2K5JA

Solution structure of protein yiif from shigella flexneri serotype 5b (strain 8401) . northeast structural genomics consortium target sft1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
80
structure length
80
Chain Sequence
MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of protein yiiF from Shigella flexneri serotype 5b (strain 8401) . Northeast Structural Genomics Consortium target sft1
rcsb
source organism Shigella flexneri 5 str. 8401
molecule tags Structural genomics, unknown function
molecule keywords uncharacterized protein yiiF
total genus 12
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k5jA01
2BJ3A 3FT7A 2JXGA 2K9IA 2WVEA 2KELA 2BNWA 3FMTA 3LGHA 4ME7E 1QTGA 2CPGA 2WVDA 1EA4A 1MYLA 2CAJA 2RBFA 3VEAA 2BNZA 2JXIA 1U9PA 1X93A 2BJ8A 2CADA 3H87C 2H1OE 2WVBA 3VW4A 3QOQA 2BA3A 1B01A 1MYKA 2K6LA 1ARRA 2WVFA 1IRQA 2AY0A 1BAZA 4FXEA 2BJ1A 2CAXA 2WVCA 1B28A 2HZAA 2HZVA 2BSQE 2K5JA 1NLAA 2BJ9A 1Q5VA 1P94A 3OD2A 1BDTA 1ARQA 2GPEA 1BDVA 2JXHA 4D8JA 4HV0A 2CA9A 2K1OA 1MNTA 3VEBA 2K29A 1PARA 3GXQA 2BJ7A
chains in the Genus database with same CATH superfamily
3FT7A 2JXGA 2KELA 3LGHA 3LJPA 1EA4A 2CADA 3VW4A 4LQ9A 1OG7A 2A2BA 2WVBA 4AAIA 1B01A 2K6LA 2WVFA 4QPXA 4FXEA 2UUTA 2BSQE 2K5JA 3BSNA 4O4RA 1SIWA 2JXHA 4LQ3A 2K29A 2AN7A 2BJ3A 4NRUA 2K9IA 2WVEA 1SH3A 3FMTA 2BNWA 1SH2A 2CPGA 2H3AA 3VEAA 2BNZA 3SFUA 1U9PA 1X93A 2JXIA 3H87C 3IR7A 3H5YA 1IRQA 1BAZA 2BJ1A 2CAXA 2HZAA 2HZVA 2B43A 1NLAA 3OD2A 4MJWA 2JBVA 1QTGA 2WVDA 1OHNA 2RBFA 2H1OE 3NAIA 4LRVA 3QOQA 1B28A 4NRTA 1P94A 3NAHA 1BDTA 3BSOA 1ARQA 1BDVA 1SH0A 2CA9A 1MNTA 3VEBA 3UR0A 1PARA 3GXQA 3UPFA 3UQSA 2BJ7A 3NNEA 1Q16A 2UUWA 4ME7E 3QIDA 1MYLA 2CAJA 2BJ8A 2KOEA 3G5OA 2BA3A 1MYKA 1ARRA 2AY0A 2WVCA 3H5XA 2BJ9A 1Q5VA 2KKEA 2WK4A 2Q2KA 2ADLA 2GPEA 3NO7A 4D8JA 4HV0A 2K1OA 2CKWA 3SFGA
chains in the Genus database with same CATH topology
2BJ3A 3FT7A 2JXGA 2K9IA 2WVEA 2KELA 2BNWA 3FMTA 3LGHA 4ME7E 1QTGA 2CPGA 2WVDA 1EA4A 1MYLA 2CAJA 2RBFA 3VEAA 2BNZA 2JXIA 1U9PA 1X93A 2BJ8A 2CADA 3H87C 2H1OE 2WVBA 3VW4A 3QOQA 2BA3A 1B01A 1MYKA 2K6LA 1ARRA 2WVFA 1IRQA 2AY0A 1BAZA 4FXEA 2BJ1A 2CAXA 2WVCA 1B28A 2HZAA 2HZVA 2BSQE 2K5JA 1NLAA 2BJ9A 1Q5VA 1P94A 3OD2A 1BDTA 1ARQA 2GPEA 1BDVA 2JXHA 4D8JA 4HV0A 2CA9A 2K1OA 1MNTA 3VEBA 2K29A 1PARA 3GXQA 2BJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BJ3 A;  3FT7 A;  2JXG A;  2K9I A;  2WVE A;  2KEL A;  2BNW A;  3FMT A;  3LGH A;  4ME7 E;  1QTG A;  2CPG A;  2WVD A;  1EA4 A;  1MYL A;  2CAJ A;  2RBF A;  3VEA A;  2BNZ A;  2JXI A;  1U9P A;  1X93 A;  2BJ8 A;  2CAD A;  3H87 C;  2H1O E;  2WVB A;  3VW4 A;  3QOQ A;  2BA3 A;  1B01 A;  1MYK A;  2K6L A;  1ARR A;  2WVF A;  1IRQ A;  2AY0 A;  1BAZ A;  4FXE A;  2BJ1 A;  2CAX A;  2WVC A;  1B28 A;  2HZA A;  2HZV A;  2BSQ E;  2K5J A;  1NLA A;  2BJ9 A;  1Q5V A;  1P94 A;  3OD2 A;  1BDT A;  1ARQ A;  2GPE A;  1BDV A;  2JXH A;  4D8J A;  4HV0 A;  2CA9 A;  2K1O A;  1MNT A;  3VEB A;  2K29 A;  1PAR A;  3GXQ A;  2BJ7 A; 
#chains in the Genus database with same CATH topology
 3FT7 A;  2JXG A;  2KEL A;  3LGH A;  3LJP A;  1EA4 A;  2CAD A;  3VW4 A;  4LQ9 A;  1OG7 A;  2A2B A;  2WVB A;  4AAI A;  1B01 A;  2K6L A;  2WVF A;  4QPX A;  4FXE A;  2UUT A;  2BSQ E;  2K5J A;  3BSN A;  4O4R A;  1SIW A;  2JXH A;  4LQ3 A;  2K29 A;  2AN7 A;  2BJ3 A;  4NRU A;  2K9I A;  2WVE A;  1SH3 A;  3FMT A;  2BNW A;  1SH2 A;  2CPG A;  2H3A A;  3VEA A;  2BNZ A;  3SFU A;  1U9P A;  1X93 A;  2JXI A;  3H87 C;  3IR7 A;  3H5Y A;  1IRQ A;  1BAZ A;  2BJ1 A;  2CAX A;  2HZA A;  2HZV A;  2B43 A;  1NLA A;  3OD2 A;  4MJW A;  2JBV A;  1QTG A;  2WVD A;  1OHN A;  2RBF A;  2H1O E;  3NAI A;  4LRV A;  3QOQ A;  1B28 A;  4NRT A;  1P94 A;  3NAH A;  1BDT A;  3BSO A;  1ARQ A;  1BDV A;  1SH0 A;  2CA9 A;  1MNT A;  3VEB A;  3UR0 A;  1PAR A;  3GXQ A;  3UPF A;  3UQS A;  2BJ7 A;  3NNE A;  1Q16 A;  2UUW A;  4ME7 E;  3QID A;  1MYL A;  2CAJ A;  2BJ8 A;  2KOE A;  3G5O A;  2BA3 A;  1MYK A;  1ARR A;  2AY0 A;  2WVC A;  3H5X A;  2BJ9 A;  1Q5V A;  2KKE A;  2WK4 A;  2Q2K A;  2ADL A;  2GPE A;  3NO7 A;  4D8J A;  4HV0 A;  2K1O A;  2CKW A;  3SFG A; 
#chains in the Genus database with same CATH homology
 2BJ3 A;  3FT7 A;  2JXG A;  2K9I A;  2WVE A;  2KEL A;  2BNW A;  3FMT A;  3LGH A;  4ME7 E;  1QTG A;  2CPG A;  2WVD A;  1EA4 A;  1MYL A;  2CAJ A;  2RBF A;  3VEA A;  2BNZ A;  2JXI A;  1U9P A;  1X93 A;  2BJ8 A;  2CAD A;  3H87 C;  2H1O E;  2WVB A;  3VW4 A;  3QOQ A;  2BA3 A;  1B01 A;  1MYK A;  2K6L A;  1ARR A;  2WVF A;  1IRQ A;  2AY0 A;  1BAZ A;  4FXE A;  2BJ1 A;  2CAX A;  2WVC A;  1B28 A;  2HZA A;  2HZV A;  2BSQ E;  2K5J A;  1NLA A;  2BJ9 A;  1Q5V A;  1P94 A;  3OD2 A;  1BDT A;  1ARQ A;  2GPE A;  1BDV A;  2JXH A;  4D8J A;  4HV0 A;  2CA9 A;  2K1O A;  1MNT A;  3VEB A;  2K29 A;  1PAR A;  3GXQ A;  2BJ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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