2KNGA

Solution structure of c-domain of lsr2
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
55
structure length
55
Chain Sequence
SGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAATLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
molecule keywords Protein lsr2
publication title Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 14
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2009-08-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.890.50 Mainly Alpha Up-down Bundle cAMP-dependent Protein Kinase, Chain A cAMP-dependent Protein Kinase, Chain A 2kngA01
2KNGA
chains in the Genus database with same CATH superfamily
3ACTA 3IM4A 3QG0A 2DRNA 2I15A 3QFYA 2RQYA 3IM3A 3ACSA 3RSYA 2CQTA 3QDEA 2KYGA 4ZP3A 2H9RA 4RTAA 3UFEA 2IZYA 4F9KA 2CBGA 3S4DA 3S4AA 3S4BA 2OUTA 3GWHA 3AFJA 1R2AA 2CB9A 3QFZA 2CQSA 1L6EA 3PMIA 3S4CA 3G36A 4RIQA 5HVZA 2EZWA 3RRSA 2KNGA 4RT4A 2K9QA
chains in the Genus database with same CATH topology
2OUTA 3PMIA 3GWHA 2CB9A 2KNGA 3UFEA 2K9QA 2RQYA 2CBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KNG A; 
#chains in the Genus database with same CATH topology
 3ACT A;  3IM4 A;  3QG0 A;  2DRN A;  2I15 A;  3QFY A;  2RQY A;  3IM3 A;  3ACS A;  3RSY A;  2CQT A;  3QDE A;  2KYG A;  4ZP3 A;  2H9R A;  4RTA A;  3UFE A;  2IZY A;  4F9K A;  2CBG A;  3S4D A;  3S4A A;  3S4B A;  2OUT A;  3GWH A;  3AFJ A;  1R2A A;  2CB9 A;  3QFZ A;  2CQS A;  1L6E A;  3PMI A;  3S4C A;  3G36 A;  4RIQ A;  5HVZ A;  2EZW A;  3RRS A;  2KNG A;  4RT4 A;  2K9Q A; 
#chains in the Genus database with same CATH homology
 2OUT A;  3PMI A;  3GWH A;  2CB9 A;  2KNG A;  3UFE A;  2K9Q A;  2RQY A;  2CBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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