2KJ4A

Solution structure of the complex of vek-30 and plasminogen kringle 2
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
87
structure length
87
Chain Sequence
YVEFSEECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRCAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords plasminogen
publication title Solution structure of the complex of VEK-30 and plasminogen kringle 2.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2009-05-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 2kj4A00
2KNFA 1HPKA 3BT2A 5CS9A 1CEBA 3E6PL 5COEA 5CSQA 1I5KA 1A0HA 4BVWA 1CEAA 4D3CA 4NZQA 3U73A 1NL1A 3K65A 1I71A 1NL2A 4HZHA 4BV5A 1PK2A 2L0SA 1KIVA 5CS5A 2K51A 3MKPA 2PF2A 1GMOA 2K4RA 3SP8A 1URKA 2QJ2A 2PF1A 3KIVA 2I9BA 2QJ4A 4KIVA 1PK4A 2PK4A 5CS1A 5HPGA 4BVVA 2HPPP 1PMLA 1PKRA 3BT1A 2KJ4A 5CT1A 1GMNA 3NXPA 4BV7A 3HN4A 3LAQA 1KI0A 1HPJA 1KRNA 2DOHX 1B2IA 2FD6A 1PMKA 2I9AA 4BVCA 1GP9A 4CIKA 5CS3A 2FEBA 2HPQP 2DOIA 4A5TS 4BVDA 5CP9A 1JFNA 2SPTA 5CT3A 1KDUA 1BHTA 1NK1A 4DURA 4O03A 4IUAA 1TPKA 5CT2A
chains in the Genus database with same CATH superfamily
2KNFA 1HPKA 3BT2A 5CS9A 1CEBA 3E6PL 5COEA 5CSQA 1I5KA 1A0HA 4BVWA 1CEAA 4D3CA 4NZQA 3U73A 1NL1A 3K65A 1I71A 1NL2A 4HZHA 4BV5A 1PK2A 2L0SA 1KIVA 5CS5A 2K51A 3MKPA 2PF2A 1GMOA 2K4RA 3SP8A 1URKA 2QJ2A 2PF1A 3KIVA 2I9BA 2QJ4A 4KIVA 1PK4A 2PK4A 5CS1A 5HPGA 4BVVA 2HPPP 1PMLA 1PKRA 3BT1A 2KJ4A 5CT1A 1GMNA 3NXPA 4BV7A 3HN4A 3LAQA 1KI0A 1HPJA 1KRNA 2DOHX 1B2IA 2FD6A 1PMKA 2I9AA 4BVCA 1GP9A 4CIKA 5CS3A 2FEBA 2HPQP 2DOIA 4A5TS 4BVDA 5CP9A 1JFNA 2SPTA 5CT3A 1KDUA 1BHTA 1NK1A 4DURA 4O03A 4IUAA 1TPKA 5CT2A
chains in the Genus database with same CATH topology
2KNFA 1HPKA 3BT2A 5CS9A 1CEBA 3E6PL 5COEA 5CSQA 1I5KA 1A0HA 4BVWA 1CEAA 4D3CA 4NZQA 3U73A 1NL1A 3K65A 1I71A 1NL2A 4HZHA 4BV5A 1PK2A 2L0SA 1KIVA 5CS5A 2K51A 3MKPA 2PF2A 1GMOA 2K4RA 3SP8A 1URKA 2QJ2A 2PF1A 3KIVA 2I9BA 2QJ4A 4KIVA 1PK4A 2PK4A 5CS1A 5HPGA 4BVVA 2HPPP 1PMLA 1PKRA 3BT1A 2KJ4A 5CT1A 1GMNA 3NXPA 4BV7A 3HN4A 3LAQA 1KI0A 1HPJA 1KRNA 2DOHX 1B2IA 2FD6A 1PMKA 2I9AA 4BVCA 1GP9A 4CIKA 5CS3A 2FEBA 2HPQP 2DOIA 4A5TS 4BVDA 5CP9A 1JFNA 2SPTA 5CT3A 1KDUA 1BHTA 1NK1A 4DURA 4O03A 4IUAA 1TPKA 5CT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KNF A;  1HPK A;  3BT2 A;  5CS9 A;  1CEB A;  3E6P L;  5COE A;  5CSQ A;  1I5K A;  1A0H A;  4BVW A;  1CEA A;  4D3C A;  4NZQ A;  3U73 A;  1NL1 A;  3K65 A;  1I71 A;  1NL2 A;  4HZH A;  4BV5 A;  1PK2 A;  2L0S A;  1KIV A;  5CS5 A;  2K51 A;  3MKP A;  2PF2 A;  1GMO A;  2K4R A;  3SP8 A;  1URK A;  2QJ2 A;  2PF1 A;  3KIV A;  2I9B A;  2QJ4 A;  4KIV A;  1PK4 A;  2PK4 A;  5CS1 A;  5HPG A;  4BVV A;  2HPP P;  1PML A;  1PKR A;  3BT1 A;  2KJ4 A;  5CT1 A;  1GMN A;  3NXP A;  4BV7 A;  3HN4 A;  3LAQ A;  1KI0 A;  1HPJ A;  1KRN A;  2DOH X;  1B2I A;  2FD6 A;  1PMK A;  2I9A A;  4BVC A;  1GP9 A;  4CIK A;  5CS3 A;  2FEB A;  2HPQ P;  2DOI A;  4A5T S;  4BVD A;  5CP9 A;  1JFN A;  2SPT A;  5CT3 A;  1KDU A;  1BHT A;  1NK1 A;  4DUR A;  4O03 A;  4IUA A;  1TPK A;  5CT2 A; 
#chains in the Genus database with same CATH topology
 2KNF A;  1HPK A;  3BT2 A;  5CS9 A;  1CEB A;  3E6P L;  5COE A;  5CSQ A;  1I5K A;  1A0H A;  4BVW A;  1CEA A;  4D3C A;  4NZQ A;  3U73 A;  1NL1 A;  3K65 A;  1I71 A;  1NL2 A;  4HZH A;  4BV5 A;  1PK2 A;  2L0S A;  1KIV A;  5CS5 A;  2K51 A;  3MKP A;  2PF2 A;  1GMO A;  2K4R A;  3SP8 A;  1URK A;  2QJ2 A;  2PF1 A;  3KIV A;  2I9B A;  2QJ4 A;  4KIV A;  1PK4 A;  2PK4 A;  5CS1 A;  5HPG A;  4BVV A;  2HPP P;  1PML A;  1PKR A;  3BT1 A;  2KJ4 A;  5CT1 A;  1GMN A;  3NXP A;  4BV7 A;  3HN4 A;  3LAQ A;  1KI0 A;  1HPJ A;  1KRN A;  2DOH X;  1B2I A;  2FD6 A;  1PMK A;  2I9A A;  4BVC A;  1GP9 A;  4CIK A;  5CS3 A;  2FEB A;  2HPQ P;  2DOI A;  4A5T S;  4BVD A;  5CP9 A;  1JFN A;  2SPT A;  5CT3 A;  1KDU A;  1BHT A;  1NK1 A;  4DUR A;  4O03 A;  4IUA A;  1TPK A;  5CT2 A; 
#chains in the Genus database with same CATH homology
 2KNF A;  1HPK A;  3BT2 A;  5CS9 A;  1CEB A;  3E6P L;  5COE A;  5CSQ A;  1I5K A;  1A0H A;  4BVW A;  1CEA A;  4D3C A;  4NZQ A;  3U73 A;  1NL1 A;  3K65 A;  1I71 A;  1NL2 A;  4HZH A;  4BV5 A;  1PK2 A;  2L0S A;  1KIV A;  5CS5 A;  2K51 A;  3MKP A;  2PF2 A;  1GMO A;  2K4R A;  3SP8 A;  1URK A;  2QJ2 A;  2PF1 A;  3KIV A;  2I9B A;  2QJ4 A;  4KIV A;  1PK4 A;  2PK4 A;  5CS1 A;  5HPG A;  4BVV A;  2HPP P;  1PML A;  1PKR A;  3BT1 A;  2KJ4 A;  5CT1 A;  1GMN A;  3NXP A;  4BV7 A;  3HN4 A;  3LAQ A;  1KI0 A;  1HPJ A;  1KRN A;  2DOH X;  1B2I A;  2FD6 A;  1PMK A;  2I9A A;  4BVC A;  1GP9 A;  4CIK A;  5CS3 A;  2FEB A;  2HPQ P;  2DOI A;  4A5T S;  4BVD A;  5CP9 A;  1JFN A;  2SPT A;  5CT3 A;  1KDU A;  1BHT A;  1NK1 A;  4DUR A;  4O03 A;  4IUA A;  1TPK A;  5CT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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