2K7XA

Solution structure of c-terminal domain of sars-cov main protease
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
120
structure length
120
Chain Sequence
DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Sars coronavirus
publication title C-terminal domain of SARS-CoV main protease can form a 3D domain-swapped dimer.
pubmed doi rcsb
molecule keywords SARS-CoV main protease
total genus 37
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2008-08-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1840.10 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3 2k7xA00
4YLUA 3E91A 1Q2WA 2AMPA 3F9EA 3EAJA 5C5NA 2QCYA 2ALVA 3SNCA 3F9GA 3FZDA 2YNAA 2Q6GA 5HYOA 2GT7A 2ZU2A 4TWYA 1UJ1A 1UK4A 2BX4A 4WMFA 1UK3A 2AMQA 2YNBA 3M3SA 2Q6FA 2Z3CA 2DUCA 3TLOA 3EBNA 2GX4A 4WMDA 4HI3A 2Z94A 4YOGA 2QC2A 3TNSA 2GZ7A 3IWMA 3EA8A 2Q6DA 4TWWA 3D62A 1WOFA 1Z1IA 2C3SA 3VB5A 4YO9A 2Z3EA 2HOBA 2PWXA 2ZU5A 3EA7A 3SNAA 3SNDA 2Z9KA 3F9FA 2GTBA 4WY3A 3M3VA 2Z9LA 3TNTA 3AW1A 2V6NA 2A5IA 3SZNA 2GZ8A 4RSPA 2Z9GA 5EU8A 3VB4A 3TITA 2Z3DA 3EA9A 1P9UA 3AVZA 4YOIA 3SNBA 2VJ1A 1LVOA 1P9SA 3AW0A 3VB3A 2K7XA 5GWZA 3VB7A 2A5KA 2GT8A 4ZROA 2Z9JA 2D2DA 1Z1JA 2H2ZA 4ZUHA 5C5OA 2OP9A 3M3TA 3VB6A 2AMDA 1UK2A 3V3MA 2LIZA 4F49A 2GZ9A 4MDSA 4YOJA 3D23A 2QIQA 4WMEA 2ZU4A 3TIUA 3F9HA 3ATWA 4XFQA 2A5AA 2BX3A 3SN8A 5B6OA 3SNEA 5C3NA
chains in the Genus database with same CATH superfamily
4YLUA 3E91A 1Q2WA 2AMPA 3F9EA 3EAJA 5C5NA 2QCYA 2ALVA 3SNCA 3F9GA 3FZDA 2YNAA 2Q6GA 5HYOA 2GT7A 2ZU2A 4TWYA 1UJ1A 1UK4A 2BX4A 4WMFA 1UK3A 2AMQA 2YNBA 3M3SA 2Q6FA 2Z3CA 2DUCA 3TLOA 3EBNA 2GX4A 4WMDA 4HI3A 2Z94A 4YOGA 2QC2A 3TNSA 2GZ7A 3IWMA 3EA8A 2Q6DA 4TWWA 3D62A 1WOFA 1Z1IA 2C3SA 3VB5A 4YO9A 2Z3EA 2HOBA 2PWXA 2ZU5A 3EA7A 3SNAA 3SNDA 2Z9KA 3F9FA 2GTBA 4WY3A 3M3VA 2Z9LA 3TNTA 3AW1A 2V6NA 2A5IA 3SZNA 2GZ8A 4RSPA 2Z9GA 5EU8A 3VB4A 3TITA 2Z3DA 3EA9A 1P9UA 3AVZA 4YOIA 3SNBA 2VJ1A 1LVOA 1P9SA 3AW0A 3VB3A 2K7XA 5GWZA 3VB7A 2A5KA 2GT8A 4ZROA 2Z9JA 2D2DA 1Z1JA 2H2ZA 4ZUHA 5C5OA 2OP9A 3M3TA 3VB6A 2AMDA 1UK2A 3V3MA 2LIZA 4F49A 2GZ9A 4MDSA 4YOJA 3D23A 2QIQA 4WMEA 2ZU4A 3TIUA 3F9HA 3ATWA 4XFQA 2A5AA 2BX3A 3SN8A 5B6OA 3SNEA 5C3NA
chains in the Genus database with same CATH topology
4YLUA 3E91A 1Q2WA 2AMPA 3F9EA 3EAJA 5C5NA 2QCYA 2ALVA 3SNCA 3F9GA 3FZDA 2YNAA 2Q6GA 5HYOA 2GT7A 2ZU2A 4TWYA 1UJ1A 1UK4A 2BX4A 4WMFA 1UK3A 2AMQA 2YNBA 3M3SA 2Q6FA 2Z3CA 2DUCA 3TLOA 3EBNA 2GX4A 4WMDA 4HI3A 2Z94A 4YOGA 2QC2A 3TNSA 2GZ7A 3IWMA 3EA8A 2Q6DA 4TWWA 3D62A 1WOFA 1Z1IA 2C3SA 3VB5A 4YO9A 2Z3EA 2HOBA 2PWXA 2ZU5A 3EA7A 3SNAA 3SNDA 2Z9KA 3F9FA 2GTBA 4WY3A 3M3VA 2Z9LA 3TNTA 3AW1A 2V6NA 2A5IA 3SZNA 2GZ8A 4RSPA 2Z9GA 5EU8A 3VB4A 3TITA 2Z3DA 3EA9A 1P9UA 3AVZA 4YOIA 3SNBA 2VJ1A 1LVOA 1P9SA 3AW0A 3VB3A 2K7XA 5GWZA 3VB7A 2A5KA 2GT8A 4ZROA 2Z9JA 2D2DA 1Z1JA 2H2ZA 4ZUHA 5C5OA 2OP9A 3M3TA 3VB6A 2AMDA 1UK2A 3V3MA 2LIZA 4F49A 2GZ9A 4MDSA 4YOJA 3D23A 2QIQA 4WMEA 2ZU4A 3TIUA 3F9HA 3ATWA 4XFQA 2A5AA 2BX3A 3SN8A 5B6OA 3SNEA 5C3NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YLU A;  3E91 A;  1Q2W A;  2AMP A;  3F9E A;  3EAJ A;  5C5N A;  2QCY A;  2ALV A;  3SNC A;  3F9G A;  3FZD A;  2YNA A;  2Q6G A;  5HYO A;  2GT7 A;  2ZU2 A;  4TWY A;  1UJ1 A;  1UK4 A;  2BX4 A;  4WMF A;  1UK3 A;  2AMQ A;  2YNB A;  3M3S A;  2Q6F A;  2Z3C A;  2DUC A;  3TLO A;  3EBN A;  2GX4 A;  4WMD A;  4HI3 A;  2Z94 A;  4YOG A;  2QC2 A;  3TNS A;  2GZ7 A;  3IWM A;  3EA8 A;  2Q6D A;  4TWW A;  3D62 A;  1WOF A;  1Z1I A;  2C3S A;  3VB5 A;  4YO9 A;  2Z3E A;  2HOB A;  2PWX A;  2ZU5 A;  3EA7 A;  3SNA A;  3SND A;  2Z9K A;  3F9F A;  2GTB A;  4WY3 A;  3M3V A;  2Z9L A;  3TNT A;  3AW1 A;  2V6N A;  2A5I A;  3SZN A;  2GZ8 A;  4RSP A;  2Z9G A;  5EU8 A;  3VB4 A;  3TIT A;  2Z3D A;  3EA9 A;  1P9U A;  3AVZ A;  4YOI A;  3SNB A;  2VJ1 A;  1LVO A;  1P9S A;  3AW0 A;  3VB3 A;  2K7X A;  5GWZ A;  3VB7 A;  2A5K A;  2GT8 A;  4ZRO A;  2Z9J A;  2D2D A;  1Z1J A;  2H2Z A;  4ZUH A;  5C5O A;  2OP9 A;  3M3T A;  3VB6 A;  2AMD A;  1UK2 A;  3V3M A;  2LIZ A;  4F49 A;  2GZ9 A;  4MDS A;  4YOJ A;  3D23 A;  2QIQ A;  4WME A;  2ZU4 A;  3TIU A;  3F9H A;  3ATW A;  4XFQ A;  2A5A A;  2BX3 A;  3SN8 A;  5B6O A;  3SNE A;  5C3N A; 
#chains in the Genus database with same CATH topology
 4YLU A;  3E91 A;  1Q2W A;  2AMP A;  3F9E A;  3EAJ A;  5C5N A;  2QCY A;  2ALV A;  3SNC A;  3F9G A;  3FZD A;  2YNA A;  2Q6G A;  5HYO A;  2GT7 A;  2ZU2 A;  4TWY A;  1UJ1 A;  1UK4 A;  2BX4 A;  4WMF A;  1UK3 A;  2AMQ A;  2YNB A;  3M3S A;  2Q6F A;  2Z3C A;  2DUC A;  3TLO A;  3EBN A;  2GX4 A;  4WMD A;  4HI3 A;  2Z94 A;  4YOG A;  2QC2 A;  3TNS A;  2GZ7 A;  3IWM A;  3EA8 A;  2Q6D A;  4TWW A;  3D62 A;  1WOF A;  1Z1I A;  2C3S A;  3VB5 A;  4YO9 A;  2Z3E A;  2HOB A;  2PWX A;  2ZU5 A;  3EA7 A;  3SNA A;  3SND A;  2Z9K A;  3F9F A;  2GTB A;  4WY3 A;  3M3V A;  2Z9L A;  3TNT A;  3AW1 A;  2V6N A;  2A5I A;  3SZN A;  2GZ8 A;  4RSP A;  2Z9G A;  5EU8 A;  3VB4 A;  3TIT A;  2Z3D A;  3EA9 A;  1P9U A;  3AVZ A;  4YOI A;  3SNB A;  2VJ1 A;  1LVO A;  1P9S A;  3AW0 A;  3VB3 A;  2K7X A;  5GWZ A;  3VB7 A;  2A5K A;  2GT8 A;  4ZRO A;  2Z9J A;  2D2D A;  1Z1J A;  2H2Z A;  4ZUH A;  5C5O A;  2OP9 A;  3M3T A;  3VB6 A;  2AMD A;  1UK2 A;  3V3M A;  2LIZ A;  4F49 A;  2GZ9 A;  4MDS A;  4YOJ A;  3D23 A;  2QIQ A;  4WME A;  2ZU4 A;  3TIU A;  3F9H A;  3ATW A;  4XFQ A;  2A5A A;  2BX3 A;  3SN8 A;  5B6O A;  3SNE A;  5C3N A; 
#chains in the Genus database with same CATH homology
 4YLU A;  3E91 A;  1Q2W A;  2AMP A;  3F9E A;  3EAJ A;  5C5N A;  2QCY A;  2ALV A;  3SNC A;  3F9G A;  3FZD A;  2YNA A;  2Q6G A;  5HYO A;  2GT7 A;  2ZU2 A;  4TWY A;  1UJ1 A;  1UK4 A;  2BX4 A;  4WMF A;  1UK3 A;  2AMQ A;  2YNB A;  3M3S A;  2Q6F A;  2Z3C A;  2DUC A;  3TLO A;  3EBN A;  2GX4 A;  4WMD A;  4HI3 A;  2Z94 A;  4YOG A;  2QC2 A;  3TNS A;  2GZ7 A;  3IWM A;  3EA8 A;  2Q6D A;  4TWW A;  3D62 A;  1WOF A;  1Z1I A;  2C3S A;  3VB5 A;  4YO9 A;  2Z3E A;  2HOB A;  2PWX A;  2ZU5 A;  3EA7 A;  3SNA A;  3SND A;  2Z9K A;  3F9F A;  2GTB A;  4WY3 A;  3M3V A;  2Z9L A;  3TNT A;  3AW1 A;  2V6N A;  2A5I A;  3SZN A;  2GZ8 A;  4RSP A;  2Z9G A;  5EU8 A;  3VB4 A;  3TIT A;  2Z3D A;  3EA9 A;  1P9U A;  3AVZ A;  4YOI A;  3SNB A;  2VJ1 A;  1LVO A;  1P9S A;  3AW0 A;  3VB3 A;  2K7X A;  5GWZ A;  3VB7 A;  2A5K A;  2GT8 A;  4ZRO A;  2Z9J A;  2D2D A;  1Z1J A;  2H2Z A;  4ZUH A;  5C5O A;  2OP9 A;  3M3T A;  3VB6 A;  2AMD A;  1UK2 A;  3V3M A;  2LIZ A;  4F49 A;  2GZ9 A;  4MDS A;  4YOJ A;  3D23 A;  2QIQ A;  4WME A;  2ZU4 A;  3TIU A;  3F9H A;  3ATW A;  4XFQ A;  2A5A A;  2BX3 A;  3SN8 A;  5B6O A;  3SNE A;  5C3N A; 
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similar chains in the pdb database (?% sequence similarity)

 
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