2K8EA

Solution nmr structure of protein of unknown function yegp from e. coli. ontario center for structural proteomics target ec0640_1_123 northeast structural genomics consortium target et102.
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
116
structure length
116
Chain Sequence
GVIMAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNTGSN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
source organism Escherichia coli
publication title Solution structure of protein yegP from Escherichia Coli.
rcsb
molecule keywords UPF0339 protein yegP
total genus 31
structure length 116
sequence length 116
ec nomenclature
pdb deposition date 2008-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07411 DUF1508 Domain of unknown function (DUF1508)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.29.80 Mainly Beta Roll PH-domain like PH-domain like 2k8eA00
2K49A 2K8EA
chains in the Genus database with same CATH superfamily
2LOXA 3RCPA 1P5TA 2Q13A 1NI2A 1NU2A 3A8PA 1Q67A 3M1IB 2GJYA 3QBVB 2M14A 3A8QA 4CYEA 2VSZA 2UZSA 3GYPA 2D11A 1AWEA 3FSSA 2COCA 4GN1A 4A6KA 2COAA 4EKUA 3B77A 4ZRKA 2DX5A 3HSAA 2NBVA 5DI9B 2UVMA 2IYBA 4QJ3B 4YL8A 2D9VA 1BTNA 3D8EA 3O96A 4KHBA 3ODWA 2DKQA 3P6AA 1I7AA 4KAXB 1KI1B 1X1FA 4PQ0A 1ZYIA 3P7ZA 2DA0A 3A58A 1U5FA 5GOWB 4MY6A 5J3QA 1V88A 1W1GA 3TFMA 4KHBB 3ULCA 4C0AA 2GCJA 4DX90 4GPTB 4F7HA 5KCVA 2YF0A 4L6EA 2ROZB 1U29A 1Y19B 2DHIA 3NSUA 4OSNA 3N7CA 1WI1A 1QQGA 5HE0A 1X11A 1U27A 4Z2MB 2Z59A 1DDVA 4YONA 4GZUA 3ULBA 1OQNA 1ISNA 4B6HA 3ODXA 4DX8A 3CIKA 3V5WA 1Z87A 5LG4B 4HDOA 5DHFB 2KIEA 1P3RA 2I5CA 5J3YA 4PNKA 2ELAA 3MDBC 1UNRA 2J0MA 3AU5A 1M7EA 1UPQA 3PZDA 4HSIA 2X18A 1U5EA 1FGYA 2DX1A 4DIXA 2RLOA 4QJ5B 1XKEA 4F7GA 1MI1A 1WVHA 4D6WA 4ZRJA 1NTVA 3G9WA 1PFJA 2K00A 5C6RA 1BWNA 3PVLA 3BJIA 5CLQB 4CHJA 3VIAA 2D9WA 3SYXA 1V89A 1H10A 4L1RA 1M7RA 2YT1A 4HAYB 2Y8FA 5D3VA 2AL6A 2KR0A 3T06A 4WSFA 3X23A 1J19A 2DTCA 1MAIA 1K5GB 1FHOA 2EC1A 3TCAA 1SGHA 3DXEA 3DXCA 5JHHA 3LJUX 2N23A 4GNKB 1W1HA 4KHOA 4A6FA 1KZ7A 3D8DA 2L1CA 1FGZA 2DN6A 5C5BA 1EAZA 4EJNA 1V5PA 1H4RA 1WG7A 5DHAB 5J3TA 1ZM0A 2ZKMX 1LB1A 3FVCA 1MK7B 4GMVA 2MDXA 1U5DA 5LONB 2RRFA 1U2BA 3MPXA 1PMSA 3SUZA 2RSGA 5D27A 4HAWB 2W2WA 1J0WA 2CODA 4Z2NA 3NWFA 4Y94A 2P8VA 4NSWA 5JHGA 3UZTA 3FM8C 3NWAA 2K8EA 2MWNB 2ROVA 3U7DA 2YT0A 5DH9B 3SV1A 5IRSA 2YT2A 1EVHA 1MPHA 4GXBA 4OT1A 3QIJA 2D9YA 4K2PA 2YS1A 1RRPB 1OY2A 2KCJA 4NY0A 1RJ2A 1AQCA 1GC7A 1ZC3B 2FJUB 1TXDA 2Y7BA 2D2QA 2VRWB 1MK9B 1DBHA 1N3HA 1K5DB 2RUKB 5HE3A 5C16A 2J0KA 2DHJA 3U12A 3HQCA 2CRFA 1ZVRA 1WGUA 1WJMA 2M38A 2EMTA 3VOQA 1EGXA 4MK0A 2CY5A 1W1DA 5DIFB 2KIGA 1QC6A 2DHKA 5KQ1A 3ZDTA 3IVFA 3BINA 3OANA 4HDQA 3HW2B 1DYNA 2OTXA 4WJ7A 4DXAB 1WJ1A 4HB2B 1X1GA 2QKMA 2K49A 2ELBA 1P6SA 2DKPA 4P7IA 3F0WA 2LULA 3ML4A 2ZPYA 5I2SA 5JP4A 4WVFB 3QWMA 2Z0QA 1U5GA 3PSCA 1XODA 4QJ4B 5C79A 2P0HA 3SNHA 3OHMB 4DBBA 5LOPB 2NMBA 1DDMA 1FHXA 3TW1A 1IRSA 5D3YA 2LG1A 2OQBA 2HE7A 2RVBB 4HB0B 1ZC4B 1DROA 3F5RA 4QXAB 3ODOA 2YS3A 1UNQA 3NW8A 2EMSA 1E5WA 1KZGA 4IAPA 2I1KA 2YRYA 2DFKA 4GOUA 1SHCA 1XD4A 3FEHA 5M4YB 2L2IA 2D9ZA 3DCXA 2W2XD 2GS0A 2YS5A 4KHAA 4KVGB 5EFXA 2E2XA 2Z13A 4TYZA 4GMXB 3DXDA 5FI1A 2FJLA 2GUMA 1FAOA 2V76A 4HB3B 1XX0A 3WYFB 4HB4B 3A98B 2IFSA 5D3WA 1I2HA 2H7EA 2KUPA 2XQNM 4K17A 1OMWA 4A6FB 2DLWA 5HE2A 4HHVA 1LW3A 2KGXB 3HIEA 1V5MA 2MFQA 1V5UA 1UPRA 2AEHA 5C5BB 3ZVRA 2Z0PA 4HAZB 1BAKA 2G35A 3U8ZA 1TQZA 2COFA 1GC6A 1NTYA 4HAVB 1GG3A 3TVVA 2RNRB 2Z4DA 3KSYA 2VKIA 5D3XA 3PVUA 4A5KA 5CLLB 2K2JA 2LOZA 2D4QA 1X86A 1FOEA 2BCJA 5HE1A 4IFSA 1Y5OA 4F7UP 1T77A 1BTKA 4HAUB 1PLSA 2DYNA 3PP2A 3NWDA 2LKOA 1FB8A 3TO1A 3HK0A 3KY9A 5JLJB 3AJ4A 2JP2A 2P0DA 2YSZA 1DDWA 3PVWA 3KRWA 1WGQA 4ZRIA 4HATB 3KRXA 4MT7A 2D10A 2LYDA 2K2UA 3KZ1A 3AU4A 1MKEA 4K81A 2N0YA 2Z0OA 2QKLA 4H8SA 2YVCA 2Y8GA 2D9XA 2HTHB 2J59M 1X05A 2R2YA 1UEFA 2J0JA 3PG7A 2W2XC 3CXBB 4CSQA 4HAXB 5L81A 2CY4A 2GCLA 1B55A 2I1JA 5KQ4A 2H7DA 2R0DA 4EMOA 4TKNA 1ZSQA 4A6HA 4K2OA 4CHMA 3WA0A 1MIZB 1UNPA 1XR0B 1TJ6A 4BBKA 4XWXA 3PEGA 2NZ8B 2R09A 2KUQA 2RGNB 3SO6A 2CAYA 1FHWA 1MIXA 1XCGA 2I5FA 2Z14A 3D8FA 5FI0A 2P0FA 2MKRA 4D0NB 2ADZA 2PZ1A 2EJ8A 3GYOA 2DYQA 5I2MA 1V61A 4IOYX 2UZRA 1EF1A
chains in the Genus database with same CATH topology
2GCLA 3GYPA 4KHOA 3FSSA 3U12A 4Z2NA 2K49A 3NWFA 4L1RA 1ZYIA 4PQ0A 4HSIA 2GUMA 3A58A 4IFSA 3NWAA 4QXAB 2KIGA 2Z59A 4Z2MB 2K8EA 4DIXA 4QJ5B 3TVVA 4KHBB 2Z4DA 2KR0A 2NBVA 3NW8A 4D6WA 2YT2A 5I2SA 5IRSA 2KUQA 2GCJA 4OT1A 4GOUA 2Z14A 4QJ4B 2ZKMX 3FVCA 4KHBA 5M4YB 5LG4B 3NWDA 2R2YA 4QJ3B 3GYOA 3HIEA 3OHMB 2KIEA 5I2MA 4KHAA 3TO1A 2RRFA 4CSQA 2FJUB 4OSNA 4IOYX 3TW1A 2Z13A 4GNKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K49 A;  2K8E A; 
#chains in the Genus database with same CATH topology
 2LOX A;  3RCP A;  1P5T A;  2Q13 A;  1NI2 A;  1NU2 A;  3A8P A;  1Q67 A;  3M1I B;  2GJY A;  3QBV B;  2M14 A;  3A8Q A;  4CYE A;  2VSZ A;  2UZS A;  3GYP A;  2D11 A;  1AWE A;  3FSS A;  2COC A;  4GN1 A;  4A6K A;  2COA A;  4EKU A;  3B77 A;  4ZRK A;  2DX5 A;  3HSA A;  2NBV A;  5DI9 B;  2UVM A;  2IYB A;  4QJ3 B;  4YL8 A;  2D9V A;  1BTN A;  3D8E A;  3O96 A;  4KHB A;  3ODW A;  2DKQ A;  3P6A A;  1I7A A;  4KAX B;  1KI1 B;  1X1F A;  4PQ0 A;  1ZYI A;  3P7Z A;  2DA0 A;  3A58 A;  1U5F A;  5GOW B;  4MY6 A;  5J3Q A;  1V88 A;  1W1G A;  3TFM A;  4KHB B;  3ULC A;  4C0A A;  2GCJ A;  4DX9 0;  4GPT B;  4F7H A;  5KCV A;  2YF0 A;  4L6E A;  2ROZ B;  1U29 A;  1Y19 B;  2DHI A;  3NSU A;  4OSN A;  3N7C A;  1WI1 A;  1QQG A;  5HE0 A;  1X11 A;  1U27 A;  4Z2M B;  2Z59 A;  1DDV A;  4YON A;  4GZU A;  3ULB A;  1OQN A;  1ISN A;  4B6H A;  3ODX A;  4DX8 A;  3CIK A;  3V5W A;  1Z87 A;  5LG4 B;  4HDO A;  5DHF B;  2KIE A;  1P3R A;  2I5C A;  5J3Y A;  4PNK A;  2ELA A;  3MDB C;  1UNR A;  2J0M A;  3AU5 A;  1M7E A;  1UPQ A;  3PZD A;  4HSI A;  2X18 A;  1U5E A;  1FGY A;  2DX1 A;  4DIX A;  2RLO A;  4QJ5 B;  1XKE A;  4F7G A;  1MI1 A;  1WVH A;  4D6W A;  4ZRJ A;  1NTV A;  3G9W A;  1PFJ A;  2K00 A;  5C6R A;  1BWN A;  3PVL A;  3BJI A;  5CLQ B;  4CHJ A;  3VIA A;  2D9W A;  3SYX A;  1V89 A;  1H10 A;  4L1R A;  1M7R A;  2YT1 A;  4HAY B;  2Y8F A;  5D3V A;  2AL6 A;  2KR0 A;  3T06 A;  4WSF A;  3X23 A;  1J19 A;  2DTC A;  1MAI A;  1K5G B;  1FHO A;  2EC1 A;  3TCA A;  1SGH A;  3DXE A;  3DXC A;  5JHH A;  3LJU X;  2N23 A;  4GNK B;  1W1H A;  4KHO A;  4A6F A;  1KZ7 A;  3D8D A;  2L1C A;  1FGZ A;  2DN6 A;  5C5B A;  1EAZ A;  4EJN A;  1V5P A;  1H4R A;  1WG7 A;  5DHA B;  5J3T A;  1ZM0 A;  2ZKM X;  1LB1 A;  3FVC A;  1MK7 B;  4GMV A;  2MDX A;  1U5D A;  5LON B;  2RRF A;  1U2B A;  3MPX A;  1PMS A;  3SUZ A;  2RSG A;  5D27 A;  4HAW B;  2W2W A;  1J0W A;  2COD A;  4Z2N A;  3NWF A;  4Y94 A;  2P8V A;  4NSW A;  5JHG A;  3UZT A;  3FM8 C;  3NWA A;  2K8E A;  2MWN B;  2ROV A;  3U7D A;  2YT0 A;  5DH9 B;  3SV1 A;  5IRS A;  2YT2 A;  1EVH A;  1MPH A;  4GXB A;  4OT1 A;  3QIJ A;  2D9Y A;  4K2P A;  2YS1 A;  1RRP B;  1OY2 A;  2KCJ A;  4NY0 A;  1RJ2 A;  1AQC A;  1GC7 A;  1ZC3 B;  2FJU B;  1TXD A;  2Y7B A;  2D2Q A;  2VRW B;  1MK9 B;  1DBH A;  1N3H A;  1K5D B;  2RUK B;  5HE3 A;  5C16 A;  2J0K A;  2DHJ A;  3U12 A;  3HQC A;  2CRF A;  1ZVR A;  1WGU A;  1WJM A;  2M38 A;  2EMT A;  3VOQ A;  1EGX A;  4MK0 A;  2CY5 A;  1W1D A;  5DIF B;  2KIG A;  1QC6 A;  2DHK A;  5KQ1 A;  3ZDT A;  3IVF A;  3BIN A;  3OAN A;  4HDQ A;  3HW2 B;  1DYN A;  2OTX A;  4WJ7 A;  4DXA B;  1WJ1 A;  4HB2 B;  1X1G A;  2QKM A;  2K49 A;  2ELB A;  1P6S A;  2DKP A;  4P7I A;  3F0W A;  2LUL A;  3ML4 A;  2ZPY A;  5I2S A;  5JP4 A;  4WVF B;  3QWM A;  2Z0Q A;  1U5G A;  3PSC A;  1XOD A;  4QJ4 B;  5C79 A;  2P0H A;  3SNH A;  3OHM B;  4DBB A;  5LOP B;  2NMB A;  1DDM A;  1FHX A;  3TW1 A;  1IRS A;  5D3Y A;  2LG1 A;  2OQB A;  2HE7 A;  2RVB B;  4HB0 B;  1ZC4 B;  1DRO A;  3F5R A;  4QXA B;  3ODO A;  2YS3 A;  1UNQ A;  3NW8 A;  2EMS A;  1E5W A;  1KZG A;  4IAP A;  2I1K A;  2YRY A;  2DFK A;  4GOU A;  1SHC A;  1XD4 A;  3FEH A;  5M4Y B;  2L2I A;  2D9Z A;  3DCX A;  2W2X D;  2GS0 A;  2YS5 A;  4KHA A;  4KVG B;  5EFX A;  2E2X A;  2Z13 A;  4TYZ A;  4GMX B;  3DXD A;  5FI1 A;  2FJL A;  2GUM A;  1FAO A;  2V76 A;  4HB3 B;  1XX0 A;  3WYF B;  4HB4 B;  3A98 B;  2IFS A;  5D3W A;  1I2H A;  2H7E A;  2KUP A;  2XQN M;  4K17 A;  1OMW A;  4A6F B;  2DLW A;  5HE2 A;  4HHV A;  1LW3 A;  2KGX B;  3HIE A;  1V5M A;  2MFQ A;  1V5U A;  1UPR A;  2AEH A;  5C5B B;  3ZVR A;  2Z0P A;  4HAZ B;  1BAK A;  2G35 A;  3U8Z A;  1TQZ A;  2COF A;  1GC6 A;  1NTY A;  4HAV B;  1GG3 A;  3TVV A;  2RNR B;  2Z4D A;  3KSY A;  2VKI A;  5D3X A;  3PVU A;  4A5K A;  5CLL B;  2K2J A;  2LOZ A;  2D4Q A;  1X86 A;  1FOE A;  2BCJ A;  5HE1 A;  4IFS A;  1Y5O A;  4F7U P;  1T77 A;  1BTK A;  4HAU B;  1PLS A;  2DYN A;  3PP2 A;  3NWD A;  2LKO A;  1FB8 A;  3TO1 A;  3HK0 A;  3KY9 A;  5JLJ B;  3AJ4 A;  2JP2 A;  2P0D A;  2YSZ A;  1DDW A;  3PVW A;  3KRW A;  1WGQ A;  4ZRI A;  4HAT B;  3KRX A;  4MT7 A;  2D10 A;  2LYD A;  2K2U A;  3KZ1 A;  3AU4 A;  1MKE A;  4K81 A;  2N0Y A;  2Z0O A;  2QKL A;  4H8S A;  2YVC A;  2Y8G A;  2D9X A;  2HTH B;  2J59 M;  1X05 A;  2R2Y A;  1UEF A;  2J0J A;  3PG7 A;  2W2X C;  3CXB B;  4CSQ A;  4HAX B;  5L81 A;  2CY4 A;  2GCL A;  1B55 A;  2I1J A;  5KQ4 A;  2H7D A;  2R0D A;  4EMO A;  4TKN A;  1ZSQ A;  4A6H A;  4K2O A;  4CHM A;  3WA0 A;  1MIZ B;  1UNP A;  1XR0 B;  1TJ6 A;  4BBK A;  4XWX A;  3PEG A;  2NZ8 B;  2R09 A;  2KUQ A;  2RGN B;  3SO6 A;  2CAY A;  1FHW A;  1MIX A;  1XCG A;  2I5F A;  2Z14 A;  3D8F A;  5FI0 A;  2P0F A;  2MKR A;  4D0N B;  2ADZ A;  2PZ1 A;  2EJ8 A;  3GYO A;  2DYQ A;  5I2M A;  1V61 A;  4IOY X;  2UZR A;  1EF1 A; 
#chains in the Genus database with same CATH homology
 2GCL A;  3GYP A;  4KHO A;  3FSS A;  3U12 A;  4Z2N A;  2K49 A;  3NWF A;  4L1R A;  1ZYI A;  4PQ0 A;  4HSI A;  2GUM A;  3A58 A;  4IFS A;  3NWA A;  4QXA B;  2KIG A;  2Z59 A;  4Z2M B;  2K8E A;  4DIX A;  4QJ5 B;  3TVV A;  4KHB B;  2Z4D A;  2KR0 A;  2NBV A;  3NW8 A;  4D6W A;  2YT2 A;  5I2S A;  5IRS A;  2KUQ A;  2GCJ A;  4OT1 A;  4GOU A;  2Z14 A;  4QJ4 B;  2ZKM X;  3FVC A;  4KHB A;  5M4Y B;  5LG4 B;  3NWD A;  2R2Y A;  4QJ3 B;  3GYO A;  3HIE A;  3OHM B;  2KIE A;  5I2M A;  4KHA A;  3TO1 A;  2RRF A;  4CSQ A;  2FJU B;  4OSN A;  4IOY X;  3TW1 A;  2Z13 A;  4GNK B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...