2KKUA

Solution structure of protein af2351 from archaeoglobus fulgidus. northeast structural genomics consortium target att9/ontario center for structural proteomics target af2351
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
139
structure length
139
Chain Sequence
MSKIVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIKPKRLVPVGGQYLRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of protein af2351 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium target AtT9/Ontario Center for Structural Proteomics Target af2351
rcsb
molecule keywords Uncharacterized protein
molecule tags Structural genomics, unknown function
source organism Archaeoglobus fulgidus
total genus 27
structure length 139
sequence length 139
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04033 DUF365 Domain of unknown function (DUF365)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 2kkuA00
2E5OA 3IUWA 2DP9A 1TE7A 2KKUA 2Z0TA 1S04A 1WK2A 1XNEA
chains in the Genus database with same CATH superfamily
1R3EA 3LDFA 1TE7A 4DMGA 1ZE2A 2Z0TA 3LWRA 3HJWA 1WXXA 1WK2A 1UOYA 3UAIA 3LWPA 3LWQA 2RFKA 3ZV0C 4CI1B 2CX0A 1K8WA 4CI3B 2FRXA 4CI2B 3MQKA 2ANEA 3HAXA 2EY4A 2KKUA 3VSEA 2AB4A 3HJYA 1WXWA 1IT7A 1S04A 1Q7HA 1ZS7A 1IT8A 1SGVA 3M6WA 2HVYA 2AS0A 3M6UA 3M6VA 1ZL3A 4TZ4C 1IQ8A 2J5VA 2CWWA 2Q07A 3LWOA 1ZBOA 1SQWA 3U28A 3LWVA 2E5OA 3IUWA 3M65A 2APOA 2DP9A 1T5YA 2P38A 2AUSA 2B78A 3D79A 3M4XA 3M6XA 1J2BA 4Q1TA 1R3FA 3LJCA 2CX1A 1ZE1A 1XNEA 3C0KA 2J5TA
chains in the Genus database with same CATH topology
2E5OA 3IUWA 2DP9A 4P78C 1TE7A 2KKUA 2Z0TA 1S04A 1WK2A 1WHZA 1XNEA 4C26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E5O A;  3IUW A;  2DP9 A;  1TE7 A;  2KKU A;  2Z0T A;  1S04 A;  1WK2 A;  1XNE A; 
#chains in the Genus database with same CATH topology
 1R3E A;  3LDF A;  1TE7 A;  4DMG A;  1ZE2 A;  2Z0T A;  3LWR A;  3HJW A;  1WXX A;  1WK2 A;  1UOY A;  3UAI A;  3LWP A;  3LWQ A;  2RFK A;  3ZV0 C;  4CI1 B;  2CX0 A;  1K8W A;  4CI3 B;  2FRX A;  4CI2 B;  3MQK A;  2ANE A;  3HAX A;  2EY4 A;  2KKU A;  3VSE A;  2AB4 A;  3HJY A;  1WXW A;  1IT7 A;  1S04 A;  1Q7H A;  1ZS7 A;  1IT8 A;  1SGV A;  3M6W A;  2HVY A;  2AS0 A;  3M6U A;  3M6V A;  1ZL3 A;  4TZ4 C;  1IQ8 A;  2J5V A;  2CWW A;  2Q07 A;  3LWO A;  1ZBO A;  1SQW A;  3U28 A;  3LWV A;  2E5O A;  3IUW A;  3M65 A;  2APO A;  2DP9 A;  1T5Y A;  2P38 A;  2AUS A;  2B78 A;  3D79 A;  3M4X A;  3M6X A;  1J2B A;  4Q1T A;  1R3F A;  3LJC A;  2CX1 A;  1ZE1 A;  1XNE A;  3C0K A;  2J5T A; 
#chains in the Genus database with same CATH homology
 2E5O A;  3IUW A;  2DP9 A;  4P78 C;  1TE7 A;  2KKU A;  2Z0T A;  1S04 A;  1WK2 A;  1WHZ A;  1XNE A;  4C26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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