2KMRA

Solution structure of intermediate iic of leech-derived tryptase inhibitor, ldti.
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
44
structure length
44
Chain Sequence
KKVCACPKILKPVCGSDGRTYANSCIARCNGVSIKSEGSCPTGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Leech-derived tryptase inhibitor C
publication title Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor.
pubmed doi rcsb
source organism Hirudo medicinalis
total genus 4
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2kmrA01
1SGDI 1LR8A 3HH2C 2SGPI 1DS2I 1BMOA 1N13A 3OVOA 2NU0I 2KMOA 1AN1I 4SGBI 1MT1A 3B4VC 2XRCA 1CT0I 2KMRA 1M8BA 2NU2I 3QTLD 1SGNI 3SGBI 1TIHA 1OVOA 1UUCA 4HGUA 1SGRI 2KMPA 1PJUA 3SEKC 1YTPA 1SGPI 2SGFI 2SGQI 1UVGA 1OMTA 3SGQI 1HPTA 1UVFA 2GKVA 1CHOI 2ERWA 1H0ZA 2GKRI 2OVOA 3TJQA 2NU3I 2GKTI 1NUBA 1CSOI 1SGEI 2LEOA 1TBQR 1TUSA 1IY6A 1CT4I 1M8CA 1TURA 1LR7A 1CGJI 1Y1CA 2QQDA 1Z7KB 2JXDA 2WCYA 2N71A 2N17A 2SGDI 1IW4A 1KMAA 1SGQI 4GI3C 1TGSI 2KMQA 1LR9A 2ARPF 2P6AC 2M5XA 5DAEA 1SGYI 2F3CI 1PCEA 1OYVI 2KCXA 1CT2I 1YU6C 1OMUA 1TBRR 1IY5A 4OVOA 1BUSA 2QQCA 1DS3I 1PPFI 2B0UC 2NU4I 2SGEI 1HJAI 2JYYA 2N52A 1CE3A 2V53A 2JZMA 5JHWC 1HDLA 1FYBA 1CGII 1R0RI 2BUSA 1Y1BA 2NU1I
chains in the Genus database with same CATH superfamily
2CWHA 5J8FA 1SGDI 1LR8A 1V1IA 3HH2C 2SGPI 3TO7A 3VDPA 1K7UA 3PDNA 1K7VA 1DS2I 1BMOA 5CCLA 3TO9A 1N13A 3UEYA 2LUYA 3OVOA 3QWPA 1KBEA 4DNCA 2NU0I 2KMOA 1AN1I 3FSYA 1MT1A 3B4VC 4SGBI 2XRCA 3UGLA 3R5DA 5FUVA 1Q9BA 1FARA 2ENNA 2J87A 1PTQA 2ORVA 5E3PA 2E73A 2GVIA 1CT0I 2J9RA 1FAQA 2KMRA 5FUWA 1XX6A 5EX3A 4UXHA 3VDUA 1M8BA 4A24A 2NU2I 4E1RA 1UHAA 3QTLD 5FUXA 3UGDA 3OXGA 2QQEA 1W4RA 1SGNI 2VRWB 4JCVE 7WGAA 3SGBI 1TIHA 2ORWA 3CXLA 1OVOA 5E3RA 1R79A 1UUCA 3QAHA 3TO6A 4HGUA 5FUYA 1P9GA 1SGRI 1X4SA 2ENZA 2JW6A 2DKVA 2B8TA 2KMPA 2PQ8A 3MEKA 4UXIA 1PJUA 3R5BA 3RU0A 3BJIA 3FC3A 2QQ0A 3OXFA 3E2IA 5HI7A 2X3TA 3SEKC 1YTPA 1SGPI 3OL0A 2LB7A 1RFHA 2SGFI 2SGQI 2CJSC 2ODDA 1UVGA 1OMTA 3R5CA 3SGQI 1HPTA 1K7TA 1UVFA 2GKVA 1CHOI 2RIJA 5E3QA 2WGCA 3UEJA 2ERWA 3VE5A 1H0ZA 2GKRI 4WP4A 2OVOA 3TJQA 2NU3I 2GKTI 4B6DA 1V1HA 3GOXA 4E1PA 1NUBA 1CSOI 1SGEI 2Y0MA 5EX0A 1MJAA 2LEOA 1TBQR 2A20A 2RC4A 1TOTA 2CWFA 9WGAA 1TUSA 1IY6A 1CT4I 1M8CA 1WKXA 2UVOA 2X52A 4MPIA 4FKDA 1TURA 1LR7A 2DB6A 1MJBA 1CGJI 1ULKA 1W3SA 2YUUA 1Y1CA 2QQDA 1VDDA 3FSXA 1Z7KB 1Y8FA 2JXDA 2WCYA 1P9ZA 2CWGA 2N71A 1PTRA 2N17A 2SGDI 2OZUA 5HQ8A 1IW4A 1KMAA 1SGQI 1S20A 4GI3C 2V1CC 1NXUA 1TGSI 2L8EA 2KMQA 3E59A 1LR9A 3OXLA 1KBFA 2ROWA 4UXJA 2W0TA 3R5AA 5CCMA 2ARPF 2P6AC 2M5XA 2GIVA 5DAEA 1SGYI 2F3CI 1TBNA 3UFFA 1PCEA 1XA6A 3D00A 2YQPA 1OYVI 2KCXA 2NU1I 4L9MA 1CT2I 3UOEA 1YU6C 1OMUA 2DIPA 4AMLA 2ELIA 1X74A 2V1CA 1FY7A 1MJ9A 1TBRR 4OVOA 1IY5A 1BUSA 3TOAA 1U5KA 2QQCA 1XBTA 5J8CA 1DS3I 2E5RA 1PPFI 2B0UC 2N1AB 2NU4I 3KY9A 1ULMA 2SGEI 1HJAI 2OD1A 2JYYA 1WGTA 2OU2A 2N52A 2JA1A 2V53A 1CE3A 1TBOA 2JZMA 1HEVA 1Z2IA 5JHWC 2FNFX 2L7XA 2QPOA 2K9HA 1FYBA 1HDLA 1CGII 2UZ3A 2WVJA 1ULNA 1WTJA 3UGIA 1R0RI 2BUSA 1Y1BA 1WGCA 3TOBA
chains in the Genus database with same CATH topology
1SGDI 1LR8A 1V1IA 3HH2C 2SGPI 3VDPA 3PDNA 1DS2I 1BMOA 5CCLA 1N13A 3UEYA 2LUYA 3OVOA 3QWPA 1KBEA 2NU0I 2KMOA 1AN1I 4SGBI 1MT1A 3B4VC 2XRCA 3UGLA 5FUVA 1FARA 2ENNA 2J87A 1PTQA 2ORVA 2E73A 2GVIA 1CT0I 2J9RA 1FAQA 2KMRA 5FUWA 1XX6A 5EX3A 4UXHA 3VDUA 1M8BA 4A24A 2NU2I 4E1RA 3QTLD 3UGDA 5FUXA 3OXGA 2QQEA 1W4RA 1SGNI 2VRWB 4JCVE 3SGBI 1TIHA 2ORWA 3CXLA 1OVOA 1R79A 1UUCA 4HGUA 5FUYA 1SGRI 1X4SA 2ENZA 2JW6A 2B8TA 2KMPA 3MEKA 3RU0A 4UXIA 1PJUA 3FC3A 3BJIA 2QQ0A 3OXFA 3E2IA 5HI7A 3SEKC 1YTPA 1SGPI 3OL0A 1RFHA 2SGFI 2SGQI 2CJSC 2ODDA 1UVGA 1OMTA 3SGQI 1HPTA 1UVFA 2GKVA 1CHOI 3UEJA 2ERWA 3VE5A 1H0ZA 2GKRI 2OVOA 3TJQA 2NU3I 2GKTI 4B6DA 1V1HA 3GOXA 4E1PA 1NUBA 1CSOI 1SGEI 5EX0A 2LEOA 1TBQR 2A20A 1TOTA 1TUSA 1IY6A 1CT4I 1M8CA 4FKDA 1TURA 1LR7A 2DB6A 1CGJI 1W3SA 2YUUA 1Y1CA 2QQDA 1VDDA 1Z7KB 1Y8FA 2JXDA 2WCYA 2N71A 1PTRA 2N17A 2SGDI 5HQ8A 1IW4A 1KMAA 1SGQI 4GI3C 2V1CC 1TGSI 2L8EA 2KMQA 3E59A 1LR9A 3OXLA 1KBFA 2ROWA 4UXJA 2W0TA 5CCMA 2ARPF 2P6AC 2M5XA 5DAEA 1SGYI 2F3CI 1TBNA 3UFFA 1XA6A 1PCEA 3D00A 2YQPA 1OYVI 2KCXA 4L9MA 1CT2I 1YU6C 1OMUA 2DIPA 2ELIA 1X74A 2V1CA 1TBRR 1IY5A 4OVOA 1BUSA 1U5KA 2QQCA 1XBTA 1DS3I 2E5RA 1PPFI 2B0UC 2N1AB 2NU4I 3KY9A 2SGEI 1HJAI 2OD1A 2JYYA 2N52A 2JA1A 2V53A 1CE3A 1TBOA 2JZMA 5JHWC 2FNFX 2L7XA 2QPOA 2K9HA 1FYBA 1HDLA 1CGII 2UZ3A 2WVJA 3UGIA 1R0RI 2BUSA 1Y1BA 2NU1I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SGD I;  1LR8 A;  3HH2 C;  2SGP I;  1DS2 I;  1BMO A;  1N13 A;  3OVO A;  2NU0 I;  2KMO A;  1AN1 I;  4SGB I;  1MT1 A;  3B4V C;  2XRC A;  1CT0 I;  2KMR A;  1M8B A;  2NU2 I;  3QTL D;  1SGN I;  3SGB I;  1TIH A;  1OVO A;  1UUC A;  4HGU A;  1SGR I;  2KMP A;  1PJU A;  3SEK C;  1YTP A;  1SGP I;  2SGF I;  2SGQ I;  1UVG A;  1OMT A;  3SGQ I;  1HPT A;  1UVF A;  2GKV A;  1CHO I;  2ERW A;  1H0Z A;  2GKR I;  2OVO A;  3TJQ A;  2NU3 I;  2GKT I;  1NUB A;  1CSO I;  1SGE I;  2LEO A;  1TBQ R;  1TUS A;  1IY6 A;  1CT4 I;  1M8C A;  1TUR A;  1LR7 A;  1CGJ I;  1Y1C A;  2QQD A;  1Z7K B;  2JXD A;  2WCY A;  2N71 A;  2N17 A;  2SGD I;  1IW4 A;  1KMA A;  1SGQ I;  4GI3 C;  1TGS I;  2KMQ A;  1LR9 A;  2ARP F;  2P6A C;  2M5X A;  5DAE A;  1SGY I;  2F3C I;  1PCE A;  1OYV I;  2KCX A;  1CT2 I;  1YU6 C;  1OMU A;  1TBR R;  1IY5 A;  4OVO A;  1BUS A;  2QQC A;  1DS3 I;  1PPF I;  2B0U C;  2NU4 I;  2SGE I;  1HJA I;  2JYY A;  2N52 A;  1CE3 A;  2V53 A;  2JZM A;  5JHW C;  1HDL A;  1FYB A;  1CGI I;  1R0R I;  2BUS A;  1Y1B A;  2NU1 I; 
#chains in the Genus database with same CATH topology
 2CWH A;  5J8F A;  1SGD I;  1LR8 A;  1V1I A;  3HH2 C;  2SGP I;  3TO7 A;  3VDP A;  1K7U A;  3PDN A;  1K7V A;  1DS2 I;  1BMO A;  5CCL A;  3TO9 A;  1N13 A;  3UEY A;  2LUY A;  3OVO A;  3QWP A;  1KBE A;  4DNC A;  2NU0 I;  2KMO A;  1AN1 I;  3FSY A;  1MT1 A;  3B4V C;  4SGB I;  2XRC A;  3UGL A;  3R5D A;  5FUV A;  1Q9B A;  1FAR A;  2ENN A;  2J87 A;  1PTQ A;  2ORV A;  5E3P A;  2E73 A;  2GVI A;  1CT0 I;  2J9R A;  1FAQ A;  2KMR A;  5FUW A;  1XX6 A;  5EX3 A;  4UXH A;  3VDU A;  1M8B A;  4A24 A;  2NU2 I;  4E1R A;  1UHA A;  3QTL D;  5FUX A;  3UGD A;  3OXG A;  2QQE A;  1W4R A;  1SGN I;  2VRW B;  4JCV E;  7WGA A;  3SGB I;  1TIH A;  2ORW A;  3CXL A;  1OVO A;  5E3R A;  1R79 A;  1UUC A;  3QAH A;  3TO6 A;  4HGU A;  5FUY A;  1P9G A;  1SGR I;  1X4S A;  2ENZ A;  2JW6 A;  2DKV A;  2B8T A;  2KMP A;  2PQ8 A;  3MEK A;  4UXI A;  1PJU A;  3R5B A;  3RU0 A;  3BJI A;  3FC3 A;  2QQ0 A;  3OXF A;  3E2I A;  5HI7 A;  2X3T A;  3SEK C;  1YTP A;  1SGP I;  3OL0 A;  2LB7 A;  1RFH A;  2SGF I;  2SGQ I;  2CJS C;  2ODD A;  1UVG A;  1OMT A;  3R5C A;  3SGQ I;  1HPT A;  1K7T A;  1UVF A;  2GKV A;  1CHO I;  2RIJ A;  5E3Q A;  2WGC A;  3UEJ A;  2ERW A;  3VE5 A;  1H0Z A;  2GKR I;  4WP4 A;  2OVO A;  3TJQ A;  2NU3 I;  2GKT I;  4B6D A;  1V1H A;  3GOX A;  4E1P A;  1NUB A;  1CSO I;  1SGE I;  2Y0M A;  5EX0 A;  1MJA A;  2LEO A;  1TBQ R;  2A20 A;  2RC4 A;  1TOT A;  2CWF A;  9WGA A;  1TUS A;  1IY6 A;  1CT4 I;  1M8C A;  1WKX A;  2UVO A;  2X52 A;  4MPI A;  4FKD A;  1TUR A;  1LR7 A;  2DB6 A;  1MJB A;  1CGJ I;  1ULK A;  1W3S A;  2YUU A;  1Y1C A;  2QQD A;  1VDD A;  3FSX A;  1Z7K B;  1Y8F A;  2JXD A;  2WCY A;  1P9Z A;  2CWG A;  2N71 A;  1PTR A;  2N17 A;  2SGD I;  2OZU A;  5HQ8 A;  1IW4 A;  1KMA A;  1SGQ I;  1S20 A;  4GI3 C;  2V1C C;  1NXU A;  1TGS I;  2L8E A;  2KMQ A;  3E59 A;  1LR9 A;  3OXL A;  1KBF A;  2ROW A;  4UXJ A;  2W0T A;  3R5A A;  5CCM A;  2ARP F;  2P6A C;  2M5X A;  2GIV A;  5DAE A;  1SGY I;  2F3C I;  1TBN A;  3UFF A;  1PCE A;  1XA6 A;  3D00 A;  2YQP A;  1OYV I;  2KCX A;  2NU1 I;  4L9M A;  1CT2 I;  3UOE A;  1YU6 C;  1OMU A;  2DIP A;  4AML A;  2ELI A;  1X74 A;  2V1C A;  1FY7 A;  1MJ9 A;  1TBR R;  4OVO A;  1IY5 A;  1BUS A;  3TOA A;  1U5K A;  2QQC A;  1XBT A;  5J8C A;  1DS3 I;  2E5R A;  1PPF I;  2B0U C;  2N1A B;  2NU4 I;  3KY9 A;  1ULM A;  2SGE I;  1HJA I;  2OD1 A;  2JYY A;  1WGT A;  2OU2 A;  2N52 A;  2JA1 A;  2V53 A;  1CE3 A;  1TBO A;  2JZM A;  1HEV A;  1Z2I A;  5JHW C;  2FNF X;  2L7X A;  2QPO A;  2K9H A;  1FYB A;  1HDL A;  1CGI I;  2UZ3 A;  2WVJ A;  1ULN A;  1WTJ A;  3UGI A;  1R0R I;  2BUS A;  1Y1B A;  1WGC A;  3TOB A; 
#chains in the Genus database with same CATH homology
 1SGD I;  1LR8 A;  1V1I A;  3HH2 C;  2SGP I;  3VDP A;  3PDN A;  1DS2 I;  1BMO A;  5CCL A;  1N13 A;  3UEY A;  2LUY A;  3OVO A;  3QWP A;  1KBE A;  2NU0 I;  2KMO A;  1AN1 I;  4SGB I;  1MT1 A;  3B4V C;  2XRC A;  3UGL A;  5FUV A;  1FAR A;  2ENN A;  2J87 A;  1PTQ A;  2ORV A;  2E73 A;  2GVI A;  1CT0 I;  2J9R A;  1FAQ A;  2KMR A;  5FUW A;  1XX6 A;  5EX3 A;  4UXH A;  3VDU A;  1M8B A;  4A24 A;  2NU2 I;  4E1R A;  3QTL D;  3UGD A;  5FUX A;  3OXG A;  2QQE A;  1W4R A;  1SGN I;  2VRW B;  4JCV E;  3SGB I;  1TIH A;  2ORW A;  3CXL A;  1OVO A;  1R79 A;  1UUC A;  4HGU A;  5FUY A;  1SGR I;  1X4S A;  2ENZ A;  2JW6 A;  2B8T A;  2KMP A;  3MEK A;  3RU0 A;  4UXI A;  1PJU A;  3FC3 A;  3BJI A;  2QQ0 A;  3OXF A;  3E2I A;  5HI7 A;  3SEK C;  1YTP A;  1SGP I;  3OL0 A;  1RFH A;  2SGF I;  2SGQ I;  2CJS C;  2ODD A;  1UVG A;  1OMT A;  3SGQ I;  1HPT A;  1UVF A;  2GKV A;  1CHO I;  3UEJ A;  2ERW A;  3VE5 A;  1H0Z A;  2GKR I;  2OVO A;  3TJQ A;  2NU3 I;  2GKT I;  4B6D A;  1V1H A;  3GOX A;  4E1P A;  1NUB A;  1CSO I;  1SGE I;  5EX0 A;  2LEO A;  1TBQ R;  2A20 A;  1TOT A;  1TUS A;  1IY6 A;  1CT4 I;  1M8C A;  4FKD A;  1TUR A;  1LR7 A;  2DB6 A;  1CGJ I;  1W3S A;  2YUU A;  1Y1C A;  2QQD A;  1VDD A;  1Z7K B;  1Y8F A;  2JXD A;  2WCY A;  2N71 A;  1PTR A;  2N17 A;  2SGD I;  5HQ8 A;  1IW4 A;  1KMA A;  1SGQ I;  4GI3 C;  2V1C C;  1TGS I;  2L8E A;  2KMQ A;  3E59 A;  1LR9 A;  3OXL A;  1KBF A;  2ROW A;  4UXJ A;  2W0T A;  5CCM A;  2ARP F;  2P6A C;  2M5X A;  5DAE A;  1SGY I;  2F3C I;  1TBN A;  3UFF A;  1XA6 A;  1PCE A;  3D00 A;  2YQP A;  1OYV I;  2KCX A;  4L9M A;  1CT2 I;  1YU6 C;  1OMU A;  2DIP A;  2ELI A;  1X74 A;  2V1C A;  1TBR R;  1IY5 A;  4OVO A;  1BUS A;  1U5K A;  2QQC A;  1XBT A;  1DS3 I;  2E5R A;  1PPF I;  2B0U C;  2N1A B;  2NU4 I;  3KY9 A;  2SGE I;  1HJA I;  2OD1 A;  2JYY A;  2N52 A;  2JA1 A;  2V53 A;  1CE3 A;  1TBO A;  2JZM A;  5JHW C;  2FNF X;  2L7X A;  2QPO A;  2K9H A;  1FYB A;  1HDL A;  1CGI I;  2UZ3 A;  2WVJ A;  3UGI A;  1R0R I;  2BUS A;  1Y1B A;  2NU1 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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