2KA5A

Nmr structure of the protein tm1081
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
125
structure length
125
Chain Sequence
MGSDKIHHHHHHMFPYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVERVLSLTNLDRIVKIYDTISEAMEEVRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative anti-sigma factor antagonist TM_1081
publication title Comparison of NMR and crystal structures highlights conformational isomerism in protein active sites.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 26
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2008-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 2ka5A01
3LKLA 1TIDB 3MGLA 1H4ZA 1TH8B 1THNB 3T6OA 3AGEA 3F43A 2VY9A 1H4XA 2KLNA 5EUZA 3IH9A 3OIZA 1VC1A 4QTPA 1TILB 5EZBA 3NY7A 3LLOA 1AUZA 3IF5A 4DGHA 3OIRA 3ZTBA 4HYLA 3IHBA 3ZXNA 3IH8A 5EUWA 3IHAA 1BUZA 5EUUA 1SBOA 3AGDA 4XS5A 4DGFA 1H4YA 5EUXA 2KA5A 5EUSA 1T6RA
chains in the Genus database with same CATH superfamily
2DXLA 1N6FA 1TH8B 2B78A 3T6OA 2OASA 1N6DA 3OIZA 3EH7A 4HIZA 1J7XA 3LLOA 4GHNA 3GVLA 4AEJA 2DXNA 1AUZA 3IF5A 1HF2A 3ZXNA 4L1CA 3AGDA 4XS5A 3GMFA 3C0KA 5EUSA 3DUPA 1TIDB 3DJAA 1BPLA 1V0EA 2VY9A 1H4XA 1FC9A 3GVJA 4DMGA 5EZBA 2CWWA 3NY7A 4JC0A 3D03A 1FC7A 3OIRA 3IH8A 3QDQA 3IHAA 5EUWA 1FCFA 5EUUA 1SBOA 5EUXA 2KA5A 2AS0A 3K50A 1T6RA 3GK7A 3MGLA 1THNB 3F43A 2KLNA 2ZO9B 1K32A 3MOGA 3JU4A 3IH9A 1VC1A 4QTPA 4DGHA 3ZTBA 3IHBA 1V0FA 4DGFA 3VSEA 3LKLA 1H4ZA 1WXXA 3AGEA 1WXWA 3LDFA 4AE2A 5EUZA 1TILB 3GVKA 4HYLA 3DORA 1BUZA 1FC6A 3GHFA 3V97A 3D3UA 1H4YA 1N6EA 2RRLA 2ZOAA 3V8VA 4L8KA
chains in the Genus database with same CATH topology
3LKLA 1TIDB 3MGLA 1H4ZA 1TH8B 1THNB 3T6OA 3AGEA 3F43A 2VY9A 1H4XA 2KLNA 5EUZA 3IH9A 3OIZA 1VC1A 4QTPA 1TILB 5EZBA 3NY7A 3LLOA 1AUZA 3IF5A 4DGHA 3OIRA 3ZTBA 4HYLA 3IHBA 3ZXNA 3IH8A 5EUWA 3IHAA 1BUZA 5EUUA 1SBOA 3AGDA 4XS5A 4DGFA 1H4YA 5EUXA 2KA5A 5EUSA 1T6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LKL A;  1TID B;  3MGL A;  1H4Z A;  1TH8 B;  1THN B;  3T6O A;  3AGE A;  3F43 A;  2VY9 A;  1H4X A;  2KLN A;  5EUZ A;  3IH9 A;  3OIZ A;  1VC1 A;  4QTP A;  1TIL B;  5EZB A;  3NY7 A;  3LLO A;  1AUZ A;  3IF5 A;  4DGH A;  3OIR A;  3ZTB A;  4HYL A;  3IHB A;  3ZXN A;  3IH8 A;  5EUW A;  3IHA A;  1BUZ A;  5EUU A;  1SBO A;  3AGD A;  4XS5 A;  4DGF A;  1H4Y A;  5EUX A;  2KA5 A;  5EUS A;  1T6R A; 
#chains in the Genus database with same CATH topology
 2DXL A;  1N6F A;  1TH8 B;  2B78 A;  3T6O A;  2OAS A;  1N6D A;  3OIZ A;  3EH7 A;  4HIZ A;  1J7X A;  3LLO A;  4GHN A;  3GVL A;  4AEJ A;  2DXN A;  1AUZ A;  3IF5 A;  1HF2 A;  3ZXN A;  4L1C A;  3AGD A;  4XS5 A;  3GMF A;  3C0K A;  5EUS A;  3DUP A;  1TID B;  3DJA A;  1BPL A;  1V0E A;  2VY9 A;  1H4X A;  1FC9 A;  3GVJ A;  4DMG A;  5EZB A;  2CWW A;  3NY7 A;  4JC0 A;  3D03 A;  1FC7 A;  3OIR A;  3IH8 A;  3QDQ A;  3IHA A;  5EUW A;  1FCF A;  5EUU A;  1SBO A;  5EUX A;  2KA5 A;  2AS0 A;  3K50 A;  1T6R A;  3GK7 A;  3MGL A;  1THN B;  3F43 A;  2KLN A;  2ZO9 B;  1K32 A;  3MOG A;  3JU4 A;  3IH9 A;  1VC1 A;  4QTP A;  4DGH A;  3ZTB A;  3IHB A;  1V0F A;  4DGF A;  3VSE A;  3LKL A;  1H4Z A;  1WXX A;  3AGE A;  1WXW A;  3LDF A;  4AE2 A;  5EUZ A;  1TIL B;  3GVK A;  4HYL A;  3DOR A;  1BUZ A;  1FC6 A;  3GHF A;  3V97 A;  3D3U A;  1H4Y A;  1N6E A;  2RRL A;  2ZOA A;  3V8V A;  4L8K A; 
#chains in the Genus database with same CATH homology
 3LKL A;  1TID B;  3MGL A;  1H4Z A;  1TH8 B;  1THN B;  3T6O A;  3AGE A;  3F43 A;  2VY9 A;  1H4X A;  2KLN A;  5EUZ A;  3IH9 A;  3OIZ A;  1VC1 A;  4QTP A;  1TIL B;  5EZB A;  3NY7 A;  3LLO A;  1AUZ A;  3IF5 A;  4DGH A;  3OIR A;  3ZTB A;  4HYL A;  3IHB A;  3ZXN A;  3IH8 A;  5EUW A;  3IHA A;  1BUZ A;  5EUU A;  1SBO A;  3AGD A;  4XS5 A;  4DGF A;  1H4Y A;  5EUX A;  2KA5 A;  5EUS A;  1T6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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