2KC9A

Structure of e. coli toxin rele (r81a/r83a) mutant in the free state
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
95
structure length
95
Chain Sequence
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAEASEVYSEAVKRIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Toxin relE
publication title Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site.
pubmed doi rcsb
source organism Escherichia coli
total genus 29
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2008-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 2kc9A00
4YY3Y 4LS4A 4NRNA 2A6QE 3KXEA 4ML0B 4PX8A 5CZEB 4FXED 4LSYA 4FXHA 4LTTA 3BPQB 5CZFC 4ML2A 2KHEA 5CEGB 2KC8A 3OEIC 3G5OB 2A6SA 4MCXB 2OTRA 4Q2UB 4MCTB 4FXIA 5IWHA 5CW7B 5IXLA 1Z8MA 1WMIA 4MMGA 4MMJA 2A6RA 2KC9A
chains in the Genus database with same CATH superfamily
2DJHA 4YY3Y 4LS4A 4NRNA 4FBDA 2A6QE 3KXEA 4ML0B 4PX8A 2DFXE 5CZEB 4FXED 4LSYA 4FXHA 4LTTA 3BPQB 5CZFC 4ML2A 2KHEA 5CEGB 3AO9A 3HI2B 2A8KA 2KC8A 3OEIC 3G5OB 2A6SA 4MCXB 2OTRA 2PD0A 4Q2UB 4MCTB 4FXIA 1XQBA 5IWHA 3VJ7A 5CW7B 5IXLA 1Z8MA 1WMIA 4MMGA 4MMJA 2A6RA 2FHZB 2KC9A
chains in the Genus database with same CATH topology
4YY3Y 4LS4A 4NRNA 2A6QE 3KXEA 4ML0B 4PX8A 5CZEB 4FXED 4LSYA 4FXHA 4LTTA 3BPQB 5CZFC 4ML2A 2KHEA 5CEGB 2KC8A 3OEIC 3G5OB 2A6SA 4MCXB 2OTRA 4Q2UB 4MCTB 4FXIA 5IWHA 5CW7B 5IXLA 1Z8MA 1WMIA 4MMGA 4MMJA 2A6RA 2KC9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YY3 Y;  4LS4 A;  4NRN A;  2A6Q E;  3KXE A;  4ML0 B;  4PX8 A;  5CZE B;  4FXE D;  4LSY A;  4FXH A;  4LTT A;  3BPQ B;  5CZF C;  4ML2 A;  2KHE A;  5CEG B;  2KC8 A;  3OEI C;  3G5O B;  2A6S A;  4MCX B;  2OTR A;  4Q2U B;  4MCT B;  4FXI A;  5IWH A;  5CW7 B;  5IXL A;  1Z8M A;  1WMI A;  4MMG A;  4MMJ A;  2A6R A;  2KC9 A; 
#chains in the Genus database with same CATH topology
 2DJH A;  4YY3 Y;  4LS4 A;  4NRN A;  4FBD A;  2A6Q E;  3KXE A;  4ML0 B;  4PX8 A;  2DFX E;  5CZE B;  4FXE D;  4LSY A;  4FXH A;  4LTT A;  3BPQ B;  5CZF C;  4ML2 A;  2KHE A;  5CEG B;  3AO9 A;  3HI2 B;  2A8K A;  2KC8 A;  3OEI C;  3G5O B;  2A6S A;  4MCX B;  2OTR A;  2PD0 A;  4Q2U B;  4MCT B;  4FXI A;  1XQB A;  5IWH A;  3VJ7 A;  5CW7 B;  5IXL A;  1Z8M A;  1WMI A;  4MMG A;  4MMJ A;  2A6R A;  2FHZ B;  2KC9 A; 
#chains in the Genus database with same CATH homology
 4YY3 Y;  4LS4 A;  4NRN A;  2A6Q E;  3KXE A;  4ML0 B;  4PX8 A;  5CZE B;  4FXE D;  4LSY A;  4FXH A;  4LTT A;  3BPQ B;  5CZF C;  4ML2 A;  2KHE A;  5CEG B;  2KC8 A;  3OEI C;  3G5O B;  2A6S A;  4MCX B;  2OTR A;  4Q2U B;  4MCT B;  4FXI A;  5IWH A;  5CW7 B;  5IXL A;  1Z8M A;  1WMI A;  4MMG A;  4MMJ A;  2A6R A;  2KC9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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