2K5XA

Chemical shift structure of colicin e9 dnase domain with its cognate immunity protein im9
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Colicin-E9 immunity protein
publication title Structure Determination of Protein-Protein Complexes Using NMR Chemical Shifts: Case of an Endonuclease Colicin-Immunity Protein Complex
pubmed rcsb
source organism Escherichia coli
molecule tags Immune system/hydrolase
total genus 27
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k5xA00
2ERHA 2GZEA 2NO8A 2K0DX 2GZGA 2VLNA 1EMVA 1GXHA 1MZ8A 1IMQA 1IMPA 1CEIA 4UHPB 2WPTA 2JBGA 1ZNVA 2K5XA 1AYIA 2VLPA 2JAZA 2VLQA 7CEIA 2JB0A 1GXGA 5EW5E 3GJNA 2GYKA 4QKOA 1E0HA 2GZJA 1FR2A 2VLOA 4F37A 1BXIA 2GZFA 1UJZA 2GZIA 3GKLC 3U43A 1UNKA
chains in the Genus database with same CATH superfamily
1D1DA 1EMVA 1KD1Q 2CWOA 3OW2O 2JU1A 3CCMP 3NY7B 3GZMA 1VQNP 1VQ7P 1HY8A 2KODA 5DCKA 3I56P 2M8PA 2FQ1A 2PEMA 2PY8A 2QNWA 5I4TG 3DS0A 1QRJA 1E6JP 3E2DA 1VQ5P 2AFEA 1RO2A 2FHSC 2Z44A 2MVVA 3G4SP 1QVGO 1L0IA 1T8KA 4XFXA 5BS1A 3H47A 1GPJA 2N6YA 3DPHA 3CCUP 3VRLC 2FVAA 4MRTC 3RG6C 2VLQA 3CC7P 2K94A 4U0AA 5HGOA 3Q20A 2LTEA 2BHVA 2K0YA 3CPWO 4IZ6A 2KR5A 2LIUA 1YJWP 5JPAA 2KG6A 2KW2A 3DS1A 1F80D 2JBGA 3M1MA 2JU2A 1M1KQ 5HV8A 1ACPA 2L6EA 2MY5A 1X3OA 2JB0A 2PEQA 2LKIA 1K8AQ 3G1GA 4R0MA 5EJDA 3GKLC 2VSQA 4BPFA 4COPA 2KGDA 5F2KA 3MGEA 2GDXA 1MZ8A 2FADA 2WPTA 3CE7A 2LF4A 5KP8B 2AFDA 2LMLA 1VQPP 2JAZA 1HQBA 2MR7A 2KOSA 3EJDA 2M8LA 1YITP 2KGCA 1A8OA 3DTJA 2JO0A 5HVCA 2QA4P 2KGAA 2N5HA 1K9MQ 1CEIA 4UHPB 5BS2A 4U0CA 5KP6B 3B5IA 1N8RQ 2OTJP 1FR2A 3DS3A 2XXMA 3G0VA 2N5IA 1UNKA 3G21A 5CZDB 3CD6P 5KP7B 3CC4P 2OTLP 2M8NA 1RO0A 1Z6MA 4PH1A 1VQLP 1GXHA 1IMPA 2N98A 2K0XA 1NJIQ 1M90Q 1K30A 2P9XA 1KQSO 1EIAA 2GZJA 3CCQP 2QEXP 4GR6A 2N50A 2VLNA 2XZ0D 2ROQA 3CCLP 2EG5A 2PENA 1YJNP 1S72P 4DG9A 1AYIA 2MVUA 2KORA 3DS2A 3EJEA 4PXHB 2KOOA 4QKOA 2PEOA 4PH0A 1KC8Q 2N6ZA 1ZMBA 3CCRP 1K73Q 5HGNA 1DNYA 4U0FA 2L0QA 2GDYA 1VQ6P 2KGEA 2L9FA 2PEIA 3LRYA 4WYMA 2GYKA 1E0HA 1YHQP 1W2BO 1YJ9P 2GZFA 3U43A 1YI2P 3HYBA 1DV5A 2GZEA 5HGMA 3CCSP 4XROA 3CMEP 1VQMP 1JJ2O 2Z46A 3G29A 2EIAA 2PNGA 2JQ4A 2MD9A 3I55P 1Q82Q 2VLOA 4H2WC 4HKGA 1M74A 1VQ4P 5F2NA 2ERHA 2JYGA 2NO8A 1VQ9P 2XV6A 1IMQA 1BAJA 3G26A 4IPYA 2CQ8A 1KLPA 2XZ1C 2AVAA 2LOLA 4H2YC 2K93A 1BXIA 1UJZA 4CA3A 1QVFO 2FVFA 2K0DX 2FAEA 3CCEP 1Q81Q 3G6EP 2MF4A 2JGPA 3G71P 1VKUA 1OR5A 4U0EA 4COCA 2FQ2A 2GDWA 1L0HA 2PEJA 7CEIA 1M6EX 2MR8A 3P05A 3NTEA 1VQKP 2KG8A 2KOQA 2L4BA 3CCVP 2ONTA 3DS5A 2E1MA 1AF8A 2KOPA 2CG5B 3GZLA 2DNWA 4BPGA 3CMAP 3G28A 4XFZA 2BUOA 2FVEA 2Z45A 1NQ4A 3B4QA 3GJNA 4PWVB 1IUQA 4XFYA 3CCJP 4U0BA 4F37A 1VHNA 4BPHA 5HGLA 2LIWA 2EHSA 2JYLA 1Q7YQ 3H4EA 5F2OA 2FACA 3LMOA 2EFJA 2L22A 3RG2A 1EOQA 2KWLA 3HZQA 2EHTA 2XT1A 2X2BA 3G1IA 4U0DA 1VQOP 2K2QA 2M5RA 5EW5E 2LPKA 4GR2A 4M0IA 2K92A 2AF8A 4QNBA 2LL8A 3EJBA 4H2XC 4XRQA 2GZIA 3DS4A 2FQ0A 1A43A 2OARA 2GZGA 2KG9A 2DGYA 3CXCO 1ZNVA 2K5XA 2VLPA 1AUMA 1GXGA 2CNRA 1YIJP 1RNIA 3CC2P 3WBHA 4NEOA 3H0DA 1Q86Q 2PEKA 1M6NA 1VQ8P 2CGQA
chains in the Genus database with same CATH topology
2ERHA 2GZEA 2NO8A 2K0DX 2GZGA 2VLNA 1EMVA 1GXHA 1MZ8A 1IMQA 1IMPA 1CEIA 4UHPB 2WPTA 2JBGA 1ZNVA 2K5XA 1AYIA 2VLPA 2JAZA 2VLQA 7CEIA 2JB0A 1GXGA 5EW5E 3GJNA 2GYKA 4QKOA 1E0HA 2GZJA 1FR2A 2VLOA 4F37A 1BXIA 2GZFA 1UJZA 2GZIA 3GKLC 3U43A 1UNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ERH A;  2GZE A;  2NO8 A;  2K0D X;  2GZG A;  2VLN A;  1EMV A;  1GXH A;  1MZ8 A;  1IMQ A;  1IMP A;  1CEI A;  4UHP B;  2WPT A;  2JBG A;  1ZNV A;  2K5X A;  1AYI A;  2VLP A;  2JAZ A;  2VLQ A;  7CEI A;  2JB0 A;  1GXG A;  5EW5 E;  3GJN A;  2GYK A;  4QKO A;  1E0H A;  2GZJ A;  1FR2 A;  2VLO A;  4F37 A;  1BXI A;  2GZF A;  1UJZ A;  2GZI A;  3GKL C;  3U43 A;  1UNK A; 
#chains in the Genus database with same CATH topology
 1D1D A;  1EMV A;  1KD1 Q;  2CWO A;  3OW2 O;  2JU1 A;  3CCM P;  3NY7 B;  3GZM A;  1VQN P;  1VQ7 P;  1HY8 A;  2KOD A;  5DCK A;  3I56 P;  2M8P A;  2FQ1 A;  2PEM A;  2PY8 A;  2QNW A;  5I4T G;  3DS0 A;  1QRJ A;  1E6J P;  3E2D A;  1VQ5 P;  2AFE A;  1RO2 A;  2FHS C;  2Z44 A;  2MVV A;  3G4S P;  1QVG O;  1L0I A;  1T8K A;  4XFX A;  5BS1 A;  3H47 A;  1GPJ A;  2N6Y A;  3DPH A;  3CCU P;  3VRL C;  2FVA A;  4MRT C;  3RG6 C;  2VLQ A;  3CC7 P;  2K94 A;  4U0A A;  5HGO A;  3Q20 A;  2LTE A;  2BHV A;  2K0Y A;  3CPW O;  4IZ6 A;  2KR5 A;  2LIU A;  1YJW P;  5JPA A;  2KG6 A;  2KW2 A;  3DS1 A;  1F80 D;  2JBG A;  3M1M A;  2JU2 A;  1M1K Q;  5HV8 A;  1ACP A;  2L6E A;  2MY5 A;  1X3O A;  2JB0 A;  2PEQ A;  2LKI A;  1K8A Q;  3G1G A;  4R0M A;  5EJD A;  3GKL C;  2VSQ A;  4BPF A;  4COP A;  2KGD A;  5F2K A;  3MGE A;  2GDX A;  1MZ8 A;  2FAD A;  2WPT A;  3CE7 A;  2LF4 A;  5KP8 B;  2AFD A;  2LML A;  1VQP P;  2JAZ A;  1HQB A;  2MR7 A;  2KOS A;  3EJD A;  2M8L A;  1YIT P;  2KGC A;  1A8O A;  3DTJ A;  2JO0 A;  5HVC A;  2QA4 P;  2KGA A;  2N5H A;  1K9M Q;  1CEI A;  4UHP B;  5BS2 A;  4U0C A;  5KP6 B;  3B5I A;  1N8R Q;  2OTJ P;  1FR2 A;  3DS3 A;  2XXM A;  3G0V A;  2N5I A;  1UNK A;  3G21 A;  5CZD B;  3CD6 P;  5KP7 B;  3CC4 P;  2OTL P;  2M8N A;  1RO0 A;  1Z6M A;  4PH1 A;  1VQL P;  1GXH A;  1IMP A;  2N98 A;  2K0X A;  1NJI Q;  1M90 Q;  1K30 A;  2P9X A;  1KQS O;  1EIA A;  2GZJ A;  3CCQ P;  2QEX P;  4GR6 A;  2N50 A;  2VLN A;  2XZ0 D;  2ROQ A;  3CCL P;  2EG5 A;  2PEN A;  1YJN P;  1S72 P;  4DG9 A;  1AYI A;  2MVU A;  2KOR A;  3DS2 A;  3EJE A;  4PXH B;  2KOO A;  4QKO A;  2PEO A;  4PH0 A;  1KC8 Q;  2N6Z A;  1ZMB A;  3CCR P;  1K73 Q;  5HGN A;  1DNY A;  4U0F A;  2L0Q A;  2GDY A;  1VQ6 P;  2KGE A;  2L9F A;  2PEI A;  3LRY A;  4WYM A;  2GYK A;  1E0H A;  1YHQ P;  1W2B O;  1YJ9 P;  2GZF A;  3U43 A;  1YI2 P;  3HYB A;  1DV5 A;  2GZE A;  5HGM A;  3CCS P;  4XRO A;  3CME P;  1VQM P;  1JJ2 O;  2Z46 A;  3G29 A;  2EIA A;  2PNG A;  2JQ4 A;  2MD9 A;  3I55 P;  1Q82 Q;  2VLO A;  4H2W C;  4HKG A;  1M74 A;  1VQ4 P;  5F2N A;  2ERH A;  2JYG A;  2NO8 A;  1VQ9 P;  2XV6 A;  1IMQ A;  1BAJ A;  3G26 A;  4IPY A;  2CQ8 A;  1KLP A;  2XZ1 C;  2AVA A;  2LOL A;  4H2Y C;  2K93 A;  1BXI A;  1UJZ A;  4CA3 A;  1QVF O;  2FVF A;  2K0D X;  2FAE A;  3CCE P;  1Q81 Q;  3G6E P;  2MF4 A;  2JGP A;  3G71 P;  1VKU A;  1OR5 A;  4U0E A;  4COC A;  2FQ2 A;  2GDW A;  1L0H A;  2PEJ A;  7CEI A;  1M6E X;  2MR8 A;  3P05 A;  3NTE A;  1VQK P;  2KG8 A;  2KOQ A;  2L4B A;  3CCV P;  2ONT A;  3DS5 A;  2E1M A;  1AF8 A;  2KOP A;  2CG5 B;  3GZL A;  2DNW A;  4BPG A;  3CMA P;  3G28 A;  4XFZ A;  2BUO A;  2FVE A;  2Z45 A;  1NQ4 A;  3B4Q A;  3GJN A;  4PWV B;  1IUQ A;  4XFY A;  3CCJ P;  4U0B A;  4F37 A;  1VHN A;  4BPH A;  5HGL A;  2LIW A;  2EHS A;  2JYL A;  1Q7Y Q;  3H4E A;  5F2O A;  2FAC A;  3LMO A;  2EFJ A;  2L22 A;  3RG2 A;  1EOQ A;  2KWL A;  3HZQ A;  2EHT A;  2XT1 A;  2X2B A;  3G1I A;  4U0D A;  1VQO P;  2K2Q A;  2M5R A;  5EW5 E;  2LPK A;  4GR2 A;  4M0I A;  2K92 A;  2AF8 A;  4QNB A;  2LL8 A;  3EJB A;  4H2X C;  4XRQ A;  2GZI A;  3DS4 A;  2FQ0 A;  1A43 A;  2OAR A;  2GZG A;  2KG9 A;  2DGY A;  3CXC O;  1ZNV A;  2K5X A;  2VLP A;  1AUM A;  1GXG A;  2CNR A;  1YIJ P;  1RNI A;  3CC2 P;  3WBH A;  4NEO A;  3H0D A;  1Q86 Q;  2PEK A;  1M6N A;  1VQ8 P;  2CGQ A; 
#chains in the Genus database with same CATH homology
 2ERH A;  2GZE A;  2NO8 A;  2K0D X;  2GZG A;  2VLN A;  1EMV A;  1GXH A;  1MZ8 A;  1IMQ A;  1IMP A;  1CEI A;  4UHP B;  2WPT A;  2JBG A;  1ZNV A;  2K5X A;  1AYI A;  2VLP A;  2JAZ A;  2VLQ A;  7CEI A;  2JB0 A;  1GXG A;  5EW5 E;  3GJN A;  2GYK A;  4QKO A;  1E0H A;  2GZJ A;  1FR2 A;  2VLO A;  4F37 A;  1BXI A;  2GZF A;  1UJZ A;  2GZI A;  3GKL C;  3U43 A;  1UNK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...