2KUIA

Nmr structure of the pasta domain of mycobacterium tuberculosis of pknb
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
272
structure length
272
Chain Sequence
GITRDVQVPDVRGQSSADAIATLQNRGFKIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNVSTGPEQREIPDVSTLTYAEAVKKLTAAGFGRFKQANSPSTPELVGKVIGTNPPANQTSAITNVVIIIVGSGPATKDIPDVAGQTVDVAQKNLNVYGFTKFSQASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQFVMPDLSGMFWVDAEPRLRALGWTGMLDKGADVDAGGSQHNRVVYQNPPAGTGVNRDGIITLRFGQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Serine/threonine-protein kinase pknB
publication title The structure of PknB extracellular PASTA domain from mycobacterium tuberculosis suggests a ligand-dependent kinase activation
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 61
structure length 272
sequence length 272
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2010-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03793 PASTA PASTA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 2kuiA02
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 2kuiA03
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 2kuiA01
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 2kuiA04
3M9GA 5E0ZA 2KUDA 2MGVA 2KUEA 5E10A 3OUVA 2KUFA 3PY9A 2KUIA 5E0YA
chains in the Genus database with same CATH superfamily
2SECI 1Y3DI 1MEEI 5E0ZA 2KUDA 1TECI 1TM5I 1Y48I 1TO2I 1TM1I 5E10A 5FBZB 3PY9A 1LW6I 5E0YA 1CISA 1SIBI 1ACBI 2CI2I 2MGVA 4B1TB 1TM4I 1DWMA 1Y33I 1Y1KI 3RDZC 1SBNI 4B2AB 1Y3BI 1YPCI 4B2BB 1TM7I 4B2CB 1EGLA 1Y4DI 1HYMA 1TINA 1YPAI 1YPBI 3OUVA 1VBWA 2KUFA 1Y4AI 1MITA 3RDYA 4H4FB 3M9GA 1TMGI 5FFNI 3W0DA 1COAI 3W0EA 2SNII 2KUEA 1Y3CI 1TM3I 1CSEI 3CI2A 1Y3FI 1Y34I 2TECI 1TO1I 3TECI 2KUIA
chains in the Genus database with same CATH topology
3M9GA 5E0ZA 2KUDA 2MGVA 2KUEA 5E10A 3OUVA 2KUFA 3PY9A 2KUIA 5E0YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M9G A;  5E0Z A;  2KUD A;  2MGV A;  2KUE A;  5E10 A;  3OUV A;  2KUF A;  3PY9 A;  2KUI A;  5E0Y A; 
#chains in the Genus database with same CATH topology
 2SEC I;  1Y3D I;  1MEE I;  5E0Z A;  2KUD A;  1TEC I;  1TM5 I;  1Y48 I;  1TO2 I;  1TM1 I;  5E10 A;  5FBZ B;  3PY9 A;  1LW6 I;  5E0Y A;  1CIS A;  1SIB I;  1ACB I;  2CI2 I;  2MGV A;  4B1T B;  1TM4 I;  1DWM A;  1Y33 I;  1Y1K I;  3RDZ C;  1SBN I;  4B2A B;  1Y3B I;  1YPC I;  4B2B B;  1TM7 I;  4B2C B;  1EGL A;  1Y4D I;  1HYM A;  1TIN A;  1YPA I;  1YPB I;  3OUV A;  1VBW A;  2KUF A;  1Y4A I;  1MIT A;  3RDY A;  4H4F B;  3M9G A;  1TMG I;  5FFN I;  3W0D A;  1COA I;  3W0E A;  2SNI I;  2KUE A;  1Y3C I;  1TM3 I;  1CSE I;  3CI2 A;  1Y3F I;  1Y34 I;  2TEC I;  1TO1 I;  3TEC I;  2KUI A; 
#chains in the Genus database with same CATH homology
 3M9G A;  5E0Z A;  2KUD A;  2MGV A;  2KUE A;  5E10 A;  3OUV A;  2KUF A;  3PY9 A;  2KUI A;  5E0Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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