2KKMA

Solution nmr structure of yeast protein yor252w [residues 38-178]: northeast structural genomics consortium target yt654
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
141
structure length
141
Chain Sequence
MREDKIAAKKKLHQDKRVHELARVKFMQDVVNSDTFKGQPIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQVLLQQRRDQELKEFKAGFLCPDLSDAKNMEFLRNWNGTFGLLNTLRLIRINDKGEQVVGGNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords Translation machinery-associated protein 16
publication title Solution NMR structure of yeast protein YOR252W
rcsb
source organism Saccharomyces cerevisiae
total genus 42
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2009-06-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.170 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2kkmA01
2KKMA
chains in the Genus database with same CATH superfamily
4PL4A 4O1PA 4NV2A 2XTQA 4YZ9A 4Z7HA 3AJFA 3FVVA 4U6RA 2V1CC 2BL8A 3Q8DA 2MJFB 3LJ0A 4G75A 4AS2A 3DA3A 4JCVE 3B55A 2BL7A 2RIOA 1U5KA 2P22B 2QZGA 2ZW3A 2V6EA 2GSCA 3VA9A 4OAUC 1W3SA 3UITA 2JB1A 2F66B 4YZDA 2HGKA 2YFAA 4NV5A 2FEFA 2L1LB 2RADA 2F6MB 3DO9A 3IAS1 2XTRA 2RLDA 2XMXA 5LNK1 2IP6A 2QGMA 4YZCA 4Q9VA 2JBWA 3JSBA 3SDJA 3KP9A 4O1OA 2K19A 3I9V1 2YFBA 3LJ1A 4OAVB 2A2DA 4DWLA 4PL5A 3FBVA 3P23A 1YO7A 1JQOA 5HGIA 4PL3A 3FNBA 4AS3A 2A2CA 4GXTA 3DA4A 2FUG1 4G76A 4HEA1 4I1TA 1TDPA 4HFVA 2QSBA 3F4MA 3IAM1 2FU2A 2CAZB 2JB3A 3L0IA 2JAEA 3LJ2A 2ZRRA 2JB2A 2ETDA 1SJ8A 4Z7GA 2KKMA 2E8GA
chains in the Genus database with same CATH topology
4PL4A 4O1PA 4NV2A 2XTQA 4YZ9A 4Z7HA 3AJFA 4U6RA 2V1CC 3Q8DA 2MJFB 3LJ0A 4G75A 4AS2A 3DA3A 4JCVE 2RIOA 1U5KA 2P22B 2V6EA 3VA9A 4OAUC 1W3SA 3UITA 2JB1A 2F66B 4YZDA 2YFAA 4NV5A 2L1LB 3DO9A 2F6MB 3IAS1 2XTRA 2XMXA 5LNK1 2IP6A 4YZCA 4Q9VA 3JSBA 3SDJA 3KP9A 4O1OA 2K19A 3I9V1 2YFBA 3LJ1A 4OAVB 2A2DA 4DWLA 4PL5A 3FBVA 3P23A 1YO7A 5HGIA 4PL3A 4AS3A 2A2CA 4GXTA 3DA4A 2FUG1 4G76A 4HEA1 4I1TA 4HFVA 3F4MA 3IAM1 2CAZB 2JB3A 3L0IA 2JAEA 3LJ2A 2ZRRA 2JB2A 1SJ8A 4Z7GA 2KKMA 2E8GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKM A; 
#chains in the Genus database with same CATH topology
 4PL4 A;  4O1P A;  4NV2 A;  2XTQ A;  4YZ9 A;  4Z7H A;  3AJF A;  3FVV A;  4U6R A;  2V1C C;  2BL8 A;  3Q8D A;  2MJF B;  3LJ0 A;  4G75 A;  4AS2 A;  3DA3 A;  4JCV E;  3B55 A;  2BL7 A;  2RIO A;  1U5K A;  2P22 B;  2QZG A;  2ZW3 A;  2V6E A;  2GSC A;  3VA9 A;  4OAU C;  1W3S A;  3UIT A;  2JB1 A;  2F66 B;  4YZD A;  2HGK A;  2YFA A;  4NV5 A;  2FEF A;  2L1L B;  2RAD A;  2F6M B;  3DO9 A;  3IAS 1;  2XTR A;  2RLD A;  2XMX A;  5LNK 1;  2IP6 A;  2QGM A;  4YZC A;  4Q9V A;  2JBW A;  3JSB A;  3SDJ A;  3KP9 A;  4O1O A;  2K19 A;  3I9V 1;  2YFB A;  3LJ1 A;  4OAV B;  2A2D A;  4DWL A;  4PL5 A;  3FBV A;  3P23 A;  1YO7 A;  1JQO A;  5HGI A;  4PL3 A;  3FNB A;  4AS3 A;  2A2C A;  4GXT A;  3DA4 A;  2FUG 1;  4G76 A;  4HEA 1;  4I1T A;  1TDP A;  4HFV A;  2QSB A;  3F4M A;  3IAM 1;  2FU2 A;  2CAZ B;  2JB3 A;  3L0I A;  2JAE A;  3LJ2 A;  2ZRR A;  2JB2 A;  2ETD A;  1SJ8 A;  4Z7G A;  2KKM A;  2E8G A; 
#chains in the Genus database with same CATH homology
 4PL4 A;  4O1P A;  4NV2 A;  2XTQ A;  4YZ9 A;  4Z7H A;  3AJF A;  4U6R A;  2V1C C;  3Q8D A;  2MJF B;  3LJ0 A;  4G75 A;  4AS2 A;  3DA3 A;  4JCV E;  2RIO A;  1U5K A;  2P22 B;  2V6E A;  3VA9 A;  4OAU C;  1W3S A;  3UIT A;  2JB1 A;  2F66 B;  4YZD A;  2YFA A;  4NV5 A;  2L1L B;  3DO9 A;  2F6M B;  3IAS 1;  2XTR A;  2XMX A;  5LNK 1;  2IP6 A;  4YZC A;  4Q9V A;  3JSB A;  3SDJ A;  3KP9 A;  4O1O A;  2K19 A;  3I9V 1;  2YFB A;  3LJ1 A;  4OAV B;  2A2D A;  4DWL A;  4PL5 A;  3FBV A;  3P23 A;  1YO7 A;  5HGI A;  4PL3 A;  4AS3 A;  2A2C A;  4GXT A;  3DA4 A;  2FUG 1;  4G76 A;  4HEA 1;  4I1T A;  4HFV A;  3F4M A;  3IAM 1;  2CAZ B;  2JB3 A;  3L0I A;  2JAE A;  3LJ2 A;  2ZRR A;  2JB2 A;  1SJ8 A;  4Z7G A;  2KKM A;  2E8G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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