2K8EA

Solution nmr structure of protein of unknown function yegp from e. coli. ontario center for structural proteomics target ec0640_1_123 northeast structural genomics consortium target et102.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
116
structure length
116
Chain Sequence
GVIMAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNTGSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of protein yegP from Escherichia Coli.
rcsb
molecule keywords UPF0339 protein yegP
source organism Escherichia coli
molecule tags Structural genomics, unknown function
total genus 31
structure length 116
sequence length 116
ec nomenclature
pdb deposition date 2008-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k8eA00
2K8EA 2K49A
chains in the Genus database with same CATH superfamily
5D3WA 1UNQA 1UNPA 2YT0A 4MK0A 2J0JA 5C79A 1AQCA 2ZKMX 4GZUA 1P3RA 4NSWA 1ISNA 2X18A 2CAYA 2I1KA 3A8PA 3KY9A 2CRFA 3CIKA 3ZVRA 1FHXA 1X11A 3NWDA 5JP4A 1GC7A 2M14A 2Z13A 1WGQA 2QKMA 1EVHA 2UZRA 1UNRA 3TO1A 1U29A 4K81A 1MK7B 3QIJA 4Z2MB 4CHJA 1BWNA 3ODWA 5GOWB 2NMBA 1MKEA 2MKRA 1X1GA 2YT2A 1XR0B 2Z0PA 2D9WA 5FI1A 3ML4A 1LW3A 1LB1A 4HB3B 3ODXA 1SHCA 1ZC4B 4Y94A 4ZRJA 2P0DA 1M7EA 2E2XA 2K49A 3AJ4A 4DBBA 1DDMA 2LOXA 3NW8A 1FGZA 2K8EA 3DCXA 5KQ4A 2RSGA 5FI0A 1FOEA 3U7DA 1V89A 2I1JA 4QJ4B 2W2XD 1KZ7A 3SNHA 4IFSA 4A5KA 1QC6A 4GMVA 4CHMA 3PVLA 1ZC3B 1T77A 5HE2A 2KCJA 4WSFA 3WYFB 3A58A 2J0MA 3X23A 5CLQB 4D0NB 3N7CA 5C5BA 2K00A 3F5RA 2M38A 1N3HA 4MY6A 3WA0A 1MI1A 2KIGA 2CY5A 1BAKA 4KVGB 3BINA 3TVVA 2D10A 2DKPA 3QBVB 4HAYB 5D3XA 4H8SA 4F7UP 1MIXA 2DKQA 4YONA 1OMWA 3M1IB 4GXBA 1AWEA 4HATB 4HAWB 5C16A 3D8EA 5CLLB 4ZRIA 1H10A 4CSQA 2RUKB 2DFKA 2RNRB 4TKNA 3OANA 1FHWA 1K5DB 2D9VA 3ULCA 1V61A 4K17A 1IRSA 2D2QA 2CODA 2NBVA 1RRPB 2D9YA 3KZ1A 4Z2NA 3OHMB 2ROZB 2AEHA 2R2YA 2GS0A 4GNKB 1KI1B 2D9XA 1Q67A 3B77A 2YSZA 3PP2A 2Z59A 5I2SA 1EGXA 4HAUB 3HSAA 4A6HA 4L6EA 3ODOA 2KIEA 1PMSA 2HTHB 2ZPYA 1TXDA 3NSUA 3DXEA 4KAXB 3FSSA 1WVHA 2IYBA 3PVWA 1XCGA 3U12A 2GJYA 1PLSA 4IAPA 1WI1A 1MAIA 1BTKA 2LOZA 2EC1A 2EMTA 3T06A 1DROA 4HDOA 2MWNB 5L81A 4P7IA 3SO6A 5JHHA 3GYOA 5DIFB 3MPXA 4OSNA 2D11A 3SUZA 4YL8A 2DX5A 4HAZB 2LKOA 4C0AA 1M7RA 3KRXA 4F7HA 4QJ3B 1Y5OA 1J0WA 2COCA 2L2IA 1WG7A 2FJLA 4DXAB 2QKLA 4DIXA 3FEHA 2GCJA 3A98B 4CYEA 2Q13A 5JLJB 4GPTB 4F7GA 2J59M 3IVFA 4HB4B 3KRWA 5HE1A 3TFMA 5C6RA 3PEGA 2ROVA 4EMOA 2HE7A 3RCPA 2W2XC 1FGYA 2ELAA 2MFQA 2DTCA 2H7DA 2D9ZA 2KUPA 1ZM0A 1Y19B 3HW2B 4BBKA 4KHAA 4A6FA 5LG4B 2K2JA 1H4RA 1XD4A 3NWAA 1W1GA 4K2OA 5KCVA 4EJNA 2UZSA 1V5MA 1QQGA 2V76A 4GN1A 5M4YB 2JP2A 3ULBA 2RLOA 2DN6A 2W2WA 2DYNA 1DDVA 1MIZB 4WVFB 5C5BB 4GMXB 4HDQA 3HIEA 1P6SA 4KHBA 2KUQA 3QWMA 5EFXA 1WJ1A 2L1CA 3PSCA 1U27A 5LONB 4TYZA 2K2UA 1V5UA 1UPRA 1I7AA 2R0DA 1W1HA 2COAA 2GCLA 2OTXA 3CXBB 4ZRKA 5D3YA 3TCAA 3LJUX 1RJ2A 1UPQA 2YS5A 2R09A 1KZGA 1EAZA 4MT7A 1TJ6A 5IRSA 1MPHA 3O96A 4NY0A 2YF0A 1P5TA 2VKIA 1FAOA 2MDXA 3AU4A 1GC6A 5LOPB 1I2HA 2VSZA 1TQZA 5DHAB 3HK0A 1NU2A 3F0WA 3FM8C 3MDBC 4HB2B 2IFSA 2DYQA 4HHVA 3PG7A 2NZ8B 1XODA 1UEFA 3P7ZA 2Z0QA 2Z0OA 2N23A 5I2MA 5DHFB 4HB0B 1ZYIA 1X86A 4XWXA 1NTVA 2YS3A 4OT1A 2DLWA 3VIAA 1X1FA 1U5EA 2I5CA 3VOQA 4L1RA 2H7EA 2BCJA 2J0KA 4QXAB 1V88A 2EJ8A 3KSYA 1DBHA 1WGUA 1MK9B 2DHIA 1E5WA 4KHOA 4HAVB 3BJIA 2KGXB 2EMSA 4A6KA 4DX90 3FVCA 1DYNA 2UVMA 5J3TA 2DHJA 1ZSQA 2N0YA 2COFA 3A8QA 2DX1A 5D27A 2YS1A 3TW1A 2GUMA 1BTNA 1OY2A 1FHOA 4QJ5B 3G9WA 2YT1A 2RGNB 4D6WA 1NI2A 5HE3A 1DDWA 2LULA 1X05A 2ADZA 2DHKA 5KQ1A 3DXCA 1U5GA 4PQ0A 4HAXB 3DXDA 2LYDA 1U5FA 1PFJA 2DA0A 2G35A 1XKEA 4K2PA 4WJ7A 4EKUA 3GYPA 1FB8A 2RRFA 2Z14A 4B6HA 1XX0A 3SV1A 2Y7BA 2XQNM 2Y8GA 2CY4A 2Z4DA 1GG3A 3D8FA 4IOYX 2ELBA 1J19A 2I5FA 1WJMA 2YVCA 5D3VA 4HSIA 2VRWB 4A6FB 2RVBB 1EF1A 4GOUA 5DH9B 2FJUB 2PZ1A 3HQCA 1B55A 1U5DA 2Y8FA 4PNKA 3AU5A 3PVUA 1V5PA 3SYXA 5J3YA 5JHGA 1U2BA 3UZTA 4KHBB 2P0HA 2KR0A 3U8ZA 1NTYA 3ZDTA 2D4QA 1ZVRA 3NWFA 1OQNA 2P0FA 1SGHA 2LG1A 4DX8A 2OQBA 2AL6A 2P8VA 1K5GB 1W1DA 3V5WA 1Z87A 3D8DA 3P6AA 5DI9B 3PZDA 5HE0A 5J3QA 2YRYA
chains in the Genus database with same CATH topology
2R2YA 5IRSA 4IOYX 4PQ0A 4GNKB 4CSQA 4KHBB 5I2MA 3FVCA 3HIEA 2KR0A 4KHBA 2KUQA 4QJ3B 4HSIA 4QJ4B 3U12A 2KIGA 3NWFA 5I2SA 2Z59A 4KHAA 5LG4B 1ZYIA 2YT2A 2ZKMX 4DIXA 4GOUA 4IFSA 3NWAA 3TW1A 2GCJA 2FJUB 2GUMA 4OT1A 3TVVA 3GYPA 4QJ5B 2RRFA 2KIEA 4L1RA 2Z14A 3NWDA 4D6WA 3GYOA 2GCLA 5M4YB 3A58A 2K49A 2Z13A 4QXAB 4OSNA 2NBVA 3FSSA 3NW8A 4Z2NA 2K8EA 3TO1A 3OHMB 4Z2MB 4KHOA 2Z4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K8E A;  2K49 A; 
#chains in the Genus database with same CATH topology
 5D3W A;  1UNQ A;  1UNP A;  2YT0 A;  4MK0 A;  2J0J A;  5C79 A;  1AQC A;  2ZKM X;  4GZU A;  1P3R A;  4NSW A;  1ISN A;  2X18 A;  2CAY A;  2I1K A;  3A8P A;  3KY9 A;  2CRF A;  3CIK A;  3ZVR A;  1FHX A;  1X11 A;  3NWD A;  5JP4 A;  1GC7 A;  2M14 A;  2Z13 A;  1WGQ A;  2QKM A;  1EVH A;  2UZR A;  1UNR A;  3TO1 A;  1U29 A;  4K81 A;  1MK7 B;  3QIJ A;  4Z2M B;  4CHJ A;  1BWN A;  3ODW A;  5GOW B;  2NMB A;  1MKE A;  2MKR A;  1X1G A;  2YT2 A;  1XR0 B;  2Z0P A;  2D9W A;  5FI1 A;  3ML4 A;  1LW3 A;  1LB1 A;  4HB3 B;  3ODX A;  1SHC A;  1ZC4 B;  4Y94 A;  4ZRJ A;  2P0D A;  1M7E A;  2E2X A;  2K49 A;  3AJ4 A;  4DBB A;  1DDM A;  2LOX A;  3NW8 A;  1FGZ A;  2K8E A;  3DCX A;  5KQ4 A;  2RSG A;  5FI0 A;  1FOE A;  3U7D A;  1V89 A;  2I1J A;  4QJ4 B;  2W2X D;  1KZ7 A;  3SNH A;  4IFS A;  4A5K A;  1QC6 A;  4GMV A;  4CHM A;  3PVL A;  1ZC3 B;  1T77 A;  5HE2 A;  2KCJ A;  4WSF A;  3WYF B;  3A58 A;  2J0M A;  3X23 A;  5CLQ B;  4D0N B;  3N7C A;  5C5B A;  2K00 A;  3F5R A;  2M38 A;  1N3H A;  4MY6 A;  3WA0 A;  1MI1 A;  2KIG A;  2CY5 A;  1BAK A;  4KVG B;  3BIN A;  3TVV A;  2D10 A;  2DKP A;  3QBV B;  4HAY B;  5D3X A;  4H8S A;  4F7U P;  1MIX A;  2DKQ A;  4YON A;  1OMW A;  3M1I B;  4GXB A;  1AWE A;  4HAT B;  4HAW B;  5C16 A;  3D8E A;  5CLL B;  4ZRI A;  1H10 A;  4CSQ A;  2RUK B;  2DFK A;  2RNR B;  4TKN A;  3OAN A;  1FHW A;  1K5D B;  2D9V A;  3ULC A;  1V61 A;  4K17 A;  1IRS A;  2D2Q A;  2COD A;  2NBV A;  1RRP B;  2D9Y A;  3KZ1 A;  4Z2N A;  3OHM B;  2ROZ B;  2AEH A;  2R2Y A;  2GS0 A;  4GNK B;  1KI1 B;  2D9X A;  1Q67 A;  3B77 A;  2YSZ A;  3PP2 A;  2Z59 A;  5I2S A;  1EGX A;  4HAU B;  3HSA A;  4A6H A;  4L6E A;  3ODO A;  2KIE A;  1PMS A;  2HTH B;  2ZPY A;  1TXD A;  3NSU A;  3DXE A;  4KAX B;  3FSS A;  1WVH A;  2IYB A;  3PVW A;  1XCG A;  3U12 A;  2GJY A;  1PLS A;  4IAP A;  1WI1 A;  1MAI A;  1BTK A;  2LOZ A;  2EC1 A;  2EMT A;  3T06 A;  1DRO A;  4HDO A;  2MWN B;  5L81 A;  4P7I A;  3SO6 A;  5JHH A;  3GYO A;  5DIF B;  3MPX A;  4OSN A;  2D11 A;  3SUZ A;  4YL8 A;  2DX5 A;  4HAZ B;  2LKO A;  4C0A A;  1M7R A;  3KRX A;  4F7H A;  4QJ3 B;  1Y5O A;  1J0W A;  2COC A;  2L2I A;  1WG7 A;  2FJL A;  4DXA B;  2QKL A;  4DIX A;  3FEH A;  2GCJ A;  3A98 B;  4CYE A;  2Q13 A;  5JLJ B;  4GPT B;  4F7G A;  2J59 M;  3IVF A;  4HB4 B;  3KRW A;  5HE1 A;  3TFM A;  5C6R A;  3PEG A;  2ROV A;  4EMO A;  2HE7 A;  3RCP A;  2W2X C;  1FGY A;  2ELA A;  2MFQ A;  2DTC A;  2H7D A;  2D9Z A;  2KUP A;  1ZM0 A;  1Y19 B;  3HW2 B;  4BBK A;  4KHA A;  4A6F A;  5LG4 B;  2K2J A;  1H4R A;  1XD4 A;  3NWA A;  1W1G A;  4K2O A;  5KCV A;  4EJN A;  2UZS A;  1V5M A;  1QQG A;  2V76 A;  4GN1 A;  5M4Y B;  2JP2 A;  3ULB A;  2RLO A;  2DN6 A;  2W2W A;  2DYN A;  1DDV A;  1MIZ B;  4WVF B;  5C5B B;  4GMX B;  4HDQ A;  3HIE A;  1P6S A;  4KHB A;  2KUQ A;  3QWM A;  5EFX A;  1WJ1 A;  2L1C A;  3PSC A;  1U27 A;  5LON B;  4TYZ A;  2K2U A;  1V5U A;  1UPR A;  1I7A A;  2R0D A;  1W1H A;  2COA A;  2GCL A;  2OTX A;  3CXB B;  4ZRK A;  5D3Y A;  3TCA A;  3LJU X;  1RJ2 A;  1UPQ A;  2YS5 A;  2R09 A;  1KZG A;  1EAZ A;  4MT7 A;  1TJ6 A;  5IRS A;  1MPH A;  3O96 A;  4NY0 A;  2YF0 A;  1P5T A;  2VKI A;  1FAO A;  2MDX A;  3AU4 A;  1GC6 A;  5LOP B;  1I2H A;  2VSZ A;  1TQZ A;  5DHA B;  3HK0 A;  1NU2 A;  3F0W A;  3FM8 C;  3MDB C;  4HB2 B;  2IFS A;  2DYQ A;  4HHV A;  3PG7 A;  2NZ8 B;  1XOD A;  1UEF A;  3P7Z A;  2Z0Q A;  2Z0O A;  2N23 A;  5I2M A;  5DHF B;  4HB0 B;  1ZYI A;  1X86 A;  4XWX A;  1NTV A;  2YS3 A;  4OT1 A;  2DLW A;  3VIA A;  1X1F A;  1U5E A;  2I5C A;  3VOQ A;  4L1R A;  2H7E A;  2BCJ A;  2J0K A;  4QXA B;  1V88 A;  2EJ8 A;  3KSY A;  1DBH A;  1WGU A;  1MK9 B;  2DHI A;  1E5W A;  4KHO A;  4HAV B;  3BJI A;  2KGX B;  2EMS A;  4A6K A;  4DX9 0;  3FVC A;  1DYN A;  2UVM A;  5J3T A;  2DHJ A;  1ZSQ A;  2N0Y A;  2COF A;  3A8Q A;  2DX1 A;  5D27 A;  2YS1 A;  3TW1 A;  2GUM A;  1BTN A;  1OY2 A;  1FHO A;  4QJ5 B;  3G9W A;  2YT1 A;  2RGN B;  4D6W A;  1NI2 A;  5HE3 A;  1DDW A;  2LUL A;  1X05 A;  2ADZ A;  2DHK A;  5KQ1 A;  3DXC A;  1U5G A;  4PQ0 A;  4HAX B;  3DXD A;  2LYD A;  1U5F A;  1PFJ A;  2DA0 A;  2G35 A;  1XKE A;  4K2P A;  4WJ7 A;  4EKU A;  3GYP A;  1FB8 A;  2RRF A;  2Z14 A;  4B6H A;  1XX0 A;  3SV1 A;  2Y7B A;  2XQN M;  2Y8G A;  2CY4 A;  2Z4D A;  1GG3 A;  3D8F A;  4IOY X;  2ELB A;  1J19 A;  2I5F A;  1WJM A;  2YVC A;  5D3V A;  4HSI A;  2VRW B;  4A6F B;  2RVB B;  1EF1 A;  4GOU A;  5DH9 B;  2FJU B;  2PZ1 A;  3HQC A;  1B55 A;  1U5D A;  2Y8F A;  4PNK A;  3AU5 A;  3PVU A;  1V5P A;  3SYX A;  5J3Y A;  5JHG A;  1U2B A;  3UZT A;  4KHB B;  2P0H A;  2KR0 A;  3U8Z A;  1NTY A;  3ZDT A;  2D4Q A;  1ZVR A;  3NWF A;  1OQN A;  2P0F A;  1SGH A;  2LG1 A;  4DX8 A;  2OQB A;  2AL6 A;  2P8V A;  1K5G B;  1W1D A;  3V5W A;  1Z87 A;  3D8D A;  3P6A A;  5DI9 B;  3PZD A;  5HE0 A;  5J3Q A;  2YRY A; 
#chains in the Genus database with same CATH homology
 2R2Y A;  5IRS A;  4IOY X;  4PQ0 A;  4GNK B;  4CSQ A;  4KHB B;  5I2M A;  3FVC A;  3HIE A;  2KR0 A;  4KHB A;  2KUQ A;  4QJ3 B;  4HSI A;  4QJ4 B;  3U12 A;  2KIG A;  3NWF A;  5I2S A;  2Z59 A;  4KHA A;  5LG4 B;  1ZYI A;  2YT2 A;  2ZKM X;  4DIX A;  4GOU A;  4IFS A;  3NWA A;  3TW1 A;  2GCJ A;  2FJU B;  2GUM A;  4OT1 A;  3TVV A;  3GYP A;  4QJ5 B;  2RRF A;  2KIE A;  4L1R A;  2Z14 A;  3NWD A;  4D6W A;  3GYO A;  2GCL A;  5M4Y B;  3A58 A;  2K49 A;  2Z13 A;  4QXA B;  4OSN A;  2NBV A;  3FSS A;  3NW8 A;  4Z2N A;  2K8E A;  3TO1 A;  3OHM B;  4Z2M B;  4KHO A;  2Z4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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