2KMYA

Nmr solution structures of fully oxidised cytochrome c3 from desulfovibrio desulfuricans atcc 27774
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
107
structure length
107
Chain Sequence
APAVPDKPVEVKGSQKTVMFPHAPHEKVECVTCHHLVDGKESYAKCGSSGCHDDLTAKKGEKSLYYVVHARGELKHTSCLACHSKVVAEKPELKKDLTGCAKSKCHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c3
publication title Redox linked conformational changes in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774
pubmed doi rcsb
total genus 7
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2009-08-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2kmyA00
1NEWA 1OFWA 1QN1A 19HCA 3OV0A 3H4NA 1J0OA 4HDLA 1F22A 3CYRA 1LM2A 2YXCA 2N91A 1Z1NX 2FFNA 2LZZA 2KSUA 1A2IA 4HB8A 2E84A 1EHJA 2EWUA 1GM4A 2LDOA 1RWJA 4HB6A 1UP9A 1J0PA 3SJ0X 1AQEA 1QN0A 1HH5A 1OFYA 1WADA 2EWIA 2KMYA 1IT1A 1W7OA 2CYMA 1H29A 2CVCA 2CTHA 1L3OA 3CARA 3H33A 2MZ9A 2Z47A 1GMBA 3SELX 4HC3A 2YYWA 1GYOA 4HAJA 1WR5A 3OUQA 3SJ4X 3BXUA 2CY3A 3CAOA 1OS6A 2A3PA 1MDVA 3OUEA 2BQ4A 1KWJA 3SJ1X 3H34A 1I77A 1CZJA 1UPDA 2A3MA 1DUWA 2BPNA 1GWSA 2EWKA 2YYXA 4HBFA 2CDVA
chains in the Genus database with same CATH superfamily
1NEWA 1OFWA 1QN1A 19HCA 3OV0A 3H4NA 1J0OA 4HDLA 1F22A 3CYRA 1LM2A 2YXCA 2N91A 1Z1NX 2FFNA 2LZZA 2KSUA 1A2IA 4HB8A 2E84A 1EHJA 2EWUA 1GM4A 2LDOA 1RWJA 4HB6A 1UP9A 1J0PA 3SJ0X 1AQEA 1QN0A 1HH5A 1OFYA 1WADA 2EWIA 2KMYA 1IT1A 1W7OA 2CYMA 1H29A 2CVCA 2CTHA 1L3OA 3CARA 3H33A 2MZ9A 2Z47A 1GMBA 3SELX 4HC3A 2YYWA 1GYOA 4HAJA 1WR5A 3OUQA 3SJ4X 3BXUA 2CY3A 3CAOA 1OS6A 2A3PA 1MDVA 3OUEA 2BQ4A 1KWJA 3SJ1X 3H34A 1I77A 1CZJA 1UPDA 2A3MA 1DUWA 2BPNA 1GWSA 2EWKA 2YYXA 4HBFA 2CDVA
chains in the Genus database with same CATH topology
1NEWA 1OFWA 1QN1A 19HCA 3OV0A 3H4NA 1J0OA 4HDLA 1F22A 3CYRA 1LM2A 2YXCA 2N91A 1Z1NX 2FFNA 2LZZA 2KSUA 1A2IA 4HB8A 2E84A 1EHJA 2EWUA 1GM4A 2LDOA 1RWJA 4HB6A 1UP9A 1J0PA 3SJ0X 1AQEA 1QN0A 1HH5A 1OFYA 1WADA 2EWIA 2KMYA 1IT1A 1W7OA 2CYMA 1H29A 2CVCA 2CTHA 1L3OA 3CARA 3H33A 2MZ9A 2Z47A 1GMBA 3SELX 4HC3A 2YYWA 1GYOA 4HAJA 1WR5A 3OUQA 3SJ4X 3BXUA 2CY3A 3CAOA 1OS6A 2A3PA 1MDVA 3OUEA 2BQ4A 1KWJA 3SJ1X 3H34A 1I77A 1CZJA 1UPDA 2A3MA 1DUWA 2BPNA 1GWSA 2EWKA 2YYXA 4HBFA 2CDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NEW A;  1OFW A;  1QN1 A;  19HC A;  3OV0 A;  3H4N A;  1J0O A;  4HDL A;  1F22 A;  3CYR A;  1LM2 A;  2YXC A;  2N91 A;  1Z1N X;  2FFN A;  2LZZ A;  2KSU A;  1A2I A;  4HB8 A;  2E84 A;  1EHJ A;  2EWU A;  1GM4 A;  2LDO A;  1RWJ A;  4HB6 A;  1UP9 A;  1J0P A;  3SJ0 X;  1AQE A;  1QN0 A;  1HH5 A;  1OFY A;  1WAD A;  2EWI A;  2KMY A;  1IT1 A;  1W7O A;  2CYM A;  1H29 A;  2CVC A;  2CTH A;  1L3O A;  3CAR A;  3H33 A;  2MZ9 A;  2Z47 A;  1GMB A;  3SEL X;  4HC3 A;  2YYW A;  1GYO A;  4HAJ A;  1WR5 A;  3OUQ A;  3SJ4 X;  3BXU A;  2CY3 A;  3CAO A;  1OS6 A;  2A3P A;  1MDV A;  3OUE A;  2BQ4 A;  1KWJ A;  3SJ1 X;  3H34 A;  1I77 A;  1CZJ A;  1UPD A;  2A3M A;  1DUW A;  2BPN A;  1GWS A;  2EWK A;  2YYX A;  4HBF A;  2CDV A; 
#chains in the Genus database with same CATH topology
 1NEW A;  1OFW A;  1QN1 A;  19HC A;  3OV0 A;  3H4N A;  1J0O A;  4HDL A;  1F22 A;  3CYR A;  1LM2 A;  2YXC A;  2N91 A;  1Z1N X;  2FFN A;  2LZZ A;  2KSU A;  1A2I A;  4HB8 A;  2E84 A;  1EHJ A;  2EWU A;  1GM4 A;  2LDO A;  1RWJ A;  4HB6 A;  1UP9 A;  1J0P A;  3SJ0 X;  1AQE A;  1QN0 A;  1HH5 A;  1OFY A;  1WAD A;  2EWI A;  2KMY A;  1IT1 A;  1W7O A;  2CYM A;  1H29 A;  2CVC A;  2CTH A;  1L3O A;  3CAR A;  3H33 A;  2MZ9 A;  2Z47 A;  1GMB A;  3SEL X;  4HC3 A;  2YYW A;  1GYO A;  4HAJ A;  1WR5 A;  3OUQ A;  3SJ4 X;  3BXU A;  2CY3 A;  3CAO A;  1OS6 A;  2A3P A;  1MDV A;  3OUE A;  2BQ4 A;  1KWJ A;  3SJ1 X;  3H34 A;  1I77 A;  1CZJ A;  1UPD A;  2A3M A;  1DUW A;  2BPN A;  1GWS A;  2EWK A;  2YYX A;  4HBF A;  2CDV A; 
#chains in the Genus database with same CATH homology
 1NEW A;  1OFW A;  1QN1 A;  19HC A;  3OV0 A;  3H4N A;  1J0O A;  4HDL A;  1F22 A;  3CYR A;  1LM2 A;  2YXC A;  2N91 A;  1Z1N X;  2FFN A;  2LZZ A;  2KSU A;  1A2I A;  4HB8 A;  2E84 A;  1EHJ A;  2EWU A;  1GM4 A;  2LDO A;  1RWJ A;  4HB6 A;  1UP9 A;  1J0P A;  3SJ0 X;  1AQE A;  1QN0 A;  1HH5 A;  1OFY A;  1WAD A;  2EWI A;  2KMY A;  1IT1 A;  1W7O A;  2CYM A;  1H29 A;  2CVC A;  2CTH A;  1L3O A;  3CAR A;  3H33 A;  2MZ9 A;  2Z47 A;  1GMB A;  3SEL X;  4HC3 A;  2YYW A;  1GYO A;  4HAJ A;  1WR5 A;  3OUQ A;  3SJ4 X;  3BXU A;  2CY3 A;  3CAO A;  1OS6 A;  2A3P A;  1MDV A;  3OUE A;  2BQ4 A;  1KWJ A;  3SJ1 X;  3H34 A;  1I77 A;  1CZJ A;  1UPD A;  2A3M A;  1DUW A;  2BPN A;  1GWS A;  2EWK A;  2YYX A;  4HBF A;  2CDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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