2KC6A

Nmr solution structure of the pheromone en-1 of euplotes nobilii at -1.5 c
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
52
structure length
52
Chain Sequence
NPEDWFTPDTCAYGDSNTAWTTCTTPGQTCYTCCSSCFDVVGEQACQMSAQC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Mating pheromone En-1
publication title Molecular cold-adaptation: Comparative analysis of two homologous families of psychrophilic and mesophilic signal proteins of the protozoan ciliate, Euplotes.
pubmed doi rcsb
total genus 15
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2008-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.50.40 Mainly Alpha Up-down Bundle Pheromone ER-1 Pheromone ER-1 2kc6A01
2NSWA 2KK2A 2NSVA 2KC6A 2JMSA
chains in the Genus database with same CATH superfamily
4EDVA 4EE1A 4EDRA 2JMSA 1DDEA 1ERCA 2KK2A 2LMKA 2NSVA 3CU7A 3KXRA 1EQNA 4E2KA 3KLSA 1DD9A 2AU3A 2NSWA 4EDGA 3B39A 2KC6A 4EDKA 2B39A 4EDTA 2ERLA
chains in the Genus database with same CATH topology
4EDVA 4EE1A 4EDRA 2JMSA 1DDEA 1ERCA 2KK2A 2LMKA 2NSVA 3CU7A 3KXRA 1EQNA 4E2KA 3KLSA 1DD9A 2AU3A 2NSWA 4EDGA 3B39A 2KC6A 4EDKA 2B39A 4EDTA 2ERLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NSW A;  2KK2 A;  2NSV A;  2KC6 A;  2JMS A; 
#chains in the Genus database with same CATH topology
 4EDV A;  4EE1 A;  4EDR A;  2JMS A;  1DDE A;  1ERC A;  2KK2 A;  2LMK A;  2NSV A;  3CU7 A;  3KXR A;  1EQN A;  4E2K A;  3KLS A;  1DD9 A;  2AU3 A;  2NSW A;  4EDG A;  3B39 A;  2KC6 A;  4EDK A;  2B39 A;  4EDT A;  2ERL A; 
#chains in the Genus database with same CATH homology
 4EDV A;  4EE1 A;  4EDR A;  2JMS A;  1DDE A;  1ERC A;  2KK2 A;  2LMK A;  2NSV A;  3CU7 A;  3KXR A;  1EQN A;  4E2K A;  3KLS A;  1DD9 A;  2AU3 A;  2NSW A;  4EDG A;  3B39 A;  2KC6 A;  4EDK A;  2B39 A;  4EDT A;  2ERL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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