2KVKA

Solution structure of adf/cofilin (ldcof) from leishmania donovani
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
144
structure length
144
Chain Sequence
MAISGVTLEESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPIQANDESGLDAEEIIRKVRLHRSVAAALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone
molecule keywords Actin severing and dynamics regulatory protein
publication title Solution structure and dynamics of ADF/cofilin from Leishmania donovani
pubmed doi rcsb
source organism Leishmania donovani
total genus 46
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2010-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2kvkA00
4PKIG 1NM1G 5A1MA 1PD1A 4S10C 2FH1A 1H1VG 3EG9B 3L50A 1T3XA 2D8BA 2W0IA 4KEDA 5FAEA 2NUPA 1SVQA 2NUTA 5KYUA 1NLVG 3EGXA 3Q2BA 1M2VB 5DD2A 1PD0A 1D0NA 5KYXB 1TVJA 3EH2A 2L72A 3DAWB 3FFNA 4CBXG 1PCXA 3CI5G 1NMDG 1NPHA 1T3YA 1P8XA 5HVKB 3A5MS 1EQYS 4PKHB 3A5NS 2LJ8A 5HVKD 1RGIG 1C0GS 2KVKA 2XF1A 4KEEA 1CNUA 4KEFA 1WNJA 5KYYA 2NUPB 2NUTB 3EFOA 1VKKA 5KYUB 1CFYA 2FF6G 3EGXB 1T2LA 1J72A 1F7SA 4JD2H 1WM4A 1Q8GA 1T44G 1JHWA 4BEX1 2LLFA 3EGDB 1QPVA 5KYWA 3A5LS 5L6WC 1DEJS 1C0FS 2FH4A 3FG6A 2LXXA 4PKGG 4CBUG 5IVUA 1TMWA 2I2QA 1AK6A 1HQZ1 4Z94G 2FGHA 2VILA 3EH1A 2FH2A 1KCQA 1AK7A 3FG7A 1Q8XA 1X67A 3CJCG 3EFOB 1UDMA 3CIPG 3CJBG 2VIKA 2XFAA 1P8ZG 1D4XG 5KYNA 1YAGG 2FF3A 2FH3A 3EG9A 2VACA 1SVYA 3TU5B 5KYWB 2QTVA 2MP4A 1ESVS 4LIZA 1M2VA 1M2OA 2HD7A 1VFQA 1YVNG 3A5OS 5FAFA 5KYXA 1MDUA 1SVRA 4CBWG 1M4JA 1COFA 3EGDA 1V6FA 1AHQA 2MV2A 2MOTA 5KYYB 1WFSA 3FFKA
chains in the Genus database with same CATH superfamily
4PKIG 1NM1G 5A1MA 1PD1A 4S10C 2FH1A 1H1VG 3EG9B 3L50A 1T3XA 2D8BA 2W0IA 4KEDA 5FAEA 2NUPA 1SVQA 2NUTA 5KYUA 1NLVG 3EGXA 3Q2BA 1M2VB 5DD2A 1PD0A 1D0NA 5KYXB 1TVJA 3EH2A 2L72A 3DAWB 3FFNA 4CBXG 1PCXA 3CI5G 1NMDG 1NPHA 1T3YA 1P8XA 5HVKB 3A5MS 1EQYS 4PKHB 3A5NS 2LJ8A 5HVKD 1RGIG 1C0GS 2KVKA 2XF1A 4KEEA 1CNUA 4KEFA 1WNJA 5KYYA 2NUPB 2NUTB 3EFOA 1VKKA 5KYUB 1CFYA 2FF6G 3EGXB 1T2LA 1J72A 1F7SA 4JD2H 1WM4A 1Q8GA 1T44G 1JHWA 4BEX1 2LLFA 3EGDB 3DA7A 1QPVA 5KYWA 3A5LS 5L6WC 1DEJS 1C0FS 2FH4A 3FG6A 2LXXA 4PKGG 4CBUG 5IVUA 1TMWA 2I2QA 1AK6A 1HQZ1 4Z94G 2FGHA 2VILA 3EH1A 2FH2A 1KCQA 1AK7A 3FG7A 1Q8XA 1X67A 3CJCG 3EFOB 1UDMA 3CIPG 3CJBG 2VIKA 2XFAA 1P8ZG 1D4XG 5KYNA 1YAGG 2FF3A 2FH3A 3EG9A 2VACA 1SVYA 3TU5B 5KYWB 2QTVA 2MP4A 1ESVS 4LIZA 1M2VA 1M2OA 2HD7A 1VFQA 1YVNG 3A5OS 5FAFA 5KYXA 1MDUA 1SVRA 4CBWG 1M4JA 1COFA 3EGDA 1V6FA 1AHQA 2MV2A 2MOTA 5KYYB 1WFSA 3FFKA
chains in the Genus database with same CATH topology
4PKIG 1NM1G 5A1MA 1PD1A 4S10C 2FH1A 1H1VG 3EG9B 3L50A 1T3XA 2D8BA 2W0IA 4KEDA 5FAEA 2NUPA 1SVQA 2NUTA 5KYUA 1NLVG 3EGXA 3Q2BA 1M2VB 5DD2A 1PD0A 1D0NA 5KYXB 1TVJA 3EH2A 2L72A 3DAWB 3FFNA 4CBXG 1PCXA 3CI5G 1NMDG 1NPHA 1T3YA 1P8XA 5HVKB 3A5MS 1EQYS 4PKHB 3A5NS 2LJ8A 5HVKD 1RGIG 1C0GS 2KVKA 2XF1A 4KEEA 1CNUA 4KEFA 1WNJA 5KYYA 2NUPB 2NUTB 3EFOA 1VKKA 5KYUB 1CFYA 2FF6G 3EGXB 1T2LA 1J72A 1F7SA 4JD2H 1WM4A 1Q8GA 1T44G 1JHWA 4BEX1 2LLFA 3EGDB 3DA7A 1QPVA 5KYWA 3A5LS 5L6WC 1DEJS 1C0FS 2FH4A 3FG6A 2LXXA 4PKGG 4CBUG 5IVUA 1TMWA 2I2QA 1AK6A 1HQZ1 4Z94G 2FGHA 2VILA 3EH1A 2FH2A 1KCQA 1AK7A 3FG7A 1Q8XA 1X67A 3CJCG 3EFOB 1UDMA 3CIPG 3CJBG 2VIKA 2XFAA 1P8ZG 1D4XG 5KYNA 1YAGG 2FF3A 2FH3A 3EG9A 2VACA 1SVYA 3TU5B 5KYWB 2QTVA 2MP4A 1ESVS 4LIZA 1M2VA 1M2OA 2HD7A 1VFQA 1YVNG 3A5OS 5FAFA 5KYXA 1MDUA 1SVRA 4CBWG 1M4JA 1COFA 3EGDA 1V6FA 1AHQA 2MV2A 2MOTA 5KYYB 1WFSA 3FFKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKI G;  1NM1 G;  5A1M A;  1PD1 A;  4S10 C;  2FH1 A;  1H1V G;  3EG9 B;  3L50 A;  1T3X A;  2D8B A;  2W0I A;  4KED A;  5FAE A;  2NUP A;  1SVQ A;  2NUT A;  5KYU A;  1NLV G;  3EGX A;  3Q2B A;  1M2V B;  5DD2 A;  1PD0 A;  1D0N A;  5KYX B;  1TVJ A;  3EH2 A;  2L72 A;  3DAW B;  3FFN A;  4CBX G;  1PCX A;  3CI5 G;  1NMD G;  1NPH A;  1T3Y A;  1P8X A;  5HVK B;  3A5M S;  1EQY S;  4PKH B;  3A5N S;  2LJ8 A;  5HVK D;  1RGI G;  1C0G S;  2KVK A;  2XF1 A;  4KEE A;  1CNU A;  4KEF A;  1WNJ A;  5KYY A;  2NUP B;  2NUT B;  3EFO A;  1VKK A;  5KYU B;  1CFY A;  2FF6 G;  3EGX B;  1T2L A;  1J72 A;  1F7S A;  4JD2 H;  1WM4 A;  1Q8G A;  1T44 G;  1JHW A;  4BEX 1;  2LLF A;  3EGD B;  1QPV A;  5KYW A;  3A5L S;  5L6W C;  1DEJ S;  1C0F S;  2FH4 A;  3FG6 A;  2LXX A;  4PKG G;  4CBU G;  5IVU A;  1TMW A;  2I2Q A;  1AK6 A;  1HQZ 1;  4Z94 G;  2FGH A;  2VIL A;  3EH1 A;  2FH2 A;  1KCQ A;  1AK7 A;  3FG7 A;  1Q8X A;  1X67 A;  3CJC G;  3EFO B;  1UDM A;  3CIP G;  3CJB G;  2VIK A;  2XFA A;  1P8Z G;  1D4X G;  5KYN A;  1YAG G;  2FF3 A;  2FH3 A;  3EG9 A;  2VAC A;  1SVY A;  3TU5 B;  5KYW B;  2QTV A;  2MP4 A;  1ESV S;  4LIZ A;  1M2V A;  1M2O A;  2HD7 A;  1VFQ A;  1YVN G;  3A5O S;  5FAF A;  5KYX A;  1MDU A;  1SVR A;  4CBW G;  1M4J A;  1COF A;  3EGD A;  1V6F A;  1AHQ A;  2MV2 A;  2MOT A;  5KYY B;  1WFS A;  3FFK A; 
#chains in the Genus database with same CATH topology
 4PKI G;  1NM1 G;  5A1M A;  1PD1 A;  4S10 C;  2FH1 A;  1H1V G;  3EG9 B;  3L50 A;  1T3X A;  2D8B A;  2W0I A;  4KED A;  5FAE A;  2NUP A;  1SVQ A;  2NUT A;  5KYU A;  1NLV G;  3EGX A;  3Q2B A;  1M2V B;  5DD2 A;  1PD0 A;  1D0N A;  5KYX B;  1TVJ A;  3EH2 A;  2L72 A;  3DAW B;  3FFN A;  4CBX G;  1PCX A;  3CI5 G;  1NMD G;  1NPH A;  1T3Y A;  1P8X A;  5HVK B;  3A5M S;  1EQY S;  4PKH B;  3A5N S;  2LJ8 A;  5HVK D;  1RGI G;  1C0G S;  2KVK A;  2XF1 A;  4KEE A;  1CNU A;  4KEF A;  1WNJ A;  5KYY A;  2NUP B;  2NUT B;  3EFO A;  1VKK A;  5KYU B;  1CFY A;  2FF6 G;  3EGX B;  1T2L A;  1J72 A;  1F7S A;  4JD2 H;  1WM4 A;  1Q8G A;  1T44 G;  1JHW A;  4BEX 1;  2LLF A;  3EGD B;  3DA7 A;  1QPV A;  5KYW A;  3A5L S;  5L6W C;  1DEJ S;  1C0F S;  2FH4 A;  3FG6 A;  2LXX A;  4PKG G;  4CBU G;  5IVU A;  1TMW A;  2I2Q A;  1AK6 A;  1HQZ 1;  4Z94 G;  2FGH A;  2VIL A;  3EH1 A;  2FH2 A;  1KCQ A;  1AK7 A;  3FG7 A;  1Q8X A;  1X67 A;  3CJC G;  3EFO B;  1UDM A;  3CIP G;  3CJB G;  2VIK A;  2XFA A;  1P8Z G;  1D4X G;  5KYN A;  1YAG G;  2FF3 A;  2FH3 A;  3EG9 A;  2VAC A;  1SVY A;  3TU5 B;  5KYW B;  2QTV A;  2MP4 A;  1ESV S;  4LIZ A;  1M2V A;  1M2O A;  2HD7 A;  1VFQ A;  1YVN G;  3A5O S;  5FAF A;  5KYX A;  1MDU A;  1SVR A;  4CBW G;  1M4J A;  1COF A;  3EGD A;  1V6F A;  1AHQ A;  2MV2 A;  2MOT A;  5KYY B;  1WFS A;  3FFK A; 
#chains in the Genus database with same CATH homology
 4PKI G;  1NM1 G;  5A1M A;  1PD1 A;  4S10 C;  2FH1 A;  1H1V G;  3EG9 B;  3L50 A;  1T3X A;  2D8B A;  2W0I A;  4KED A;  5FAE A;  2NUP A;  1SVQ A;  2NUT A;  5KYU A;  1NLV G;  3EGX A;  3Q2B A;  1M2V B;  5DD2 A;  1PD0 A;  1D0N A;  5KYX B;  1TVJ A;  3EH2 A;  2L72 A;  3DAW B;  3FFN A;  4CBX G;  1PCX A;  3CI5 G;  1NMD G;  1NPH A;  1T3Y A;  1P8X A;  5HVK B;  3A5M S;  1EQY S;  4PKH B;  3A5N S;  2LJ8 A;  5HVK D;  1RGI G;  1C0G S;  2KVK A;  2XF1 A;  4KEE A;  1CNU A;  4KEF A;  1WNJ A;  5KYY A;  2NUP B;  2NUT B;  3EFO A;  1VKK A;  5KYU B;  1CFY A;  2FF6 G;  3EGX B;  1T2L A;  1J72 A;  1F7S A;  4JD2 H;  1WM4 A;  1Q8G A;  1T44 G;  1JHW A;  4BEX 1;  2LLF A;  3EGD B;  3DA7 A;  1QPV A;  5KYW A;  3A5L S;  5L6W C;  1DEJ S;  1C0F S;  2FH4 A;  3FG6 A;  2LXX A;  4PKG G;  4CBU G;  5IVU A;  1TMW A;  2I2Q A;  1AK6 A;  1HQZ 1;  4Z94 G;  2FGH A;  2VIL A;  3EH1 A;  2FH2 A;  1KCQ A;  1AK7 A;  3FG7 A;  1Q8X A;  1X67 A;  3CJC G;  3EFO B;  1UDM A;  3CIP G;  3CJB G;  2VIK A;  2XFA A;  1P8Z G;  1D4X G;  5KYN A;  1YAG G;  2FF3 A;  2FH3 A;  3EG9 A;  2VAC A;  1SVY A;  3TU5 B;  5KYW B;  2QTV A;  2MP4 A;  1ESV S;  4LIZ A;  1M2V A;  1M2O A;  2HD7 A;  1VFQ A;  1YVN G;  3A5O S;  5FAF A;  5KYX A;  1MDU A;  1SVR A;  4CBW G;  1M4J A;  1COF A;  3EGD A;  1V6F A;  1AHQ A;  2MV2 A;  2MOT A;  5KYY B;  1WFS A;  3FFK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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