Y A;  4B61 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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