2KKUA

Solution structure of protein af2351 from archaeoglobus fulgidus. northeast structural genomics consortium target att9/ontario center for structural proteomics target af2351
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
139
structure length
139
Chain Sequence
MSKIVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIKPKRLVPVGGQYLRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein
publication title Solution structure of protein af2351 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium target AtT9/Ontario Center for Structural Proteomics Target af2351
rcsb
source organism Archaeoglobus fulgidus
molecule tags Structural genomics, unknown function
total genus 27
structure length 139
sequence length 139
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04033 DUF365 Domain of unknown function (DUF365)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 2kkuA00
2KKUA 1S04A 2DP9A 1WK2A 1XNEA 2E5OA 2Z0TA 1TE7A 3IUWA
chains in the Genus database with same CATH superfamily
3M6UA 1ZE1A 2APOA 2CWWA 3LWPA 3LWRA 2AB4A 1Q7HA 4CI1B 2E5OA 3UAIA 1WXXA 1WXWA 3LJCA 2AUSA 4CI3B 1SQWA 1J2BA 1R3FA 2KKUA 3M6WA 3M6XA 1ZL3A 2FRXA 2DP9A 2J5TA 1WK2A 3M4XA 3LWVA 1ZBOA 1XNEA 2CX0A 1ZS7A 2Z0TA 2RFKA 1IT8A 3IUWA 3HJYA 2B78A 1S04A 3C0KA 4CI2B 3D79A 1ZE2A 3LDFA 4DMGA 1TE7A 2ANEA 3M6VA 3MQKA 3LWOA 3U28A 3M65A 3VSEA 1R3EA 2CX1A 2EY4A 2P38A 1IT7A 2Q07A 4Q1TA 3LWQA 1UOYA 4TZ4C 1K8WA 3HAXA 1IQ8A 3HJWA 2AS0A 1SGVA 2HVYA 3ZV0C 2J5VA 1T5YA
chains in the Genus database with same CATH topology
2KKUA 4C26A 1S04A 2DP9A 1WK2A 1XNEA 2E5OA 2Z0TA 1TE7A 4P78C 3IUWA 1WHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKU A;  1S04 A;  2DP9 A;  1WK2 A;  1XNE A;  2E5O A;  2Z0T A;  1TE7 A;  3IUW A; 
#chains in the Genus database with same CATH topology
 3M6U A;  1ZE1 A;  2APO A;  2CWW A;  3LWP A;  3LWR A;  2AB4 A;  1Q7H A;  4CI1 B;  2E5O A;  3UAI A;  1WXX A;  1WXW A;  3LJC A;  2AUS A;  4CI3 B;  1SQW A;  1J2B A;  1R3F A;  2KKU A;  3M6W A;  3M6X A;  1ZL3 A;  2FRX A;  2DP9 A;  2J5T A;  1WK2 A;  3M4X A;  3LWV A;  1ZBO A;  1XNE A;  2CX0 A;  1ZS7 A;  2Z0T A;  2RFK A;  1IT8 A;  3IUW A;  3HJY A;  2B78 A;  1S04 A;  3C0K A;  4CI2 B;  3D79 A;  1ZE2 A;  3LDF A;  4DMG A;  1TE7 A;  2ANE A;  3M6V A;  3MQK A;  3LWO A;  3U28 A;  3M65 A;  3VSE A;  1R3E A;  2CX1 A;  2EY4 A;  2P38 A;  1IT7 A;  2Q07 A;  4Q1T A;  3LWQ A;  1UOY A;  4TZ4 C;  1K8W A;  3HAX A;  1IQ8 A;  3HJW A;  2AS0 A;  1SGV A;  2HVY A;  3ZV0 C;  2J5V A;  1T5Y A; 
#chains in the Genus database with same CATH homology
 2KKU A;  4C26 A;  1S04 A;  2DP9 A;  1WK2 A;  1XNE A;  2E5O A;  2Z0T A;  1TE7 A;  4P78 C;  3IUW A;  1WHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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