2KMPA

Solution structure of intermeidate iia of leeck-derived tryptase inhibitor, ldti.
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
44
structure length
44
Chain Sequence
KKVCACPKILKPVCGSDGRTYANSCIARCNGVSIKSEGSCPTGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Leech-derived tryptase inhibitor C
publication title Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
pubmed doi rcsb
source organism Hirudo medicinalis
total genus 6
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2kmpA00
2BUSA 1KMAA 1NUBA 1Y1BA 2JXDA 1FYBA 1TBQR 1M8CA 1CGII 2NU4I 2JZMA 3OVOA 1OYVI 3HH2C 5JHWC 1SGPI 3TJQA 3SGBI 1TGSI 2N71A 2M5XA 1HPTA 3QTLD 1OVOA 2NU1I 3SGQI 1IW4A 1BUSA 1CT0I 1OMUA 1SGEI 1DS2I 1SGQI 2P6AC 1H0ZA 3B4VC 1LR7A 3SEKC 1HDLA 2QQCA 2JYYA 1LR8A 4SGBI 2V53A 1DS3I 1CT4I 1IY6A 2KMRA 2SGQI 4GI3C 2QQDA 2GKVA 1UVGA 1SGYI 4HGUA 1HJAI 2KMQA 1UUCA 1PPFI 1YU6C 2ERWA 2KMPA 2B0UC 1CGJI 1R0RI 2SGEI 2ARPF 2NU3I 2N52A 2NU0I 1AN1I 2SGDI 1UVFA 2WCYA 1TIHA 1TURA 1N13A 2N17A 5DAEA 2KMOA 1LR9A 1YTPA 1BMOA 1TBRR 2GKTI 1SGDI 2OVOA 1PCEA 1OMTA 2GKRI 1CE3A 4OVOA 1CSOI 1CHOI 1MT1A 1Z7KB 1M8BA 1TUSA 2F3CI 1PJUA 1SGRI 2LEOA 1CT2I 1Y1CA 2XRCA 2SGPI 1IY5A 2NU2I 1SGNI 2SGFI 2KCXA
chains in the Genus database with same CATH superfamily
2BUSA 5FUWA 1KMAA 1WGCA 1NUBA 1Y1BA 5CCMA 2A20A 5HQ8A 2JXDA 1FYBA 1TBQR 3OXLA 2DB6A 1K7TA 1M8CA 3R5CA 1MJ9A 1CGII 2JZMA 2NU4I 3OVOA 4E1PA 1OYVI 1ULKA 2WGCA 1U5KA 3HH2C 3UGIA 4AMLA 1SGPI 3VDUA 3TJQA 3FSYA 3SGBI 5JHWC 3TOAA 2GIVA 1TGSI 1X74A 2OD1A 2N71A 4E1RA 2M5XA 4MPIA 1HPTA 2V1CC 3QAHA 3QTLD 3UEYA 3GOXA 1MJAA 1OVOA 1W3SA 2NU1I 2QQEA 2Y0MA 2UZ3A 3SGQI 1IW4A 2X3TA 1Q9BA 3TO9A 3R5BA 1P9GA 1CT0I 1BUSA 2WVJA 1X4SA 3OL0A 4WP4A 2RIJA 2QQ0A 1OMUA 2YUUA 1SGEI 1DS2I 1SGQI 2OZUA 2P6AC 1H0ZA 2ORWA 3D00A 3VE5A 1XX6A 5J8FA 1PTRA 1LR7A 3B4VC 3SEKC 5EX3A 2FNFX 1HDLA 2CWHA 2QQCA 2JYYA 1R79A 2LB7A 1LR8A 1RFHA 4L9MA 1FAQA 4SGBI 2V53A 1DS3I 5EX0A 1CT4I 1IY6A 2ODDA 1Y8FA 3RU0A 1S20A 1ULNA 2KMRA 3R5AA 1UHAA 2SGQI 1TBOA 4GI3C 2QQDA 2GKVA 1UVGA 1SGYI 4HGUA 4UXHA 1HJAI 1W4RA 2ELIA 3E59A 1Z2IA 1K7VA 2ROWA 5J8CA 5CCLA 3TO6A 2X52A 2YQPA 3MEKA 2KMQA 1UUCA 1PPFI 1XBTA 1YU6C 2GVIA 2ERWA 3PDNA 1V1HA 2JW6A 2KMPA 2K9HA 2B0UC 2DKVA 2W0TA 5E3QA 1CGJI 1R0RI 2SGEI 3R5DA 2ARPF 5FUVA 2NU3I 1FY7A 5FUXA 2N52A 2NU0I 1AN1I 3E2IA 2SGDI 1UVFA 2WCYA 2QPOA 1TIHA 1TURA 4JCVE 2PQ8A 3FSXA 3TOBA 1N13A 2CWFA 3UGDA 2CJSC 2J9RA 2N17A 2UVOA 1WTJA 2LUYA 3CXLA 4FKDA 5DAEA 2J87A 2RC4A 3UOEA 3QWPA 2KMOA 1LR9A 1WKXA 1YTPA 1BMOA 1TBRR 2GKTI 2E73A 1SGDI 2OU2A 1PCEA 1XA6A 2L8EA 2OVOA 5FUYA 1OMTA 9WGAA 3KY9A 4B6DA 2CWGA 1PTQA 3FC3A 2GKRI 1CE3A 3UFFA 2V1CA 2E5RA 3TO7A 4OVOA 1CSOI 1CHOI 2B8TA 1MT1A 2L7XA 1Z7KB 1M8BA 1TUSA 2VRWB 1V1IA 3BJIA 3OXFA 2F3CI 3UGLA 1PJUA 1SGRI 2ORVA 2LEOA 1VDDA 2ENZA 2JA1A 1TBNA 1CT2I 5HI7A 4DNCA 1Y1CA 2XRCA 2N1AB 1FARA 2SGPI 4UXJA 1IY5A 2NU2I 5E3RA 1SGNI 1K7UA 3UEJA 3VDPA 1KBFA 7WGAA 4UXIA 1MJBA 2SGFI 1P9ZA 2ENNA 3OXGA 1NXUA 2DIPA 1ULMA 1KBEA 2KCXA 1TOTA 1WGTA 5E3PA 4A24A 1HEVA
chains in the Genus database with same CATH topology
2BUSA 5FUWA 1KMAA 1NUBA 1Y1BA 5CCMA 2A20A 5HQ8A 2JXDA 1FYBA 1TBQR 3OXLA 2DB6A 1M8CA 1CGII 2JZMA 2NU4I 3OVOA 4E1PA 1OYVI 1U5KA 3HH2C 3UGIA 5JHWC 1SGPI 3VDUA 3TJQA 3SGBI 1TGSI 1X74A 2OD1A 2N71A 4E1RA 2M5XA 1HPTA 2V1CC 3QTLD 3UEYA 3GOXA 1OVOA 1W3SA 2NU1I 2QQEA 2UZ3A 3SGQI 1IW4A 1BUSA 1CT0I 2WVJA 1X4SA 3OL0A 2QQ0A 1OMUA 2YUUA 1SGEI 1DS2I 1SGQI 2P6AC 1H0ZA 2ORWA 3D00A 3VE5A 1XX6A 1PTRA 1LR7A 3B4VC 3SEKC 5EX3A 2FNFX 1HDLA 2QQCA 2JYYA 1R79A 1LR8A 1RFHA 4L9MA 1FAQA 4SGBI 2V53A 1DS3I 5EX0A 1CT4I 1IY6A 2ODDA 1Y8FA 3RU0A 2KMRA 2SGQI 1TBOA 4GI3C 2QQDA 2GKVA 1UVGA 1SGYI 4HGUA 4UXHA 1HJAI 1W4RA 2ELIA 3E59A 2ROWA 5CCLA 2YQPA 3MEKA 2KMQA 1UUCA 1PPFI 1XBTA 1YU6C 2GVIA 2ERWA 3PDNA 1V1HA 2JW6A 2KMPA 2K9HA 2B0UC 2W0TA 1CGJI 1R0RI 2SGEI 2ARPF 5FUVA 2NU3I 5FUXA 2N52A 2NU0I 1AN1I 3E2IA 2SGDI 1UVFA 2WCYA 2QPOA 1TIHA 1TURA 4JCVE 1N13A 3UGDA 2CJSC 2J9RA 2N17A 5DAEA 2LUYA 3CXLA 4FKDA 2J87A 3QWPA 2KMOA 1LR9A 1YTPA 1BMOA 1TBRR 2GKTI 2E73A 1SGDI 2OVOA 1PCEA 1XA6A 2L8EA 5FUYA 1OMTA 3KY9A 4B6DA 1PTQA 3FC3A 2GKRI 1CE3A 3UFFA 2V1CA 2E5RA 4OVOA 1CSOI 1CHOI 2B8TA 1MT1A 2L7XA 1Z7KB 1M8BA 1TUSA 2VRWB 1V1IA 3BJIA 3OXFA 2F3CI 3UGLA 1PJUA 1SGRI 2ORVA 2LEOA 1VDDA 2ENZA 2JA1A 1TBNA 1CT2I 5HI7A 1Y1CA 2XRCA 2N1AB 1FARA 2SGPI 4UXJA 1IY5A 2NU2I 1SGNI 3UEJA 3VDPA 1KBFA 4UXIA 2SGFI 2ENNA 3OXGA 2DIPA 1KBEA 2KCXA 1TOTA 4A24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUS A;  1KMA A;  1NUB A;  1Y1B A;  2JXD A;  1FYB A;  1TBQ R;  1M8C A;  1CGI I;  2NU4 I;  2JZM A;  3OVO A;  1OYV I;  3HH2 C;  5JHW C;  1SGP I;  3TJQ A;  3SGB I;  1TGS I;  2N71 A;  2M5X A;  1HPT A;  3QTL D;  1OVO A;  2NU1 I;  3SGQ I;  1IW4 A;  1BUS A;  1CT0 I;  1OMU A;  1SGE I;  1DS2 I;  1SGQ I;  2P6A C;  1H0Z A;  3B4V C;  1LR7 A;  3SEK C;  1HDL A;  2QQC A;  2JYY A;  1LR8 A;  4SGB I;  2V53 A;  1DS3 I;  1CT4 I;  1IY6 A;  2KMR A;  2SGQ I;  4GI3 C;  2QQD A;  2GKV A;  1UVG A;  1SGY I;  4HGU A;  1HJA I;  2KMQ A;  1UUC A;  1PPF I;  1YU6 C;  2ERW A;  2KMP A;  2B0U C;  1CGJ I;  1R0R I;  2SGE I;  2ARP F;  2NU3 I;  2N52 A;  2NU0 I;  1AN1 I;  2SGD I;  1UVF A;  2WCY A;  1TIH A;  1TUR A;  1N13 A;  2N17 A;  5DAE A;  2KMO A;  1LR9 A;  1YTP A;  1BMO A;  1TBR R;  2GKT I;  1SGD I;  2OVO A;  1PCE A;  1OMT A;  2GKR I;  1CE3 A;  4OVO A;  1CSO I;  1CHO I;  1MT1 A;  1Z7K B;  1M8B A;  1TUS A;  2F3C I;  1PJU A;  1SGR I;  2LEO A;  1CT2 I;  1Y1C A;  2XRC A;  2SGP I;  1IY5 A;  2NU2 I;  1SGN I;  2SGF I;  2KCX A; 
#chains in the Genus database with same CATH topology
 2BUS A;  5FUW A;  1KMA A;  1WGC A;  1NUB A;  1Y1B A;  5CCM A;  2A20 A;  5HQ8 A;  2JXD A;  1FYB A;  1TBQ R;  3OXL A;  2DB6 A;  1K7T A;  1M8C A;  3R5C A;  1MJ9 A;  1CGI I;  2JZM A;  2NU4 I;  3OVO A;  4E1P A;  1OYV I;  1ULK A;  2WGC A;  1U5K A;  3HH2 C;  3UGI A;  4AML A;  1SGP I;  3VDU A;  3TJQ A;  3FSY A;  3SGB I;  5JHW C;  3TOA A;  2GIV A;  1TGS I;  1X74 A;  2OD1 A;  2N71 A;  4E1R A;  2M5X A;  4MPI A;  1HPT A;  2V1C C;  3QAH A;  3QTL D;  3UEY A;  3GOX A;  1MJA A;  1OVO A;  1W3S A;  2NU1 I;  2QQE A;  2Y0M A;  2UZ3 A;  3SGQ I;  1IW4 A;  2X3T A;  1Q9B A;  3TO9 A;  3R5B A;  1P9G A;  1CT0 I;  1BUS A;  2WVJ A;  1X4S A;  3OL0 A;  4WP4 A;  2RIJ A;  2QQ0 A;  1OMU A;  2YUU A;  1SGE I;  1DS2 I;  1SGQ I;  2OZU A;  2P6A C;  1H0Z A;  2ORW A;  3D00 A;  3VE5 A;  1XX6 A;  5J8F A;  1PTR A;  1LR7 A;  3B4V C;  3SEK C;  5EX3 A;  2FNF X;  1HDL A;  2CWH A;  2QQC A;  2JYY A;  1R79 A;  2LB7 A;  1LR8 A;  1RFH A;  4L9M A;  1FAQ A;  4SGB I;  2V53 A;  1DS3 I;  5EX0 A;  1CT4 I;  1IY6 A;  2ODD A;  1Y8F A;  3RU0 A;  1S20 A;  1ULN A;  2KMR A;  3R5A A;  1UHA A;  2SGQ I;  1TBO A;  4GI3 C;  2QQD A;  2GKV A;  1UVG A;  1SGY I;  4HGU A;  4UXH A;  1HJA I;  1W4R A;  2ELI A;  3E59 A;  1Z2I A;  1K7V A;  2ROW A;  5J8C A;  5CCL A;  3TO6 A;  2X52 A;  2YQP A;  3MEK A;  2KMQ A;  1UUC A;  1PPF I;  1XBT A;  1YU6 C;  2GVI A;  2ERW A;  3PDN A;  1V1H A;  2JW6 A;  2KMP A;  2K9H A;  2B0U C;  2DKV A;  2W0T A;  5E3Q A;  1CGJ I;  1R0R I;  2SGE I;  3R5D A;  2ARP F;  5FUV A;  2NU3 I;  1FY7 A;  5FUX A;  2N52 A;  2NU0 I;  1AN1 I;  3E2I A;  2SGD I;  1UVF A;  2WCY A;  2QPO A;  1TIH A;  1TUR A;  4JCV E;  2PQ8 A;  3FSX A;  3TOB A;  1N13 A;  2CWF A;  3UGD A;  2CJS C;  2J9R A;  2N17 A;  2UVO A;  1WTJ A;  2LUY A;  3CXL A;  4FKD A;  5DAE A;  2J87 A;  2RC4 A;  3UOE A;  3QWP A;  2KMO A;  1LR9 A;  1WKX A;  1YTP A;  1BMO A;  1TBR R;  2GKT I;  2E73 A;  1SGD I;  2OU2 A;  1PCE A;  1XA6 A;  2L8E A;  2OVO A;  5FUY A;  1OMT A;  9WGA A;  3KY9 A;  4B6D A;  2CWG A;  1PTQ A;  3FC3 A;  2GKR I;  1CE3 A;  3UFF A;  2V1C A;  2E5R A;  3TO7 A;  4OVO A;  1CSO I;  1CHO I;  2B8T A;  1MT1 A;  2L7X A;  1Z7K B;  1M8B A;  1TUS A;  2VRW B;  1V1I A;  3BJI A;  3OXF A;  2F3C I;  3UGL A;  1PJU A;  1SGR I;  2ORV A;  2LEO A;  1VDD A;  2ENZ A;  2JA1 A;  1TBN A;  1CT2 I;  5HI7 A;  4DNC A;  1Y1C A;  2XRC A;  2N1A B;  1FAR A;  2SGP I;  4UXJ A;  1IY5 A;  2NU2 I;  5E3R A;  1SGN I;  1K7U A;  3UEJ A;  3VDP A;  1KBF A;  7WGA A;  4UXI A;  1MJB A;  2SGF I;  1P9Z A;  2ENN A;  3OXG A;  1NXU A;  2DIP A;  1ULM A;  1KBE A;  2KCX A;  1TOT A;  1WGT A;  5E3P A;  4A24 A;  1HEV A; 
#chains in the Genus database with same CATH homology
 2BUS A;  5FUW A;  1KMA A;  1NUB A;  1Y1B A;  5CCM A;  2A20 A;  5HQ8 A;  2JXD A;  1FYB A;  1TBQ R;  3OXL A;  2DB6 A;  1M8C A;  1CGI I;  2JZM A;  2NU4 I;  3OVO A;  4E1P A;  1OYV I;  1U5K A;  3HH2 C;  3UGI A;  5JHW C;  1SGP I;  3VDU A;  3TJQ A;  3SGB I;  1TGS I;  1X74 A;  2OD1 A;  2N71 A;  4E1R A;  2M5X A;  1HPT A;  2V1C C;  3QTL D;  3UEY A;  3GOX A;  1OVO A;  1W3S A;  2NU1 I;  2QQE A;  2UZ3 A;  3SGQ I;  1IW4 A;  1BUS A;  1CT0 I;  2WVJ A;  1X4S A;  3OL0 A;  2QQ0 A;  1OMU A;  2YUU A;  1SGE I;  1DS2 I;  1SGQ I;  2P6A C;  1H0Z A;  2ORW A;  3D00 A;  3VE5 A;  1XX6 A;  1PTR A;  1LR7 A;  3B4V C;  3SEK C;  5EX3 A;  2FNF X;  1HDL A;  2QQC A;  2JYY A;  1R79 A;  1LR8 A;  1RFH A;  4L9M A;  1FAQ A;  4SGB I;  2V53 A;  1DS3 I;  5EX0 A;  1CT4 I;  1IY6 A;  2ODD A;  1Y8F A;  3RU0 A;  2KMR A;  2SGQ I;  1TBO A;  4GI3 C;  2QQD A;  2GKV A;  1UVG A;  1SGY I;  4HGU A;  4UXH A;  1HJA I;  1W4R A;  2ELI A;  3E59 A;  2ROW A;  5CCL A;  2YQP A;  3MEK A;  2KMQ A;  1UUC A;  1PPF I;  1XBT A;  1YU6 C;  2GVI A;  2ERW A;  3PDN A;  1V1H A;  2JW6 A;  2KMP A;  2K9H A;  2B0U C;  2W0T A;  1CGJ I;  1R0R I;  2SGE I;  2ARP F;  5FUV A;  2NU3 I;  5FUX A;  2N52 A;  2NU0 I;  1AN1 I;  3E2I A;  2SGD I;  1UVF A;  2WCY A;  2QPO A;  1TIH A;  1TUR A;  4JCV E;  1N13 A;  3UGD A;  2CJS C;  2J9R A;  2N17 A;  5DAE A;  2LUY A;  3CXL A;  4FKD A;  2J87 A;  3QWP A;  2KMO A;  1LR9 A;  1YTP A;  1BMO A;  1TBR R;  2GKT I;  2E73 A;  1SGD I;  2OVO A;  1PCE A;  1XA6 A;  2L8E A;  5FUY A;  1OMT A;  3KY9 A;  4B6D A;  1PTQ A;  3FC3 A;  2GKR I;  1CE3 A;  3UFF A;  2V1C A;  2E5R A;  4OVO A;  1CSO I;  1CHO I;  2B8T A;  1MT1 A;  2L7X A;  1Z7K B;  1M8B A;  1TUS A;  2VRW B;  1V1I A;  3BJI A;  3OXF A;  2F3C I;  3UGL A;  1PJU A;  1SGR I;  2ORV A;  2LEO A;  1VDD A;  2ENZ A;  2JA1 A;  1TBN A;  1CT2 I;  5HI7 A;  1Y1C A;  2XRC A;  2N1A B;  1FAR A;  2SGP I;  4UXJ A;  1IY5 A;  2NU2 I;  1SGN I;  3UEJ A;  3VDP A;  1KBF A;  4UXI A;  2SGF I;  2ENN A;  3OXG A;  2DIP A;  1KBE A;  2KCX A;  1TOT A;  4A24 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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