2K5XA

Chemical shift structure of colicin e9 dnase domain with its cognate immunity protein im9
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
86
structure length
86
Chain Sequence
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system/hydrolase
molecule keywords Colicin-E9 immunity protein
publication title Structure Determination of Protein-Protein Complexes Using NMR Chemical Shifts: Case of an Endonuclease Colicin-Immunity Protein Complex
pubmed rcsb
source organism Escherichia coli
total genus 27
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2k5xA00
2GYKA 2GZIA 1AYIA 2ERHA 1GXHA 1E0HA 1IMPA 2VLNA 1UJZA 3GKLC 2VLQA 1EMVA 2VLPA 4F37A 1GXGA 1IMQA 1BXIA 4QKOA 3U43A 2JAZA 1CEIA 2K5XA 7CEIA 2WPTA 2NO8A 2GZEA 1FR2A 3GJNA 2JBGA 2GZGA 1ZNVA 1MZ8A 4UHPB 2JB0A 1UNKA 2GZJA 2K0DX 5EW5E 2GZFA 2VLOA
chains in the Genus database with same CATH superfamily
2KGCA 5HGNA 2FACA 2OTLP 4PH1A 4QNBA 3GKLC 4F37A 3CD6P 2Z45A 3WBHA 5HGMA 1VQ4P 1GPJA 5JPAA 2NO8A 2K0XA 3Q20A 1L0IA 4H2XC 4XFYA 2JQ4A 2XZ0D 1YJ9P 2BHVA 2FHSC 1AYIA 2KG6A 2GDXA 4H2WC 1YJWP 3CMEP 1BXIA 1K9MQ 3EJBA 2E1MA 3CCSP 2FVEA 2OTJP 3GZMA 2CG5B 4R0MA 3OW2O 2CWOA 5DCKA 2CGQA 5KP8B 1IMPA 5HGLA 2L9FA 1JJ2O 2AFDA 2Z46A 2LL8A 1YI2P 1CEIA 2CNRA 2Z44A 1K30A 3CCLP 2PENA 2GZJA 2ONTA 2PEMA 2FQ2A 2KGAA 1RNIA 1VQ9P 4PH0A 4IZ6A 5CZDB 2KW2A 2FAEA 1IMQA 4MRTC 1DNYA 3U43A 2LOLA 2M5RA 4U0BA 3GZLA 3CC7P 3I56P 2EG5A 2FVFA 2MF4A 3G4SP 4CA3A 2L6EA 2K94A 4U0FA 1E0HA 4IPYA 4XFXA 2X2BA 1VQ7P 3LMOA 5F2OA 1HY8A 2EIAA 2AF8A 1S72P 3CMAP 1YJNP 2EFJA 1M6NA 2XZ1C 2MR8A 2PY8A 3G1GA 3DS1A 2M8LA 4H2YC 1W2BO 2MY5A 1NQ4A 1KC8Q 1UJZA 3NTEA 2JO0A 4XFZA 4M0IA 3G26A 3LRYA 3CCUP 1N8RQ 2MR7A 3G29A 2LF4A 2KORA 1QVGO 3B5IA 2JBGA 3CCQP 1DV5A 4U0EA 1F80D 4BPFA 5EW5E 2K0YA 2L4BA 2GDWA 3HZQA 3G1IA 3G6EP 3HYBA 5F2KA 4PXHB 2QA4P 2LPKA 1E6JP 3EJDA 3DS0A 1A43A 1MZ8A 5HGOA 2K92A 3DS2A 2PEJA 2P9XA 2KR5A 2M8PA 1RO0A 2VLPA 3RG2A 4QKOA 1YITP 3CC2P 2EHTA 4XROA 1IUQA 2JU1A 4GR6A 1L0HA 1D1DA 2KOOA 1YIJP 1KQSO 1VQMP 2JYGA 2XXMA 2VSQA 2K93A 1EIAA 1M6EX 3VRLC 4PWVB 2LTEA 2PEOA 2L22A 1KLPA 3E2DA 1VQ5P 1M1KQ 2AFEA 3H0DA 2PEQA 4HKGA 2VLOA 2N5HA 1GXHA 2QNWA 1M90Q 1VQNP 4NEOA 1OR5A 1Q81Q 5EJDA 3RG6C 2XT1A 4U0DA 1VQLP 2CQ8A 2JAZA 1VKUA 2KOSA 3CCJP 2XV6A 2GZEA 3CE7A 2MVVA 2GZGA 2JB0A 2N5IA 2KG8A 2KODA 4COPA 1BAJA 2OARA 5KP6B 2VLNA 3DS5A 2PNGA 4XRQA 1M74A 2N50A 2JGPA 2FQ1A 3G28A 1FR2A 1ACPA 3DS3A 3CC4P 4UHPB 4BPHA 2K0DX 2JU2A 2N98A 5I4TG 1VQKP 4GR2A 3I55P 4U0CA 5BS2A 2M8NA 2BUOA 2LIUA 2FQ0A 1AF8A 2ROQA 3GJNA 4WYMA 2PEIA 1UNKA 1A8OA 2AVAA 2GYKA 2GZIA 3G21A 1QVFO 2EHSA 2MD9A 1EMVA 3P05A 5HV8A 2MVUA 1RO2A 2K5XA 2FADA 2WPTA 2QEXP 2KOPA 3B4QA 1Z6MA 3H47A 2PEKA 2GZFA 4U0AA 1HQBA 1Q7YQ 1KD1Q 1ZMBA 1QRJA 3MGEA 2KGDA 1VQ8P 2KOQA 7CEIA 3H4EA 2FVAA 3DTJA 5F2NA 3CPWO 3CCVP 1Q82Q 2LIWA 1GXGA 1YHQP 1VQOP 3CCEP 2GDYA 2KGEA 1VQ6P 2KWLA 1T8KA 2KG9A 4BPGA 2JYLA 1Q86Q 3EJEA 1VHNA 1VQPP 5KP7B 2K2QA 2ERHA 2L0QA 2N6ZA 3CCMP 3G71P 5BS1A 2VLQA 1K8AQ 3G0VA 1X3OA 2LMLA 1EOQA 5HVCA 2DNWA 3DS4A 3CCRP 2N6YA 1AUMA 3M1MA 3NY7B 1K73Q 3DPHA 1ZNVA 1NJIQ 4COCA 3CXCO 4DG9A 2LKIA 2DGYA
chains in the Genus database with same CATH topology
2GYKA 2GZIA 1AYIA 2ERHA 1GXHA 1E0HA 1IMPA 2VLNA 1UJZA 3GKLC 2VLQA 1EMVA 2VLPA 4F37A 1GXGA 1IMQA 1BXIA 4QKOA 3U43A 2JAZA 1CEIA 2K5XA 7CEIA 2WPTA 2NO8A 2GZEA 1FR2A 3GJNA 2JBGA 2GZGA 1ZNVA 1MZ8A 4UHPB 2JB0A 1UNKA 2GZJA 2K0DX 5EW5E 2GZFA 2VLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GYK A;  2GZI A;  1AYI A;  2ERH A;  1GXH A;  1E0H A;  1IMP A;  2VLN A;  1UJZ A;  3GKL C;  2VLQ A;  1EMV A;  2VLP A;  4F37 A;  1GXG A;  1IMQ A;  1BXI A;  4QKO A;  3U43 A;  2JAZ A;  1CEI A;  2K5X A;  7CEI A;  2WPT A;  2NO8 A;  2GZE A;  1FR2 A;  3GJN A;  2JBG A;  2GZG A;  1ZNV A;  1MZ8 A;  4UHP B;  2JB0 A;  1UNK A;  2GZJ A;  2K0D X;  5EW5 E;  2GZF A;  2VLO A; 
#chains in the Genus database with same CATH topology
 2KGC A;  5HGN A;  2FAC A;  2OTL P;  4PH1 A;  4QNB A;  3GKL C;  4F37 A;  3CD6 P;  2Z45 A;  3WBH A;  5HGM A;  1VQ4 P;  1GPJ A;  5JPA A;  2NO8 A;  2K0X A;  3Q20 A;  1L0I A;  4H2X C;  4XFY A;  2JQ4 A;  2XZ0 D;  1YJ9 P;  2BHV A;  2FHS C;  1AYI A;  2KG6 A;  2GDX A;  4H2W C;  1YJW P;  3CME P;  1BXI A;  1K9M Q;  3EJB A;  2E1M A;  3CCS P;  2FVE A;  2OTJ P;  3GZM A;  2CG5 B;  4R0M A;  3OW2 O;  2CWO A;  5DCK A;  2CGQ A;  5KP8 B;  1IMP A;  5HGL A;  2L9F A;  1JJ2 O;  2AFD A;  2Z46 A;  2LL8 A;  1YI2 P;  1CEI A;  2CNR A;  2Z44 A;  1K30 A;  3CCL P;  2PEN A;  2GZJ A;  2ONT A;  2PEM A;  2FQ2 A;  2KGA A;  1RNI A;  1VQ9 P;  4PH0 A;  4IZ6 A;  5CZD B;  2KW2 A;  2FAE A;  1IMQ A;  4MRT C;  1DNY A;  3U43 A;  2LOL A;  2M5R A;  4U0B A;  3GZL A;  3CC7 P;  3I56 P;  2EG5 A;  2FVF A;  2MF4 A;  3G4S P;  4CA3 A;  2L6E A;  2K94 A;  4U0F A;  1E0H A;  4IPY A;  4XFX A;  2X2B A;  1VQ7 P;  3LMO A;  5F2O A;  1HY8 A;  2EIA A;  2AF8 A;  1S72 P;  3CMA P;  1YJN P;  2EFJ A;  1M6N A;  2XZ1 C;  2MR8 A;  2PY8 A;  3G1G A;  3DS1 A;  2M8L A;  4H2Y C;  1W2B O;  2MY5 A;  1NQ4 A;  1KC8 Q;  1UJZ A;  3NTE A;  2JO0 A;  4XFZ A;  4M0I A;  3G26 A;  3LRY A;  3CCU P;  1N8R Q;  2MR7 A;  3G29 A;  2LF4 A;  2KOR A;  1QVG O;  3B5I A;  2JBG A;  3CCQ P;  1DV5 A;  4U0E A;  1F80 D;  4BPF A;  5EW5 E;  2K0Y A;  2L4B A;  2GDW A;  3HZQ A;  3G1I A;  3G6E P;  3HYB A;  5F2K A;  4PXH B;  2QA4 P;  2LPK A;  1E6J P;  3EJD A;  3DS0 A;  1A43 A;  1MZ8 A;  5HGO A;  2K92 A;  3DS2 A;  2PEJ A;  2P9X A;  2KR5 A;  2M8P A;  1RO0 A;  2VLP A;  3RG2 A;  4QKO A;  1YIT P;  3CC2 P;  2EHT A;  4XRO A;  1IUQ A;  2JU1 A;  4GR6 A;  1L0H A;  1D1D A;  2KOO A;  1YIJ P;  1KQS O;  1VQM P;  2JYG A;  2XXM A;  2VSQ A;  2K93 A;  1EIA A;  1M6E X;  3VRL C;  4PWV B;  2LTE A;  2PEO A;  2L22 A;  1KLP A;  3E2D A;  1VQ5 P;  1M1K Q;  2AFE A;  3H0D A;  2PEQ A;  4HKG A;  2VLO A;  2N5H A;  1GXH A;  2QNW A;  1M90 Q;  1VQN P;  4NEO A;  1OR5 A;  1Q81 Q;  5EJD A;  3RG6 C;  2XT1 A;  4U0D A;  1VQL P;  2CQ8 A;  2JAZ A;  1VKU A;  2KOS A;  3CCJ P;  2XV6 A;  2GZE A;  3CE7 A;  2MVV A;  2GZG A;  2JB0 A;  2N5I A;  2KG8 A;  2KOD A;  4COP A;  1BAJ A;  2OAR A;  5KP6 B;  2VLN A;  3DS5 A;  2PNG A;  4XRQ A;  1M74 A;  2N50 A;  2JGP A;  2FQ1 A;  3G28 A;  1FR2 A;  1ACP A;  3DS3 A;  3CC4 P;  4UHP B;  4BPH A;  2K0D X;  2JU2 A;  2N98 A;  5I4T G;  1VQK P;  4GR2 A;  3I55 P;  4U0C A;  5BS2 A;  2M8N A;  2BUO A;  2LIU A;  2FQ0 A;  1AF8 A;  2ROQ A;  3GJN A;  4WYM A;  2PEI A;  1UNK A;  1A8O A;  2AVA A;  2GYK A;  2GZI A;  3G21 A;  1QVF O;  2EHS A;  2MD9 A;  1EMV A;  3P05 A;  5HV8 A;  2MVU A;  1RO2 A;  2K5X A;  2FAD A;  2WPT A;  2QEX P;  2KOP A;  3B4Q A;  1Z6M A;  3H47 A;  2PEK A;  2GZF A;  4U0A A;  1HQB A;  1Q7Y Q;  1KD1 Q;  1ZMB A;  1QRJ A;  3MGE A;  2KGD A;  1VQ8 P;  2KOQ A;  7CEI A;  3H4E A;  2FVA A;  3DTJ A;  5F2N A;  3CPW O;  3CCV P;  1Q82 Q;  2LIW A;  1GXG A;  1YHQ P;  1VQO P;  3CCE P;  2GDY A;  2KGE A;  1VQ6 P;  2KWL A;  1T8K A;  2KG9 A;  4BPG A;  2JYL A;  1Q86 Q;  3EJE A;  1VHN A;  1VQP P;  5KP7 B;  2K2Q A;  2ERH A;  2L0Q A;  2N6Z A;  3CCM P;  3G71 P;  5BS1 A;  2VLQ A;  1K8A Q;  3G0V A;  1X3O A;  2LML A;  1EOQ A;  5HVC A;  2DNW A;  3DS4 A;  3CCR P;  2N6Y A;  1AUM A;  3M1M A;  3NY7 B;  1K73 Q;  3DPH A;  1ZNV A;  1NJI Q;  4COC A;  3CXC O;  4DG9 A;  2LKI A;  2DGY A; 
#chains in the Genus database with same CATH homology
 2GYK A;  2GZI A;  1AYI A;  2ERH A;  1GXH A;  1E0H A;  1IMP A;  2VLN A;  1UJZ A;  3GKL C;  2VLQ A;  1EMV A;  2VLP A;  4F37 A;  1GXG A;  1IMQ A;  1BXI A;  4QKO A;  3U43 A;  2JAZ A;  1CEI A;  2K5X A;  7CEI A;  2WPT A;  2NO8 A;  2GZE A;  1FR2 A;  3GJN A;  2JBG A;  2GZG A;  1ZNV A;  1MZ8 A;  4UHP B;  2JB0 A;  1UNK A;  2GZJ A;  2K0D X;  5EW5 E;  2GZF A;  2VLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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