2K5JA

Solution structure of protein yiif from shigella flexneri serotype 5b (strain 8401) . northeast structural genomics consortium target sft1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
80
structure length
80
Chain Sequence
MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of protein yiiF from Shigella flexneri serotype 5b (strain 8401) . Northeast Structural Genomics Consortium target sft1
rcsb
source organism Shigella flexneri 5 str. 8401
molecule tags Structural genomics, unknown function
molecule keywords uncharacterized protein yiiF
total genus 12
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2k5jA01
4ME7E 2K9IA 4FXEA 1MYLA 2K6LA 4HV0A 2BA3A 2CPGA 1IRQA 2BJ3A 3QOQA 1EA4A 2JXHA 1MNTA 2BJ1A 2GPEA 3FT7A 1BDTA 1MYKA 3LGHA 2CADA 4D8JA 3VEBA 1QTGA 3FMTA 2HZAA 1ARQA 2BJ9A 2WVEA 2JXGA 3GXQA 1X93A 2BJ7A 1Q5VA 2WVBA 1B28A 2BNZA 3OD2A 1BAZA 2K5JA 3H87C 3VEAA 2CAJA 2BJ8A 3VW4A 1PARA 2CAXA 2RBFA 2K29A 1B01A 1U9PA 1ARRA 2CA9A 1P94A 2WVDA 2WVFA 1BDVA 2BNWA 2H1OE 2JXIA 1NLAA 2K1OA 2KELA 2BSQE 2HZVA 2AY0A 2WVCA
chains in the Genus database with same CATH superfamily
4ME7E 4FXEA 1IRQA 1EA4A 2JXHA 1MNTA 4AAIA 3LGHA 2CADA 3BSOA 1QTGA 1SH2A 2BJ9A 1X93A 2BJ7A 1B28A 3OD2A 1OG7A 1BAZA 2A2BA 2CAXA 2CA9A 1ARRA 2WVDA 2WVFA 1SH0A 3H5XA 4NRUA 1NLAA 2H3AA 1Q16A 1SIWA 3NO7A 3BSNA 2WK4A 4LQ3A 2K6LA 2CPGA 1BDTA 4LRVA 4D8JA 3VEBA 2HZAA 2Q2KA 2JXGA 2WVBA 2BNZA 2ADLA 3H87C 3VEAA 2KOEA 2BJ8A 3NAHA 1PARA 3UQSA 2K29A 1BDVA 1P94A 1SH3A 2K1OA 3NNEA 3SFGA 2JXIA 2BA3A 1OHNA 3QOQA 2BJ3A 2UUWA 2BJ1A 2GPEA 3FT7A 4QPXA 1ARQA 3G5OA 3NAIA 2CKWA 2JBVA 2CAJA 3VW4A 3UR0A 2AN7A 3H5YA 2KKEA 1B01A 2H1OE 2KELA 4MJWA 2BSQE 4O4RA 2HZVA 2AY0A 2K9IA 1MYLA 4HV0A 3SFUA 1MYKA 2B43A 3QIDA 4NRTA 3FMTA 3LJPA 3IR7A 2WVEA 4LQ9A 3GXQA 1Q5VA 2UUTA 3UPFA 2K5JA 2RBFA 2BNWA 1U9PA 2WVCA
chains in the Genus database with same CATH topology
4ME7E 2K9IA 4FXEA 1MYLA 2K6LA 4HV0A 2BA3A 2CPGA 1IRQA 2BJ3A 3QOQA 1EA4A 2JXHA 1MNTA 2BJ1A 2GPEA 3FT7A 1BDTA 1MYKA 3LGHA 2CADA 4D8JA 3VEBA 1QTGA 3FMTA 2HZAA 1ARQA 2BJ9A 2WVEA 2JXGA 3GXQA 1X93A 2BJ7A 1Q5VA 2WVBA 1B28A 2BNZA 3OD2A 1BAZA 2K5JA 3H87C 3VEAA 2CAJA 2BJ8A 3VW4A 1PARA 2CAXA 2RBFA 2K29A 1B01A 1U9PA 1ARRA 2CA9A 1P94A 2WVDA 2WVFA 1BDVA 2BNWA 2H1OE 2JXIA 1NLAA 2K1OA 2KELA 2BSQE 2HZVA 2AY0A 2WVCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ME7 E;  2K9I A;  4FXE A;  1MYL A;  2K6L A;  4HV0 A;  2BA3 A;  2CPG A;  1IRQ A;  2BJ3 A;  3QOQ A;  1EA4 A;  2JXH A;  1MNT A;  2BJ1 A;  2GPE A;  3FT7 A;  1BDT A;  1MYK A;  3LGH A;  2CAD A;  4D8J A;  3VEB A;  1QTG A;  3FMT A;  2HZA A;  1ARQ A;  2BJ9 A;  2WVE A;  2JXG A;  3GXQ A;  1X93 A;  2BJ7 A;  1Q5V A;  2WVB A;  1B28 A;  2BNZ A;  3OD2 A;  1BAZ A;  2K5J A;  3H87 C;  3VEA A;  2CAJ A;  2BJ8 A;  3VW4 A;  1PAR A;  2CAX A;  2RBF A;  2K29 A;  1B01 A;  1U9P A;  1ARR A;  2CA9 A;  1P94 A;  2WVD A;  2WVF A;  1BDV A;  2BNW A;  2H1O E;  2JXI A;  1NLA A;  2K1O A;  2KEL A;  2BSQ E;  2HZV A;  2AY0 A;  2WVC A; 
#chains in the Genus database with same CATH topology
 4ME7 E;  4FXE A;  1IRQ A;  1EA4 A;  2JXH A;  1MNT A;  4AAI A;  3LGH A;  2CAD A;  3BSO A;  1QTG A;  1SH2 A;  2BJ9 A;  1X93 A;  2BJ7 A;  1B28 A;  3OD2 A;  1OG7 A;  1BAZ A;  2A2B A;  2CAX A;  2CA9 A;  1ARR A;  2WVD A;  2WVF A;  1SH0 A;  3H5X A;  4NRU A;  1NLA A;  2H3A A;  1Q16 A;  1SIW A;  3NO7 A;  3BSN A;  2WK4 A;  4LQ3 A;  2K6L A;  2CPG A;  1BDT A;  4LRV A;  4D8J A;  3VEB A;  2HZA A;  2Q2K A;  2JXG A;  2WVB A;  2BNZ A;  2ADL A;  3H87 C;  3VEA A;  2KOE A;  2BJ8 A;  3NAH A;  1PAR A;  3UQS A;  2K29 A;  1BDV A;  1P94 A;  1SH3 A;  2K1O A;  3NNE A;  3SFG A;  2JXI A;  2BA3 A;  1OHN A;  3QOQ A;  2BJ3 A;  2UUW A;  2BJ1 A;  2GPE A;  3FT7 A;  4QPX A;  1ARQ A;  3G5O A;  3NAI A;  2CKW A;  2JBV A;  2CAJ A;  3VW4 A;  3UR0 A;  2AN7 A;  3H5Y A;  2KKE A;  1B01 A;  2H1O E;  2KEL A;  4MJW A;  2BSQ E;  4O4R A;  2HZV A;  2AY0 A;  2K9I A;  1MYL A;  4HV0 A;  3SFU A;  1MYK A;  2B43 A;  3QID A;  4NRT A;  3FMT A;  3LJP A;  3IR7 A;  2WVE A;  4LQ9 A;  3GXQ A;  1Q5V A;  2UUT A;  3UPF A;  2K5J A;  2RBF A;  2BNW A;  1U9P A;  2WVC A; 
#chains in the Genus database with same CATH homology
 4ME7 E;  2K9I A;  4FXE A;  1MYL A;  2K6L A;  4HV0 A;  2BA3 A;  2CPG A;  1IRQ A;  2BJ3 A;  3QOQ A;  1EA4 A;  2JXH A;  1MNT A;  2BJ1 A;  2GPE A;  3FT7 A;  1BDT A;  1MYK A;  3LGH A;  2CAD A;  4D8J A;  3VEB A;  1QTG A;  3FMT A;  2HZA A;  1ARQ A;  2BJ9 A;  2WVE A;  2JXG A;  3GXQ A;  1X93 A;  2BJ7 A;  1Q5V A;  2WVB A;  1B28 A;  2BNZ A;  3OD2 A;  1BAZ A;  2K5J A;  3H87 C;  3VEA A;  2CAJ A;  2BJ8 A;  3VW4 A;  1PAR A;  2CAX A;  2RBF A;  2K29 A;  1B01 A;  1U9P A;  1ARR A;  2CA9 A;  1P94 A;  2WVD A;  2WVF A;  1BDV A;  2BNW A;  2H1O E;  2JXI A;  1NLA A;  2K1O A;  2KEL A;  2BSQ E;  2HZV A;  2AY0 A;  2WVC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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