2KQVA

Sars coronavirus-unique domain (sud): three-domain molecular architecture in solution and rna binding. i: structure of the sud-m domain of sud-mc
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
129
structure length
129
Chain Sequence
GSHMGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Non-structural protein 3
publication title SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding.
pubmed doi rcsb
source organism Sars coronavirus
total genus 28
structure length 129
sequence length 129
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2009-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12124 Nsp3_PL2pro Coronavirus polyprotein cleavage domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2kqvA01
2RNKA 2JZFA 2JZEA 2W2GA 2KQVA 2WCTA 2JZDA
chains in the Genus database with same CATH superfamily
3JZTA 3EKEA 5FSUA 1LAPA 2FAVA 5FSYA 3GQEA 3V45A 2JZDA 1ZR5A 5DUSA 4ETKA 4J5QA 2VRIA 5FSZA 3Q71A 3GQOA 2DX6A 1ZR3A 3PEIA 2BFQA 4K3NA 4JLLA 2AFCA 1HJZA 4KSIA 2FXKA 4KYBA 2XD7A 5FSXA 2EEEA 3EWPA 4J4ZA 4R7MA 3KQXA 5HOLA 2WCTA 3SIJA 4ZY0A 2BFRA 1TXZA 5FSVA 2EWBA 5CB3A 3EJGA 1GYTA 3VFQA 4TU0A 1LANA 4IQYA 3V2BA 3KR4A 2JZEA 3EWRA 4JVVA 3Q6ZA 4ZX8A 5CBMA 4K0CA 3GPQA 2RNKA 3H8GA 5E3BA 3SIIA 2FG1A 2J9AA 4GVVA 1BLLE 3IIDA 4ESSA 4ZY2A 3H8EA 4ZYQA 4ZI6A 3KR5A 4ZY1A 1BPNA 3KZWA 3KQZA 2ACFA 3EWQA 1TY8A 2W2GA 4JGKA 4J5SA 2KQVA 1BPMA 2JZFA 3T8WA 5HIHA 1LCPA 1SPVA 3EW5A 3IIFA 4ETJA 4GUAA 2LGRA 5AILA 3IJ3A 4R76A 3SIHA 3SIGA 3EJFA 4UMLA 1YD9A 1VHUA 5CMSA 3H8FA 4D86A 1LAMA 3EWOA 2X47A 4ABLA 2L8RA 4ABKA 3JRUA 3GPGA 5CB5A 4ZX9A 4GVWA 4R6TA 4JCAA 4J5RA 3ETIA 3GPOA 1NJRA 5D8NA 4X2TA
chains in the Genus database with same CATH topology
2RNKA 2JZFA 2JZEA 2W2GA 2KQVA 2WCTA 2JZDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RNK A;  2JZF A;  2JZE A;  2W2G A;  2KQV A;  2WCT A;  2JZD A; 
#chains in the Genus database with same CATH topology
 3JZT A;  3EKE A;  5FSU A;  1LAP A;  2FAV A;  5FSY A;  3GQE A;  3V45 A;  2JZD A;  1ZR5 A;  5DUS A;  4ETK A;  4J5Q A;  2VRI A;  5FSZ A;  3Q71 A;  3GQO A;  2DX6 A;  1ZR3 A;  3PEI A;  2BFQ A;  4K3N A;  4JLL A;  2AFC A;  1HJZ A;  4KSI A;  2FXK A;  4KYB A;  2XD7 A;  5FSX A;  2EEE A;  3EWP A;  4J4Z A;  4R7M A;  3KQX A;  5HOL A;  2WCT A;  3SIJ A;  4ZY0 A;  2BFR A;  1TXZ A;  5FSV A;  2EWB A;  5CB3 A;  3EJG A;  1GYT A;  3VFQ A;  4TU0 A;  1LAN A;  4IQY A;  3V2B A;  3KR4 A;  2JZE A;  3EWR A;  4JVV A;  3Q6Z A;  4ZX8 A;  5CBM A;  4K0C A;  3GPQ A;  2RNK A;  3H8G A;  5E3B A;  3SII A;  2FG1 A;  2J9A A;  4GVV A;  1BLL E;  3IID A;  4ESS A;  4ZY2 A;  3H8E A;  4ZYQ A;  4ZI6 A;  3KR5 A;  4ZY1 A;  1BPN A;  3KZW A;  3KQZ A;  2ACF A;  3EWQ A;  1TY8 A;  2W2G A;  4JGK A;  4J5S A;  2KQV A;  1BPM A;  2JZF A;  3T8W A;  5HIH A;  1LCP A;  1SPV A;  3EW5 A;  3IIF A;  4ETJ A;  4GUA A;  2LGR A;  5AIL A;  3IJ3 A;  4R76 A;  3SIH A;  3SIG A;  3EJF A;  4UML A;  1YD9 A;  1VHU A;  5CMS A;  3H8F A;  4D86 A;  1LAM A;  3EWO A;  2X47 A;  4ABL A;  2L8R A;  4ABK A;  3JRU A;  3GPG A;  5CB5 A;  4ZX9 A;  4GVW A;  4R6T A;  4JCA A;  4J5R A;  3ETI A;  3GPO A;  1NJR A;  5D8N A;  4X2T A; 
#chains in the Genus database with same CATH homology
 2RNK A;  2JZF A;  2JZE A;  2W2G A;  2KQV A;  2WCT A;  2JZD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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