2K5XA

Chemical shift structure of colicin e9 dnase domain with its cognate immunity protein im9
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Colicin-E9 immunity protein
publication title Structure Determination of Protein-Protein Complexes Using NMR Chemical Shifts: Case of an Endonuclease Colicin-Immunity Protein Complex
pubmed rcsb
source organism Escherichia coli
molecule tags Immune system/hydrolase
total genus 27
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k5xA00
1UJZA 2K5XA 4QKOA 2VLOA 2WPTA 3GJNA 1CEIA 4UHPB 1AYIA 2GZGA 7CEIA 1E0HA 1IMPA 1BXIA 5EW5E 2K0DX 3GKLC 2JB0A 1ZNVA 1IMQA 2JBGA 2GZEA 1MZ8A 2VLQA 2VLPA 1EMVA 2JAZA 4F37A 2VLNA 1GXGA 1UNKA 2ERHA 1GXHA 1FR2A 2NO8A 2GYKA 2GZIA 2GZFA 3U43A 2GZJA
chains in the Genus database with same CATH superfamily
2JGPA 2ONTA 4U0BA 1OR5A 5HGMA 1YI2P 1M74A 2GZGA 4H2XC 5BS1A 3B4QA 2JYLA 3GZLA 4U0AA 3CCSP 2PEMA 1E6JP 1EMVA 3G1GA 2OTJP 1N8RQ 2K2QA 2PEQA 2FHSC 1EIAA 2N6YA 1QVFO 2PEKA 1Z6MA 2NO8A 1VQ9P 2KOOA 3DS5A 2FACA 3G71P 4XFXA 4COCA 2L22A 3GZMA 3MGEA 2JU1A 4WYMA 1QRJA 1K73Q 2Z45A 3G29A 2M8LA 7CEIA 5HGLA 4NEOA 2XZ1C 2MD9A 2PEIA 4BPFA 2FQ1A 1BAJA 2QEXP 2K94A 2KOQA 1RO0A 3G21A 3CE7A 1QVGO 2MVVA 1VQLP 1ZMBA 3I56P 2OTLP 1X3OA 1AUMA 2M8NA 3H47A 2L6EA 3G1IA 2GDXA 1IMQA 1MZ8A 2KOPA 3M1MA 4H2YC 1JJ2O 1ACPA 1YJ9P 4MRTC 5DCKA 2MF4A 4DG9A 2LIUA 2LOLA 1D1DA 2CNRA 2ERHA 2KGAA 5KP8B 2MY5A 3DS4A 2L0QA 2K5XA 2JU2A 2Z44A 1HQBA 2JO0A 4QKOA 2WPTA 1CEIA 3H4EA 1E0HA 1T8KA 1A43A 4GR6A 3EJEA 2JAZA 2PNGA 2Z46A 1YJWP 1VQMP 2CQ8A 2GZIA 5KP6B 4XRQA 2KOSA 3CCVP 1NQ4A 3DPHA 5CZDB 5JPAA 2VLPA 1Q82Q 1NJIQ 2KG8A 4PH1A 1YJNP 2AFEA 3HYBA 3EJDA 4XROA 2GYKA 1VQ6P 2KODA 2FQ0A 4HKGA 3CMEP 5HV8A 1RNIA 1M1KQ 2LF4A 2PEJA 2CWOA 3CCRP 1ZNVA 5F2OA 2AVAA 2LTEA 2K0YA 3I55P 5KP7B 3Q20A 5I4TG 4F37A 2K92A 2KG6A 1GXGA 2EHSA 3U43A 4BPGA 2XXMA 5HGOA 2FVFA 1K9MQ 1VKUA 2JQ4A 1M6NA 3CCUP 2QNWA 2FAEA 2OARA 3NY7B 1M90Q 2N5HA 2LPKA 3CC4P 2L9FA 3DS0A 3RG6C 2EHTA 2XZ0D 3CCJP 3CC2P 3CCLP 2P9XA 2EG5A 2GZFA 1VQPP 4IZ6A 3CCQP 4COPA 2FVEA 5HGNA 2VSQA 1VQ7P 4PXHB 2N50A 2BUOA 3CCMP 1K8AQ 2EFJA 1RO2A 2KWLA 1KC8Q 5HVCA 3DS1A 1VQKP 4U0FA 4UHPB 4PH0A 1S72P 2MR8A 5BS2A 2KGDA 4CA3A 2KORA 3DS3A 1AF8A 4U0EA 2KGCA 2X2BA 2FVAA 3LRYA 3P05A 1FR2A 1YHQP 3G28A 1Q81Q 1A8OA 2QA4P 3B5IA 2DGYA 1DNYA 1IMPA 4R0MA 3GKLC 3CCEP 2BHVA 2LMLA 2VLQA 4XFYA 3HZQA 2AFDA 3EJBA 3CC7P 3OW2O 5F2NA 1F80D 2LL8A 1M6EX 2VLOA 3GJNA 4XFZA 2CGQA 1YITP 5EW5E 1VQOP 2LKIA 2EIAA 2GZEA 3WBHA 4BPHA 3CPWO 1UNKA 1GXHA 3VRLC 2KG9A 2GDYA 2N98A 2LIWA 2M5RA 1AYIA 3NTEA 1VQNP 3RG2A 1BXIA 4IPYA 2PENA 1Q7YQ 2JB0A 3CXCO 3G6EP 2JBGA 4U0CA 5EJDA 2N5IA 3E2DA 2PY8A 1W2BO 2GDWA 1L0HA 2KGEA 1HY8A 1YIJP 1L0IA 5F2KA 4GR2A 2K0DX 3H0DA 2N6ZA 1KLPA 2E1MA 1IUQA 1EOQA 2FQ2A 2DNWA 2MVUA 3G0VA 1VQ4P 4PWVB 1VQ5P 2K93A 3DTJA 4H2WC 1KQSO 2MR7A 1DV5A 1GPJA 2JYGA 2FADA 3DS2A 3LMOA 2VLNA 2KW2A 4U0DA 2AF8A 2K0XA 3G4SP 1VQ8P 2GZJA 2KR5A 1UJZA 2CG5B 2PEOA 3G26A 1Q86Q 4QNBA 2XT1A 4M0IA 3CD6P 2XV6A 2M8PA 1KD1Q 1VHNA 2L4BA 1K30A 3CMAP 2ROQA
chains in the Genus database with same CATH topology
1UJZA 2K5XA 4QKOA 2VLOA 2WPTA 3GJNA 1CEIA 4UHPB 1AYIA 2GZGA 7CEIA 1E0HA 1IMPA 1BXIA 5EW5E 2K0DX 3GKLC 2JB0A 1ZNVA 1IMQA 2JBGA 2GZEA 1MZ8A 2VLQA 2VLPA 1EMVA 2JAZA 4F37A 2VLNA 1GXGA 1UNKA 2ERHA 1GXHA 1FR2A 2NO8A 2GYKA 2GZIA 2GZFA 3U43A 2GZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UJZ A;  2K5X A;  4QKO A;  2VLO A;  2WPT A;  3GJN A;  1CEI A;  4UHP B;  1AYI A;  2GZG A;  7CEI A;  1E0H A;  1IMP A;  1BXI A;  5EW5 E;  2K0D X;  3GKL C;  2JB0 A;  1ZNV A;  1IMQ A;  2JBG A;  2GZE A;  1MZ8 A;  2VLQ A;  2VLP A;  1EMV A;  2JAZ A;  4F37 A;  2VLN A;  1GXG A;  1UNK A;  2ERH A;  1GXH A;  1FR2 A;  2NO8 A;  2GYK A;  2GZI A;  2GZF A;  3U43 A;  2GZJ A; 
#chains in the Genus database with same CATH topology
 2JGP A;  2ONT A;  4U0B A;  1OR5 A;  5HGM A;  1YI2 P;  1M74 A;  2GZG A;  4H2X C;  5BS1 A;  3B4Q A;  2JYL A;  3GZL A;  4U0A A;  3CCS P;  2PEM A;  1E6J P;  1EMV A;  3G1G A;  2OTJ P;  1N8R Q;  2K2Q A;  2PEQ A;  2FHS C;  1EIA A;  2N6Y A;  1QVF O;  2PEK A;  1Z6M A;  2NO8 A;  1VQ9 P;  2KOO A;  3DS5 A;  2FAC A;  3G71 P;  4XFX A;  4COC A;  2L22 A;  3GZM A;  3MGE A;  2JU1 A;  4WYM A;  1QRJ A;  1K73 Q;  2Z45 A;  3G29 A;  2M8L A;  7CEI A;  5HGL A;  4NEO A;  2XZ1 C;  2MD9 A;  2PEI A;  4BPF A;  2FQ1 A;  1BAJ A;  2QEX P;  2K94 A;  2KOQ A;  1RO0 A;  3G21 A;  3CE7 A;  1QVG O;  2MVV A;  1VQL P;  1ZMB A;  3I56 P;  2OTL P;  1X3O A;  1AUM A;  2M8N A;  3H47 A;  2L6E A;  3G1I A;  2GDX A;  1IMQ A;  1MZ8 A;  2KOP A;  3M1M A;  4H2Y C;  1JJ2 O;  1ACP A;  1YJ9 P;  4MRT C;  5DCK A;  2MF4 A;  4DG9 A;  2LIU A;  2LOL A;  1D1D A;  2CNR A;  2ERH A;  2KGA A;  5KP8 B;  2MY5 A;  3DS4 A;  2L0Q A;  2K5X A;  2JU2 A;  2Z44 A;  1HQB A;  2JO0 A;  4QKO A;  2WPT A;  1CEI A;  3H4E A;  1E0H A;  1T8K A;  1A43 A;  4GR6 A;  3EJE A;  2JAZ A;  2PNG A;  2Z46 A;  1YJW P;  1VQM P;  2CQ8 A;  2GZI A;  5KP6 B;  4XRQ A;  2KOS A;  3CCV P;  1NQ4 A;  3DPH A;  5CZD B;  5JPA A;  2VLP A;  1Q82 Q;  1NJI Q;  2KG8 A;  4PH1 A;  1YJN P;  2AFE A;  3HYB A;  3EJD A;  4XRO A;  2GYK A;  1VQ6 P;  2KOD A;  2FQ0 A;  4HKG A;  3CME P;  5HV8 A;  1RNI A;  1M1K Q;  2LF4 A;  2PEJ A;  2CWO A;  3CCR P;  1ZNV A;  5F2O A;  2AVA A;  2LTE A;  2K0Y A;  3I55 P;  5KP7 B;  3Q20 A;  5I4T G;  4F37 A;  2K92 A;  2KG6 A;  1GXG A;  2EHS A;  3U43 A;  4BPG A;  2XXM A;  5HGO A;  2FVF A;  1K9M Q;  1VKU A;  2JQ4 A;  1M6N A;  3CCU P;  2QNW A;  2FAE A;  2OAR A;  3NY7 B;  1M90 Q;  2N5H A;  2LPK A;  3CC4 P;  2L9F A;  3DS0 A;  3RG6 C;  2EHT A;  2XZ0 D;  3CCJ P;  3CC2 P;  3CCL P;  2P9X A;  2EG5 A;  2GZF A;  1VQP P;  4IZ6 A;  3CCQ P;  4COP A;  2FVE A;  5HGN A;  2VSQ A;  1VQ7 P;  4PXH B;  2N50 A;  2BUO A;  3CCM P;  1K8A Q;  2EFJ A;  1RO2 A;  2KWL A;  1KC8 Q;  5HVC A;  3DS1 A;  1VQK P;  4U0F A;  4UHP B;  4PH0 A;  1S72 P;  2MR8 A;  5BS2 A;  2KGD A;  4CA3 A;  2KOR A;  3DS3 A;  1AF8 A;  4U0E A;  2KGC A;  2X2B A;  2FVA A;  3LRY A;  3P05 A;  1FR2 A;  1YHQ P;  3G28 A;  1Q81 Q;  1A8O A;  2QA4 P;  3B5I A;  2DGY A;  1DNY A;  1IMP A;  4R0M A;  3GKL C;  3CCE P;  2BHV A;  2LML A;  2VLQ A;  4XFY A;  3HZQ A;  2AFD A;  3EJB A;  3CC7 P;  3OW2 O;  5F2N A;  1F80 D;  2LL8 A;  1M6E X;  2VLO A;  3GJN A;  4XFZ A;  2CGQ A;  1YIT P;  5EW5 E;  1VQO P;  2LKI A;  2EIA A;  2GZE A;  3WBH A;  4BPH A;  3CPW O;  1UNK A;  1GXH A;  3VRL C;  2KG9 A;  2GDY A;  2N98 A;  2LIW A;  2M5R A;  1AYI A;  3NTE A;  1VQN P;  3RG2 A;  1BXI A;  4IPY A;  2PEN A;  1Q7Y Q;  2JB0 A;  3CXC O;  3G6E P;  2JBG A;  4U0C A;  5EJD A;  2N5I A;  3E2D A;  2PY8 A;  1W2B O;  2GDW A;  1L0H A;  2KGE A;  1HY8 A;  1YIJ P;  1L0I A;  5F2K A;  4GR2 A;  2K0D X;  3H0D A;  2N6Z A;  1KLP A;  2E1M A;  1IUQ A;  1EOQ A;  2FQ2 A;  2DNW A;  2MVU A;  3G0V A;  1VQ4 P;  4PWV B;  1VQ5 P;  2K93 A;  3DTJ A;  4H2W C;  1KQS O;  2MR7 A;  1DV5 A;  1GPJ A;  2JYG A;  2FAD A;  3DS2 A;  3LMO A;  2VLN A;  2KW2 A;  4U0D A;  2AF8 A;  2K0X A;  3G4S P;  1VQ8 P;  2GZJ A;  2KR5 A;  1UJZ A;  2CG5 B;  2PEO A;  3G26 A;  1Q86 Q;  4QNB A;  2XT1 A;  4M0I A;  3CD6 P;  2XV6 A;  2M8P A;  1KD1 Q;  1VHN A;  2L4B A;  1K30 A;  3CMA P;  2ROQ A; 
#chains in the Genus database with same CATH homology
 1UJZ A;  2K5X A;  4QKO A;  2VLO A;  2WPT A;  3GJN A;  1CEI A;  4UHP B;  1AYI A;  2GZG A;  7CEI A;  1E0H A;  1IMP A;  1BXI A;  5EW5 E;  2K0D X;  3GKL C;  2JB0 A;  1ZNV A;  1IMQ A;  2JBG A;  2GZE A;  1MZ8 A;  2VLQ A;  2VLP A;  1EMV A;  2JAZ A;  4F37 A;  2VLN A;  1GXG A;  1UNK A;  2ERH A;  1GXH A;  1FR2 A;  2NO8 A;  2GYK A;  2GZI A;  2GZF A;  3U43 A;  2GZJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...