2KD3A

Nmr structure of the wnt modulator protein sclerostin
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
97
structure length
97
Chain Sequence
KDVSEYSCRELHYTRFLTDGPCRSAKPVTELVCSGQCGPARLLPNAIGRVKWWRPNGPDFRCIPDRYRAQRVQLLCPGGAAPRSRKVRLVASCKCKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Sclerostin
publication title NMR structure of the Wnt modulator protein Sclerostin
pubmed doi rcsb
source organism Mus musculus
total genus 4
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2009-01-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 2kd3A00
3S1BV 2KD3A 1JPYA 1MKKA 3FUBB 4UHYA 1HRPB 1WQ9B 4X1JA 1TGKA 1LXIA 1RV6V 1AGQA 2GOOA 3MJGA 1TFGA 1WAQA 4GLSE 1B8MA 1ZKZA 5HHDA 2GH0C 4QCIC 5E4GA 5BQEB 4GLNE 1TZIV 3BDYV 4EDWV 1KTZA 5BQ8B 3SEKB 1M4UA 1NT3A 5FV2V 1XWDB 5FV1V 1NYUB 5HHVA 3BK3A 3S1KV 2H64A 2QCWA 1REUA 2QJ9A 4KV5A 4KZNA 5F3BC 1HRPA 1WQ8A 3MJKA 4UI2B 1HD4A 1VPFA 1KLAA 1WQ9A 5HI5A 2R52A 2R53A 5BQ8D 4BV4L 2PJYA 1QFWB 3IJ2A 5BQEA 1SGFB 1BNDB 3EVSB 3BMPA 1PDGA 5BQ8A 1BJ1V 1VPPV 3V6BA 4N1DA 3V2AA 1WWWV 1XWDA 2QR0C 2ARVA 2X1WA 2IFGE 2QJAA 4EC7A 1FZVA 5HI4A 1HCNB 4HQXA 4HQUA 3B4VA 1FL7B 4QHUC 1REWA 3HH2A 4MQWA 1MKGA 1QFWA 2VXSA 4MPLA 2VPFA 5BQBA 4WPBA 1BNDA 5HK5E 1M4UL 4ZFFC 4YCGC 2ASKA 1ES7A 5BPUA 4MQWB 1AOCA 3BUKA 5HK5A 1KATW 1QTYR 3RJRA 2XACA 1FLTV 2ARPA 1TZHV 4KXZA 2H62A 1HCNA 1BETA 1B8KA 1FL7A 4UI0A 5BQCA 3QB4A 1LX5A 1SG1A 2GYZA 2X1XE 5HHCA 4EDXV 3JVFA 2QCQA 5HI3A 5JZ7A 4FAOA 2FJHV 4AY9B 2GNNA 2C7WA 2TGIA 3P9WA 1DZ7A 3QTKA 1HCFA 1S4YB 5F3HI 5AEJA 2GYRA 1MJVA 2QJBA 4LXRJ 4HR9A 2BHKA 1CZ8V 4HSAA 4UHZA 4LXSJ 3E07A 2XV7A 3EO1C 4UI1A 1B98A 2B0UA 2V5EB 1KLCA 4XPJA 2P6AA 2FJGV 4EAXA 4EFVA 1TGJA 1B8MB 3KFDA 5HHXA 4AY9A 1NYSB 1BTGA 1BMPA 4QAFC 2VWEA 4ZBNA 1E9JA 4MIDA 4YCIC
chains in the Genus database with same CATH superfamily
3S1BV 2KD3A 1JPYA 1MKKA 3FUBB 4UHYA 1HRPB 1WQ9B 4X1JA 1TGKA 1LXIA 1RV6V 1AGQA 2GOOA 3MJGA 1TFGA 1WAQA 4GLSE 1B8MA 1ZKZA 5HHDA 2GH0C 4QCIC 5E4GA 5BQEB 4GLNE 1TZIV 3BDYV 4EDWV 1KTZA 5BQ8B 3SEKB 1M4UA 1NT3A 5FV2V 1XWDB 5FV1V 1NYUB 5HHVA 3BK3A 3S1KV 2H64A 2QCWA 1REUA 2QJ9A 4KV5A 4KZNA 5F3BC 1HRPA 1WQ8A 3MJKA 4UI2B 1HD4A 1VPFA 1KLAA 1WQ9A 5HI5A 2R52A 2R53A 5BQ8D 4BV4L 2PJYA 1QFWB 3IJ2A 5BQEA 1SGFB 1BNDB 3EVSB 3BMPA 1PDGA 5BQ8A 1BJ1V 1VPPV 3V6BA 4N1DA 3V2AA 1WWWV 1XWDA 2QR0C 2ARVA 2X1WA 2IFGE 2QJAA 4EC7A 1FZVA 5HI4A 1HCNB 4HQXA 4HQUA 3B4VA 1FL7B 4QHUC 1REWA 3HH2A 4MQWA 1MKGA 1QFWA 2VXSA 4MPLA 2VPFA 5BQBA 4WPBA 1BNDA 5HK5E 1M4UL 4ZFFC 4YCGC 2ASKA 1ES7A 5BPUA 4MQWB 1AOCA 3BUKA 5HK5A 1KATW 1QTYR 3RJRA 2XACA 1FLTV 2ARPA 1TZHV 4KXZA 2H62A 1HCNA 1BETA 1B8KA 1FL7A 4UI0A 5BQCA 3QB4A 1LX5A 1SG1A 2GYZA 2X1XE 5HHCA 4EDXV 3JVFA 2QCQA 5HI3A 5JZ7A 4FAOA 2FJHV 4AY9B 2GNNA 2C7WA 2TGIA 3P9WA 1DZ7A 3QTKA 1HCFA 1S4YB 5F3HI 5AEJA 2GYRA 1MJVA 2QJBA 4LXRJ 4HR9A 2BHKA 1CZ8V 4HSAA 4UHZA 4LXSJ 3E07A 2XV7A 3EO1C 4UI1A 1B98A 2B0UA 2V5EB 1KLCA 4XPJA 2P6AA 2FJGV 4EAXA 4EFVA 1TGJA 1B8MB 3KFDA 5HHXA 4AY9A 1NYSB 1BTGA 1BMPA 4QAFC 2VWEA 4ZBNA 1E9JA 4MIDA 4YCIC
chains in the Genus database with same CATH topology
3S1BV 2KD3A 1JPYA 1MKKA 3FUBB 4UHYA 1HRPB 1WQ9B 4X1JA 1TGKA 1LXIA 1RV6V 1AGQA 2GOOA 3MJGA 1TFGA 1WAQA 4GLSE 1B8MA 1ZKZA 5HHDA 2GH0C 4QCIC 5E4GA 5BQEB 4GLNE 1TZIV 3BDYV 4EDWV 1KTZA 5BQ8B 3SEKB 1M4UA 1NT3A 5FV2V 1XWDB 5FV1V 1NYUB 5HHVA 3BK3A 3S1KV 2H64A 2QCWA 1REUA 2QJ9A 4KV5A 4KZNA 5F3BC 1HRPA 1WQ8A 3MJKA 4UI2B 1HD4A 1VPFA 1KLAA 1WQ9A 5HI5A 2R52A 2R53A 5BQ8D 4BV4L 2PJYA 1QFWB 3IJ2A 5BQEA 1SGFB 1BNDB 3EVSB 3BMPA 1PDGA 5BQ8A 1BJ1V 1VPPV 3V6BA 4N1DA 3V2AA 1WWWV 1XWDA 2QR0C 2ARVA 2X1WA 2IFGE 2QJAA 4EC7A 1FZVA 5HI4A 1HCNB 4HQXA 4HQUA 3B4VA 1FL7B 4QHUC 1REWA 3HH2A 4MQWA 1MKGA 1QFWA 2VXSA 4MPLA 2VPFA 5BQBA 4WPBA 1BNDA 5HK5E 1M4UL 4ZFFC 4YCGC 2ASKA 1ES7A 5BPUA 4MQWB 1AOCA 3BUKA 5HK5A 1KATW 1QTYR 3RJRA 2XACA 1FLTV 2ARPA 1TZHV 4KXZA 2H62A 1HCNA 1BETA 1B8KA 1FL7A 4UI0A 5BQCA 3QB4A 1LX5A 1SG1A 2GYZA 2X1XE 5HHCA 4EDXV 3JVFA 2QCQA 5HI3A 5JZ7A 4FAOA 2FJHV 4AY9B 2GNNA 2C7WA 2TGIA 3P9WA 1DZ7A 3QTKA 1HCFA 1S4YB 5F3HI 5AEJA 2GYRA 1MJVA 2QJBA 4LXRJ 4HR9A 2BHKA 1CZ8V 4HSAA 4UHZA 4LXSJ 3E07A 2XV7A 3EO1C 4UI1A 1B98A 2B0UA 2V5EB 1KLCA 4XPJA 2P6AA 2FJGV 4EAXA 4EFVA 1TGJA 1B8MB 3KFDA 5HHXA 4AY9A 1NYSB 1BTGA 1BMPA 4QAFC 2VWEA 4ZBNA 1E9JA 4MIDA 4YCIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S1B V;  2KD3 A;  1JPY A;  1MKK A;  3FUB B;  4UHY A;  1HRP B;  1WQ9 B;  4X1J A;  1TGK A;  1LXI A;  1RV6 V;  1AGQ A;  2GOO A;  3MJG A;  1TFG A;  1WAQ A;  4GLS E;  1B8M A;  1ZKZ A;  5HHD A;  2GH0 C;  4QCI C;  5E4G A;  5BQE B;  4GLN E;  1TZI V;  3BDY V;  4EDW V;  1KTZ A;  5BQ8 B;  3SEK B;  1M4U A;  1NT3 A;  5FV2 V;  1XWD B;  5FV1 V;  1NYU B;  5HHV A;  3BK3 A;  3S1K V;  2H64 A;  2QCW A;  1REU A;  2QJ9 A;  4KV5 A;  4KZN A;  5F3B C;  1HRP A;  1WQ8 A;  3MJK A;  4UI2 B;  1HD4 A;  1VPF A;  1KLA A;  1WQ9 A;  5HI5 A;  2R52 A;  2R53 A;  5BQ8 D;  4BV4 L;  2PJY A;  1QFW B;  3IJ2 A;  5BQE A;  1SGF B;  1BND B;  3EVS B;  3BMP A;  1PDG A;  5BQ8 A;  1BJ1 V;  1VPP V;  3V6B A;  4N1D A;  3V2A A;  1WWW V;  1XWD A;  2QR0 C;  2ARV A;  2X1W A;  2IFG E;  2QJA A;  4EC7 A;  1FZV A;  5HI4 A;  1HCN B;  4HQX A;  4HQU A;  3B4V A;  1FL7 B;  4QHU C;  1REW A;  3HH2 A;  4MQW A;  1MKG A;  1QFW A;  2VXS A;  4MPL A;  2VPF A;  5BQB A;  4WPB A;  1BND A;  5HK5 E;  1M4U L;  4ZFF C;  4YCG C;  2ASK A;  1ES7 A;  5BPU A;  4MQW B;  1AOC A;  3BUK A;  5HK5 A;  1KAT W;  1QTY R;  3RJR A;  2XAC A;  1FLT V;  2ARP A;  1TZH V;  4KXZ A;  2H62 A;  1HCN A;  1BET A;  1B8K A;  1FL7 A;  4UI0 A;  5BQC A;  3QB4 A;  1LX5 A;  1SG1 A;  2GYZ A;  2X1X E;  5HHC A;  4EDX V;  3JVF A;  2QCQ A;  5HI3 A;  5JZ7 A;  4FAO A;  2FJH V;  4AY9 B;  2GNN A;  2C7W A;  2TGI A;  3P9W A;  1DZ7 A;  3QTK A;  1HCF A;  1S4Y B;  5F3H I;  5AEJ A;  2GYR A;  1MJV A;  2QJB A;  4LXR J;  4HR9 A;  2BHK A;  1CZ8 V;  4HSA A;  4UHZ A;  4LXS J;  3E07 A;  2XV7 A;  3EO1 C;  4UI1 A;  1B98 A;  2B0U A;  2V5E B;  1KLC A;  4XPJ A;  2P6A A;  2FJG V;  4EAX A;  4EFV A;  1TGJ A;  1B8M B;  3KFD A;  5HHX A;  4AY9 A;  1NYS B;  1BTG A;  1BMP A;  4QAF C;  2VWE A;  4ZBN A;  1E9J A;  4MID A;  4YCI C; 
#chains in the Genus database with same CATH topology
 3S1B V;  2KD3 A;  1JPY A;  1MKK A;  3FUB B;  4UHY A;  1HRP B;  1WQ9 B;  4X1J A;  1TGK A;  1LXI A;  1RV6 V;  1AGQ A;  2GOO A;  3MJG A;  1TFG A;  1WAQ A;  4GLS E;  1B8M A;  1ZKZ A;  5HHD A;  2GH0 C;  4QCI C;  5E4G A;  5BQE B;  4GLN E;  1TZI V;  3BDY V;  4EDW V;  1KTZ A;  5BQ8 B;  3SEK B;  1M4U A;  1NT3 A;  5FV2 V;  1XWD B;  5FV1 V;  1NYU B;  5HHV A;  3BK3 A;  3S1K V;  2H64 A;  2QCW A;  1REU A;  2QJ9 A;  4KV5 A;  4KZN A;  5F3B C;  1HRP A;  1WQ8 A;  3MJK A;  4UI2 B;  1HD4 A;  1VPF A;  1KLA A;  1WQ9 A;  5HI5 A;  2R52 A;  2R53 A;  5BQ8 D;  4BV4 L;  2PJY A;  1QFW B;  3IJ2 A;  5BQE A;  1SGF B;  1BND B;  3EVS B;  3BMP A;  1PDG A;  5BQ8 A;  1BJ1 V;  1VPP V;  3V6B A;  4N1D A;  3V2A A;  1WWW V;  1XWD A;  2QR0 C;  2ARV A;  2X1W A;  2IFG E;  2QJA A;  4EC7 A;  1FZV A;  5HI4 A;  1HCN B;  4HQX A;  4HQU A;  3B4V A;  1FL7 B;  4QHU C;  1REW A;  3HH2 A;  4MQW A;  1MKG A;  1QFW A;  2VXS A;  4MPL A;  2VPF A;  5BQB A;  4WPB A;  1BND A;  5HK5 E;  1M4U L;  4ZFF C;  4YCG C;  2ASK A;  1ES7 A;  5BPU A;  4MQW B;  1AOC A;  3BUK A;  5HK5 A;  1KAT W;  1QTY R;  3RJR A;  2XAC A;  1FLT V;  2ARP A;  1TZH V;  4KXZ A;  2H62 A;  1HCN A;  1BET A;  1B8K A;  1FL7 A;  4UI0 A;  5BQC A;  3QB4 A;  1LX5 A;  1SG1 A;  2GYZ A;  2X1X E;  5HHC A;  4EDX V;  3JVF A;  2QCQ A;  5HI3 A;  5JZ7 A;  4FAO A;  2FJH V;  4AY9 B;  2GNN A;  2C7W A;  2TGI A;  3P9W A;  1DZ7 A;  3QTK A;  1HCF A;  1S4Y B;  5F3H I;  5AEJ A;  2GYR A;  1MJV A;  2QJB A;  4LXR J;  4HR9 A;  2BHK A;  1CZ8 V;  4HSA A;  4UHZ A;  4LXS J;  3E07 A;  2XV7 A;  3EO1 C;  4UI1 A;  1B98 A;  2B0U A;  2V5E B;  1KLC A;  4XPJ A;  2P6A A;  2FJG V;  4EAX A;  4EFV A;  1TGJ A;  1B8M B;  3KFD A;  5HHX A;  4AY9 A;  1NYS B;  1BTG A;  1BMP A;  4QAF C;  2VWE A;  4ZBN A;  1E9J A;  4MID A;  4YCI C; 
#chains in the Genus database with same CATH homology
 3S1B V;  2KD3 A;  1JPY A;  1MKK A;  3FUB B;  4UHY A;  1HRP B;  1WQ9 B;  4X1J A;  1TGK A;  1LXI A;  1RV6 V;  1AGQ A;  2GOO A;  3MJG A;  1TFG A;  1WAQ A;  4GLS E;  1B8M A;  1ZKZ A;  5HHD A;  2GH0 C;  4QCI C;  5E4G A;  5BQE B;  4GLN E;  1TZI V;  3BDY V;  4EDW V;  1KTZ A;  5BQ8 B;  3SEK B;  1M4U A;  1NT3 A;  5FV2 V;  1XWD B;  5FV1 V;  1NYU B;  5HHV A;  3BK3 A;  3S1K V;  2H64 A;  2QCW A;  1REU A;  2QJ9 A;  4KV5 A;  4KZN A;  5F3B C;  1HRP A;  1WQ8 A;  3MJK A;  4UI2 B;  1HD4 A;  1VPF A;  1KLA A;  1WQ9 A;  5HI5 A;  2R52 A;  2R53 A;  5BQ8 D;  4BV4 L;  2PJY A;  1QFW B;  3IJ2 A;  5BQE A;  1SGF B;  1BND B;  3EVS B;  3BMP A;  1PDG A;  5BQ8 A;  1BJ1 V;  1VPP V;  3V6B A;  4N1D A;  3V2A A;  1WWW V;  1XWD A;  2QR0 C;  2ARV A;  2X1W A;  2IFG E;  2QJA A;  4EC7 A;  1FZV A;  5HI4 A;  1HCN B;  4HQX A;  4HQU A;  3B4V A;  1FL7 B;  4QHU C;  1REW A;  3HH2 A;  4MQW A;  1MKG A;  1QFW A;  2VXS A;  4MPL A;  2VPF A;  5BQB A;  4WPB A;  1BND A;  5HK5 E;  1M4U L;  4ZFF C;  4YCG C;  2ASK A;  1ES7 A;  5BPU A;  4MQW B;  1AOC A;  3BUK A;  5HK5 A;  1KAT W;  1QTY R;  3RJR A;  2XAC A;  1FLT V;  2ARP A;  1TZH V;  4KXZ A;  2H62 A;  1HCN A;  1BET A;  1B8K A;  1FL7 A;  4UI0 A;  5BQC A;  3QB4 A;  1LX5 A;  1SG1 A;  2GYZ A;  2X1X E;  5HHC A;  4EDX V;  3JVF A;  2QCQ A;  5HI3 A;  5JZ7 A;  4FAO A;  2FJH V;  4AY9 B;  2GNN A;  2C7W A;  2TGI A;  3P9W A;  1DZ7 A;  3QTK A;  1HCF A;  1S4Y B;  5F3H I;  5AEJ A;  2GYR A;  1MJV A;  2QJB A;  4LXR J;  4HR9 A;  2BHK A;  1CZ8 V;  4HSA A;  4UHZ A;  4LXS J;  3E07 A;  2XV7 A;  3EO1 C;  4UI1 A;  1B98 A;  2B0U A;  2V5E B;  1KLC A;  4XPJ A;  2P6A A;  2FJG V;  4EAX A;  4EFV A;  1TGJ A;  1B8M B;  3KFD A;  5HHX A;  4AY9 A;  1NYS B;  1BTG A;  1BMP A;  4QAF C;  2VWE A;  4ZBN A;  1E9J A;  4MID A;  4YCI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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