2KL5A

Solution nmr structure of protein yutd from b.subtilis, northeast structural genomics consortium target sr232
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
110
structure length
110
Chain Sequence
MIGMSEKRGEIMILIQNAEFELVHNFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYIYEYCNFGCAYFVLKRIRKLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein yutD
publication title Solution NMR Structure of protein yutD from B.subtilis, Northeast Structural Genomics Consortium Target Target SR232
rcsb
source organism Bacillus subtilis
molecule tags Structural genomics, unknown function
total genus 19
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2009-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06265 DUF1027 Protein of unknown function (DUF1027)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.20 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2kl5A00
2KL5A
chains in the Genus database with same CATH superfamily
4R1AA 4R19A 4R1CA 2YILA 5CS5A 4R1BA 5CSQA 2J8LA 3SP8A 2F83A 1I8NA 3MKPA 1BHTA 2Y8RA 5CT3A 2KL5A 4YIZA 5EOKA 5CT1A 3HMTA 5CT2A 5CS1A 2LL3A 1GP9A 2LL4M 5CS3A 5CP9A 1Z40A 2Q8AA 2QJ4A 2K13X 4IUAA 2J8JA 4UAOA 4YIVA 5EODA 3ZWZA 1W81A 1HKYA 1W8KA 1YXEA 3HN4A 3SRIA 4Z09A 4Z0FA 4Z0EA 4UV6A 2QJ2A 4DURA 2Z8VA 1NK1A 3HMRA 4APLA 5CS9A 1GMNA 2YIOA 5COEA 2X2ZA 3HMSA 3ZLEA 5I25A 2YIPA 2HGFA 4A5TS 4Z0DA 3SRJA 4APMA 2Z8WA 2Q8BA 1GMOA
chains in the Genus database with same CATH topology
4R1AA 4R19A 4R1CA 2YILA 5CS5A 4R1BA 5CSQA 2J8LA 3SP8A 2F83A 1I8NA 3MKPA 1BHTA 2Y8RA 5CT3A 2KL5A 4YIZA 5EOKA 5CT1A 3HMTA 5CT2A 5CS1A 2LL3A 1GP9A 2LL4M 5CS3A 5CP9A 1Z40A 2Q8AA 2QJ4A 2K13X 4IUAA 2J8JA 4UAOA 4YIVA 5EODA 3ZWZA 1W81A 1HKYA 1W8KA 1YXEA 3HN4A 3SRIA 4Z09A 4Z0FA 4Z0EA 4UV6A 2QJ2A 4DURA 2Z8VA 1NK1A 3HMRA 4APLA 5CS9A 1GMNA 2YIOA 5COEA 2X2ZA 3HMSA 3ZLEA 5I25A 2YIPA 2HGFA 4A5TS 4Z0DA 3SRJA 4APMA 2Z8WA 2Q8BA 1GMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KL5 A; 
#chains in the Genus database with same CATH topology
 4R1A A;  4R19 A;  4R1C A;  2YIL A;  5CS5 A;  4R1B A;  5CSQ A;  2J8L A;  3SP8 A;  2F83 A;  1I8N A;  3MKP A;  1BHT A;  2Y8R A;  5CT3 A;  2KL5 A;  4YIZ A;  5EOK A;  5CT1 A;  3HMT A;  5CT2 A;  5CS1 A;  2LL3 A;  1GP9 A;  2LL4 M;  5CS3 A;  5CP9 A;  1Z40 A;  2Q8A A;  2QJ4 A;  2K13 X;  4IUA A;  2J8J A;  4UAO A;  4YIV A;  5EOD A;  3ZWZ A;  1W81 A;  1HKY A;  1W8K A;  1YXE A;  3HN4 A;  3SRI A;  4Z09 A;  4Z0F A;  4Z0E A;  4UV6 A;  2QJ2 A;  4DUR A;  2Z8V A;  1NK1 A;  3HMR A;  4APL A;  5CS9 A;  1GMN A;  2YIO A;  5COE A;  2X2Z A;  3HMS A;  3ZLE A;  5I25 A;  2YIP A;  2HGF A;  4A5T S;  4Z0D A;  3SRJ A;  4APM A;  2Z8W A;  2Q8B A;  1GMO A; 
#chains in the Genus database with same CATH homology
 4R1A A;  4R19 A;  4R1C A;  2YIL A;  5CS5 A;  4R1B A;  5CSQ A;  2J8L A;  3SP8 A;  2F83 A;  1I8N A;  3MKP A;  1BHT A;  2Y8R A;  5CT3 A;  2KL5 A;  4YIZ A;  5EOK A;  5CT1 A;  3HMT A;  5CT2 A;  5CS1 A;  2LL3 A;  1GP9 A;  2LL4 M;  5CS3 A;  5CP9 A;  1Z40 A;  2Q8A A;  2QJ4 A;  2K13 X;  4IUA A;  2J8J A;  4UAO A;  4YIV A;  5EOD A;  3ZWZ A;  1W81 A;  1HKY A;  1W8K A;  1YXE A;  3HN4 A;  3SRI A;  4Z09 A;  4Z0F A;  4Z0E A;  4UV6 A;  2QJ2 A;  4DUR A;  2Z8V A;  1NK1 A;  3HMR A;  4APL A;  5CS9 A;  1GMN A;  2YIO A;  5COE A;  2X2Z A;  3HMS A;  3ZLE A;  5I25 A;  2YIP A;  2HGF A;  4A5T S;  4Z0D A;  3SRJ A;  4APM A;  2Z8W A;  2Q8B A;  1GMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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