2K8EA

Solution nmr structure of protein of unknown function yegp from e. coli. ontario center for structural proteomics target ec0640_1_123 northeast structural genomics consortium target et102.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
116
structure length
116
Chain Sequence
GVIMAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNTGSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0339 protein yegP
publication title Solution structure of protein yegP from Escherichia Coli.
rcsb
source organism Escherichia coli
total genus 31
structure length 116
sequence length 116
ec nomenclature
pdb deposition date 2008-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k8eA00
2K8EA 2K49A
chains in the Genus database with same CATH superfamily
2Z0QA 4HAWB 1TQZA 4CHMA 3P7ZA 5JP4A 1BWNA 5KQ1A 1U2BA 2W2XC 3NSUA 2K8EA 1XCGA 4HB0B 3PVWA 2D9WA 2HTHB 2ZPYA 4PQ0A 4HHVA 3ULCA 1IRSA 1K5GB 4QJ5B 1FGYA 2VKIA 1MKEA 1RRPB 3D8EA 3AJ4A 1FB8A 2DLWA 4CHJA 1X86A 1MAIA 1MPHA 1BTKA 2DYQA 1WGUA 1M7RA 4HAYB 4DX90 1NU2A 1TXDA 1KZGA 3PG7A 1QC6A 3SYXA 2NZ8B 3FVCA 4HATB 4HDQA 2UVMA 1W1GA 2RGNB 4B6HA 3HQCA 2DX5A 2AL6A 1P3RA 2RRFA 4ZRIA 3TW1A 1SGHA 2DKQA 3NWDA 4C0AA 2GCLA 1W1DA 3DXCA 2CY4A 3QBVB 4K2OA 4NY0A 3D8DA 2D9YA 4MK0A 1U5EA 2J0MA 2YT1A 2COAA 1LW3A 1DYNA 2CRFA 2M14A 1UNPA 1Y5OA 4CYEA 1H10A 2I1JA 3KRWA 2K2JA 4Z2NA 1UNRA 1KI1B 1ZSQA 2Z59A 5IRSA 1OQNA 1WI1A 2DHIA 3V5WA 1I2HA 1XODA 1P6SA 5LOPB 2I1KA 3UZTA 3KRXA 2N0YA 4P7IA 3VIAA 5EFXA 3ZDTA 1U29A 3GYOA 2YS5A 3SUZA 2LKOA 2Q13A 4GPTB 4QJ4B 1N3HA 2K00A 4HB2B 4HAXB 5D27A 3A58A 2V76A 2LULA 5M4YB 1ZVRA 1ZC3B 4WJ7A 3P6AA 3ULBA 1MK7B 4NSWA 2NBVA 3SO6A 5C5BA 3B77A 2PZ1A 1ISNA 3KSYA 2ELAA 2X18A 2W2XD 5L81A 1V88A 2J0KA 2E2XA 1M7EA 2AEHA 1WVHA 1V61A 3X23A 3PVLA 1GC6A 2QKLA 4GMVA 1Q67A 2LG1A 2Y8GA 3RCPA 4DIXA 2UZSA 3HIEA 1K5DB 5C5BB 2LYDA 3QWMA 3F5RA 4F7UP 3HK0A 3TFMA 1WGQA 1J0WA 4KVGB 1UPQA 4F7HA 1V5UA 3OHMB 1DDWA 3MPXA 1UPRA 5D3VA 1MK9B 2D10A 2RVBB 2J0JA 2GUMA 3U12A 4BBKA 4WSFA 2EJ8A 4HB3B 4GZUA 5J3YA 5DHAB 4HSIA 2DHJA 1EF1A 3HSAA 2DYNA 2YT2A 3LJUX 1DBHA 3PEGA 1XX0A 4MT7A 2EMSA 2ADZA 4F7GA 2KUQA 3A98B 1WJMA 2L2IA 3T06A 4GXBA 3F0WA 4A5KA 4MY6A 2COFA 2RSGA 1FOEA 2CY5A 2ZKMX 4YL8A 4GN1A 4HAZB 2JP2A 3DXDA 2ROVA 1LB1A 5D3YA 3DXEA 2IYBA 2DHKA 4GNKB 2D4QA 1X05A 1FHOA 5C6RA 5DIFB 1FAOA 1TJ6A 4K17A 2DA0A 3IVFA 1GG3A 2VRWB 4HAUB 1U5DA 2YS1A 3PVUA 4KHBA 3KZ1A 3SV1A 2N23A 2Z0PA 3CXBB 3ODOA 3D8FA 1MIXA 4PNKA 1FHWA 1KZ7A 3A8PA 5KQ4A 1J19A 5HE3A 2DFKA 4KHAA 1DDVA 1X11A 1ZYIA 2YSZA 1U5GA 1P5TA 1DDMA 4IAPA 5JHHA 1NTVA 2HE7A 4A6FA 2DN6A 2Z0OA 2D11A 3M1IB 1NTYA 4WVFB 2NMBA 1UNQA 2Z13A 5KCVA 2P8VA 2MDXA 2LOXA 2COCA 2Z14A 1X1FA 4YONA 2GJYA 2MFQA 2Z4DA 3SNHA 4DXAB 4L1RA 4A6FB 5C79A 3BJIA 4KAXB 4L6EA 2RNRB 4Z2MB 3BINA 2OTXA 2I5CA 2K2UA 3QIJA 3ML4A 1NI2A 1PFJA 1V5PA 1AQCA 4OSNA 1RJ2A 1SHCA 2Y8FA 3MDBC 2H7EA 2KIEA 4K81A 1E5WA 5J3QA 1U5FA 2D9ZA 1PLSA 3O96A 2RUKB 1OMWA 4D0NB 2FJLA 4A6KA 2EC1A 2KGXB 2P0DA 4CSQA 5LONB 1V5MA 2UZRA 2ELBA 3PSCA 2R09A 4H8SA 1BTNA 3DCXA 2BCJA 2D9XA 2DTCA 1V89A 3U8ZA 3A8QA 5D3XA 1B55A 5C16A 1OY2A 4EJNA 3ODWA 4EMOA 4EKUA 1Z87A 1ZM0A 4KHOA 2CODA 2LOZA 1U27A 2YVCA 2D2QA 4GOUA 2L1CA 1AWEA 2M38A 3FSSA 3WYFB 3KY9A 2RLOA 1Y19B 2EMTA 4DBBA 3NWAA 5D3WA 1XR0B 2K49A 2P0FA 4ZRJA 1H4RA 2YF0A 2QKMA 2D9VA 1MI1A 5HE2A 3VOQA 2R0DA 2GCJA 3FM8C 4ZRKA 2KCJA 5DI9B 4XWXA 1BAKA 2H7DA 1FHXA 3NW8A 3PP2A 3GYPA 4TYZA 1UEFA 4HAVB 1XKEA 2G35A 5CLLB 4A6HA 4KHBB 3WA0A 4Y94A 4DX8A 5FI0A 5HE1A 5I2SA 5FI1A 3N7CA 1MIZB 2MKRA 2FJUB 2J59M 1W1HA 1EGXA 4HB4B 3TVVA 4OT1A 5JLJB 3ODXA 1FGZA 4TKNA 1GC7A 1QQGA 1WJ1A 2ROZB 4GMXB 2KIGA 1I7AA 4D6WA 2OQBA 2YS3A 2W2WA 1T77A 3PZDA 4K2PA 1EVHA 2P0HA 3ZVRA 3AU5A 5LG4B 5HE0A 2DKPA 3HW2B 3G9WA 2DX1A 2YT0A 5GOWB 1ZC4B 2GS0A 3CIKA 2KR0A 4IOYX 1DROA 1PMSA 2KUPA 5CLQB 1X1GA 3TCAA 3AU4A 4QJ3B 4IFSA 2R2YA 5I2MA 2VSZA 3NWFA 5J3TA 1EAZA 1XD4A 2MWNB 5DH9B 4HDOA 3FEHA 5DHFB 3U7DA 5JHGA 1WG7A 2I5FA 4QXAB 3OANA 2XQNM 2IFSA 2YRYA 2Y7BA 3TO1A 2CAYA
chains in the Genus database with same CATH topology
2KR0A 4IOYX 2KUQA 4KHOA 2GCJA 3NWDA 2KIGA 4CSQA 4D6WA 5I2SA 2Z13A 2NBVA 4KHBA 3TW1A 2GCLA 4QJ3B 4GOUA 2R2YA 3OHMB 4IFSA 5I2MA 5IRSA 2Z14A 2K8EA 3NWFA 2FJUB 3NW8A 4OSNA 4PQ0A 3FVCA 3FSSA 2GUMA 3GYPA 2ZKMX 2Z4DA 3U12A 5LG4B 3GYOA 3TVVA 4HSIA 4L1RA 4OT1A 4QJ5B 2KIEA 4KHAA 3NWAA 4QJ4B 2K49A 4QXAB 4Z2NA 2YT2A 3TO1A 1ZYIA 4DIXA 2RRFA 3A58A 3HIEA 4GNKB 4KHBB 5M4YB 2Z59A 4Z2MB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K8E A;  2K49 A; 
#chains in the Genus database with same CATH topology
 2Z0Q A;  4HAW B;  1TQZ A;  4CHM A;  3P7Z A;  5JP4 A;  1BWN A;  5KQ1 A;  1U2B A;  2W2X C;  3NSU A;  2K8E A;  1XCG A;  4HB0 B;  3PVW A;  2D9W A;  2HTH B;  2ZPY A;  4PQ0 A;  4HHV A;  3ULC A;  1IRS A;  1K5G B;  4QJ5 B;  1FGY A;  2VKI A;  1MKE A;  1RRP B;  3D8E A;  3AJ4 A;  1FB8 A;  2DLW A;  4CHJ A;  1X86 A;  1MAI A;  1MPH A;  1BTK A;  2DYQ A;  1WGU A;  1M7R A;  4HAY B;  4DX9 0;  1NU2 A;  1TXD A;  1KZG A;  3PG7 A;  1QC6 A;  3SYX A;  2NZ8 B;  3FVC A;  4HAT B;  4HDQ A;  2UVM A;  1W1G A;  2RGN B;  4B6H A;  3HQC A;  2DX5 A;  2AL6 A;  1P3R A;  2RRF A;  4ZRI A;  3TW1 A;  1SGH A;  2DKQ A;  3NWD A;  4C0A A;  2GCL A;  1W1D A;  3DXC A;  2CY4 A;  3QBV B;  4K2O A;  4NY0 A;  3D8D A;  2D9Y A;  4MK0 A;  1U5E A;  2J0M A;  2YT1 A;  2COA A;  1LW3 A;  1DYN A;  2CRF A;  2M14 A;  1UNP A;  1Y5O A;  4CYE A;  1H10 A;  2I1J A;  3KRW A;  2K2J A;  4Z2N A;  1UNR A;  1KI1 B;  1ZSQ A;  2Z59 A;  5IRS A;  1OQN A;  1WI1 A;  2DHI A;  3V5W A;  1I2H A;  1XOD A;  1P6S A;  5LOP B;  2I1K A;  3UZT A;  3KRX A;  2N0Y A;  4P7I A;  3VIA A;  5EFX A;  3ZDT A;  1U29 A;  3GYO A;  2YS5 A;  3SUZ A;  2LKO A;  2Q13 A;  4GPT B;  4QJ4 B;  1N3H A;  2K00 A;  4HB2 B;  4HAX B;  5D27 A;  3A58 A;  2V76 A;  2LUL A;  5M4Y B;  1ZVR A;  1ZC3 B;  4WJ7 A;  3P6A A;  3ULB A;  1MK7 B;  4NSW A;  2NBV A;  3SO6 A;  5C5B A;  3B77 A;  2PZ1 A;  1ISN A;  3KSY A;  2ELA A;  2X18 A;  2W2X D;  5L81 A;  1V88 A;  2J0K A;  2E2X A;  1M7E A;  2AEH A;  1WVH A;  1V61 A;  3X23 A;  3PVL A;  1GC6 A;  2QKL A;  4GMV A;  1Q67 A;  2LG1 A;  2Y8G A;  3RCP A;  4DIX A;  2UZS A;  3HIE A;  1K5D B;  5C5B B;  2LYD A;  3QWM A;  3F5R A;  4F7U P;  3HK0 A;  3TFM A;  1WGQ A;  1J0W A;  4KVG B;  1UPQ A;  4F7H A;  1V5U A;  3OHM B;  1DDW A;  3MPX A;  1UPR A;  5D3V A;  1MK9 B;  2D10 A;  2RVB B;  2J0J A;  2GUM A;  3U12 A;  4BBK A;  4WSF A;  2EJ8 A;  4HB3 B;  4GZU A;  5J3Y A;  5DHA B;  4HSI A;  2DHJ A;  1EF1 A;  3HSA A;  2DYN A;  2YT2 A;  3LJU X;  1DBH A;  3PEG A;  1XX0 A;  4MT7 A;  2EMS A;  2ADZ A;  4F7G A;  2KUQ A;  3A98 B;  1WJM A;  2L2I A;  3T06 A;  4GXB A;  3F0W A;  4A5K A;  4MY6 A;  2COF A;  2RSG A;  1FOE A;  2CY5 A;  2ZKM X;  4YL8 A;  4GN1 A;  4HAZ B;  2JP2 A;  3DXD A;  2ROV A;  1LB1 A;  5D3Y A;  3DXE A;  2IYB A;  2DHK A;  4GNK B;  2D4Q A;  1X05 A;  1FHO A;  5C6R A;  5DIF B;  1FAO A;  1TJ6 A;  4K17 A;  2DA0 A;  3IVF A;  1GG3 A;  2VRW B;  4HAU B;  1U5D A;  2YS1 A;  3PVU A;  4KHB A;  3KZ1 A;  3SV1 A;  2N23 A;  2Z0P A;  3CXB B;  3ODO A;  3D8F A;  1MIX A;  4PNK A;  1FHW A;  1KZ7 A;  3A8P A;  5KQ4 A;  1J19 A;  5HE3 A;  2DFK A;  4KHA A;  1DDV A;  1X11 A;  1ZYI A;  2YSZ A;  1U5G A;  1P5T A;  1DDM A;  4IAP A;  5JHH A;  1NTV A;  2HE7 A;  4A6F A;  2DN6 A;  2Z0O A;  2D11 A;  3M1I B;  1NTY A;  4WVF B;  2NMB A;  1UNQ A;  2Z13 A;  5KCV A;  2P8V A;  2MDX A;  2LOX A;  2COC A;  2Z14 A;  1X1F A;  4YON A;  2GJY A;  2MFQ A;  2Z4D A;  3SNH A;  4DXA B;  4L1R A;  4A6F B;  5C79 A;  3BJI A;  4KAX B;  4L6E A;  2RNR B;  4Z2M B;  3BIN A;  2OTX A;  2I5C A;  2K2U A;  3QIJ A;  3ML4 A;  1NI2 A;  1PFJ A;  1V5P A;  1AQC A;  4OSN A;  1RJ2 A;  1SHC A;  2Y8F A;  3MDB C;  2H7E A;  2KIE A;  4K81 A;  1E5W A;  5J3Q A;  1U5F A;  2D9Z A;  1PLS A;  3O96 A;  2RUK B;  1OMW A;  4D0N B;  2FJL A;  4A6K A;  2EC1 A;  2KGX B;  2P0D A;  4CSQ A;  5LON B;  1V5M A;  2UZR A;  2ELB A;  3PSC A;  2R09 A;  4H8S A;  1BTN A;  3DCX A;  2BCJ A;  2D9X A;  2DTC A;  1V89 A;  3U8Z A;  3A8Q A;  5D3X A;  1B55 A;  5C16 A;  1OY2 A;  4EJN A;  3ODW A;  4EMO A;  4EKU A;  1Z87 A;  1ZM0 A;  4KHO A;  2COD A;  2LOZ A;  1U27 A;  2YVC A;  2D2Q A;  4GOU A;  2L1C A;  1AWE A;  2M38 A;  3FSS A;  3WYF B;  3KY9 A;  2RLO A;  1Y19 B;  2EMT A;  4DBB A;  3NWA A;  5D3W A;  1XR0 B;  2K49 A;  2P0F A;  4ZRJ A;  1H4R A;  2YF0 A;  2QKM A;  2D9V A;  1MI1 A;  5HE2 A;  3VOQ A;  2R0D A;  2GCJ A;  3FM8 C;  4ZRK A;  2KCJ A;  5DI9 B;  4XWX A;  1BAK A;  2H7D A;  1FHX A;  3NW8 A;  3PP2 A;  3GYP A;  4TYZ A;  1UEF A;  4HAV B;  1XKE A;  2G35 A;  5CLL B;  4A6H A;  4KHB B;  3WA0 A;  4Y94 A;  4DX8 A;  5FI0 A;  5HE1 A;  5I2S A;  5FI1 A;  3N7C A;  1MIZ B;  2MKR A;  2FJU B;  2J59 M;  1W1H A;  1EGX A;  4HB4 B;  3TVV A;  4OT1 A;  5JLJ B;  3ODX A;  1FGZ A;  4TKN A;  1GC7 A;  1QQG A;  1WJ1 A;  2ROZ B;  4GMX B;  2KIG A;  1I7A A;  4D6W A;  2OQB A;  2YS3 A;  2W2W A;  1T77 A;  3PZD A;  4K2P A;  1EVH A;  2P0H A;  3ZVR A;  3AU5 A;  5LG4 B;  5HE0 A;  2DKP A;  3HW2 B;  3G9W A;  2DX1 A;  2YT0 A;  5GOW B;  1ZC4 B;  2GS0 A;  3CIK A;  2KR0 A;  4IOY X;  1DRO A;  1PMS A;  2KUP A;  5CLQ B;  1X1G A;  3TCA A;  3AU4 A;  4QJ3 B;  4IFS A;  2R2Y A;  5I2M A;  2VSZ A;  3NWF A;  5J3T A;  1EAZ A;  1XD4 A;  2MWN B;  5DH9 B;  4HDO A;  3FEH A;  5DHF B;  3U7D A;  5JHG A;  1WG7 A;  2I5F A;  4QXA B;  3OAN A;  2XQN M;  2IFS A;  2YRY A;  2Y7B A;  3TO1 A;  2CAY A; 
#chains in the Genus database with same CATH homology
 2KR0 A;  4IOY X;  2KUQ A;  4KHO A;  2GCJ A;  3NWD A;  2KIG A;  4CSQ A;  4D6W A;  5I2S A;  2Z13 A;  2NBV A;  4KHB A;  3TW1 A;  2GCL A;  4QJ3 B;  4GOU A;  2R2Y A;  3OHM B;  4IFS A;  5I2M A;  5IRS A;  2Z14 A;  2K8E A;  3NWF A;  2FJU B;  3NW8 A;  4OSN A;  4PQ0 A;  3FVC A;  3FSS A;  2GUM A;  3GYP A;  2ZKM X;  2Z4D A;  3U12 A;  5LG4 B;  3GYO A;  3TVV A;  4HSI A;  4L1R A;  4OT1 A;  4QJ5 B;  2KIE A;  4KHA A;  3NWA A;  4QJ4 B;  2K49 A;  4QXA B;  4Z2N A;  2YT2 A;  3TO1 A;  1ZYI A;  4DIX A;  2RRF A;  3A58 A;  3HIE A;  4GNK B;  4KHB B;  5M4Y B;  2Z59 A;  4Z2M B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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